Wall clock time and date at job start Tue Mar 31 2020 05:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.39506 * 120.13534 * 137.68869 * 3 2 1 5 5 C 1.38951 * 119.77692 * 180.25303 * 4 3 2 6 6 C 1.48408 * 119.97209 * 179.76695 * 5 4 3 7 7 C 1.39691 * 119.98919 * 359.73794 * 6 5 4 8 8 C 1.38626 * 120.35151 * 179.97438 * 7 6 5 9 9 F 1.35102 * 119.83312 * 180.02562 * 8 7 6 10 10 C 1.37936 * 120.32755 * 0.02562 * 8 7 6 11 11 C 1.40713 * 119.96677 * 0.02562 * 10 8 7 12 12 C 1.41435 * 120.17386 * 179.97438 * 11 10 8 13 13 H 1.08001 * 119.99583 * 154.98806 * 12 11 10 14 14 C 1.39917 * 119.99788 * 334.98998 * 12 11 10 15 15 N 1.30832 * 120.00039 * 342.54293 * 14 12 11 16 16 Si 1.86796 * 119.99976 * 162.54298 * 14 12 11 17 17 H 1.48497 * 109.47212 * 359.97438 * 16 14 12 18 18 H 1.48507 * 109.46965 * 119.99663 * 16 14 12 19 19 H 1.48492 * 109.47468 * 239.99726 * 16 14 12 20 20 C 1.38744 * 119.98678 * 179.72113 * 6 5 4 21 21 C 1.39586 * 120.05089 * 359.48780 * 5 4 3 22 22 C 1.37864 * 120.27135 * 0.27535 * 21 5 4 23 23 C 1.38735 * 120.22559 * 359.97438 * 22 21 5 24 24 O 1.35680 * 120.02991 * 180.02562 * 23 22 21 25 25 H 1.08005 * 120.11076 * 0.02562 * 4 3 2 26 26 H 1.08007 * 119.82704 * 0.02562 * 7 6 5 27 27 H 1.08004 * 120.01639 * 180.27291 * 10 8 7 28 28 H 0.97001 * 120.00133 * 180.02562 * 15 14 12 29 29 H 1.08003 * 120.16281 * 0.02562 * 20 6 5 30 30 H 1.08001 * 119.86233 * 180.26056 * 21 5 4 31 31 H 1.07999 * 119.88456 * 180.02562 * 22 21 5 32 32 H 0.96705 * 113.99480 * 90.00530 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2680 0.8932 -0.8122 5 6 4.6575 0.8838 -0.8103 6 6 5.4065 1.8278 -1.6764 7 6 4.7144 2.7216 -2.4972 8 6 5.4064 3.6070 -3.3088 9 9 4.7265 4.4672 -4.0981 10 6 6.7858 3.6141 -3.3146 11 6 7.4967 2.7190 -2.4940 12 6 8.9110 2.7221 -2.4969 13 1 9.4535 2.3657 -1.6336 14 6 9.6073 3.1870 -3.6179 15 7 8.9957 3.2947 -4.7695 16 14 11.4099 3.6537 -3.4705 17 1 11.8631 3.4428 -2.0722 18 1 12.2169 2.8072 -4.3858 19 1 11.5829 5.0824 -3.8362 20 6 6.7939 1.8227 -1.6704 21 6 5.3494 -0.0089 0.0100 22 6 4.6597 -0.8885 0.8171 23 6 3.2724 -0.8924 0.8203 24 8 2.5977 -1.7594 1.6166 25 1 2.7317 1.5866 -1.4431 26 1 3.6343 2.7233 -2.4988 27 1 7.3198 4.3091 -3.9456 28 1 9.4785 3.6167 -5.5468 29 1 7.3313 1.1326 -1.0369 30 1 6.4294 -0.0107 0.0122 31 1 5.2013 -1.5762 1.4496 32 1 2.4018 -1.4129 2.4980 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242566185.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:49 Heat of formation + Delta-G solvation = -23.890730 kcal Electronic energy + Delta-G solvation = -20038.055373 eV Core-core repulsion = 16649.649042 eV Total energy + Delta-G solvation = -3388.406331 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -47.77535 -40.03933 -37.94644 -36.63016 -36.25957 -33.91860 -31.54017 -31.21632 -29.72287 -27.69231 -25.76999 -23.87585 -23.06426 -21.03853 -20.68505 -19.07230 -18.20088 -17.08667 -16.15991 -16.03675 -15.72512 -14.96549 -14.86304 -14.65605 -14.45388 -14.15445 -13.86731 -13.50599 -13.21080 -12.98379 -12.86508 -12.46489 -12.40729 -12.01939 -11.77908 -11.67834 -11.22739 -11.19436 -10.92015 -10.59049 -10.53194 -10.15107 -9.83815 -9.46339 -9.03270 -8.83910 -7.67528 -7.26234 -6.98062 -4.65523 0.67431 1.08981 2.46659 2.50988 2.66685 2.94526 2.97834 3.01780 3.18081 3.75688 3.77718 3.86295 4.04719 4.40246 4.82063 4.98107 5.24824 5.33043 5.35357 5.57211 5.62912 5.79931 6.12727 6.13039 6.19699 6.38942 6.41374 6.65453 6.76519 6.82649 6.99064 7.27263 7.41891 7.44854 7.49789 7.54170 7.69767 7.97044 8.32142 8.59192 8.60444 9.94681 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.023534 B = 0.004094 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.458507 B = 6837.355810 C = 7941.009508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.267 3.733 3 C -0.059 4.059 4 C -0.056 4.056 5 C -0.018 4.018 6 C -0.017 4.017 7 C -0.262 4.262 8 C 0.108 3.892 9 F -0.165 7.165 10 C -0.191 4.191 11 C 0.126 3.874 12 C -0.454 4.454 13 H 0.086 0.914 14 C 0.075 3.925 15 N -0.783 5.783 16 Si 0.912 3.088 17 H -0.258 1.258 18 H -0.273 1.273 19 H -0.270 1.270 20 C -0.206 4.206 21 C -0.070 4.070 22 C -0.141 4.141 23 C 0.134 3.866 24 O -0.495 6.495 25 H 0.139 0.861 26 H 0.105 0.895 27 H 0.130 0.870 28 H 0.285 0.715 29 H 0.107 0.893 30 H 0.142 0.858 31 H 0.138 0.862 32 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.101 -4.230 8.457 9.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.048 4.048 3 C -0.063 4.063 4 C -0.076 4.076 5 C -0.018 4.018 6 C -0.018 4.018 7 C -0.282 4.282 8 C 0.089 3.911 9 F -0.144 7.144 10 C -0.211 4.211 11 C 0.123 3.877 12 C -0.483 4.483 13 H 0.104 0.896 14 C -0.145 4.145 15 N -0.407 5.407 16 Si 0.735 3.265 17 H -0.182 1.182 18 H -0.198 1.198 19 H -0.195 1.195 20 C -0.225 4.225 21 C -0.088 4.088 22 C -0.159 4.159 23 C 0.087 3.913 24 O -0.305 6.305 25 H 0.157 0.843 26 H 0.123 0.877 27 H 0.148 0.852 28 H 0.096 0.904 29 H 0.125 0.875 30 H 0.160 0.840 31 H 0.156 0.844 32 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -3.819 -4.516 7.689 9.701 hybrid contribution 1.037 0.632 0.073 1.217 sum -2.782 -3.885 7.763 9.115 Atomic orbital electron populations 1.81192 1.12023 1.08629 1.08360 1.25510 0.92477 0.93209 0.93607 1.16315 0.84540 1.00972 1.04437 1.21263 0.93787 0.96212 0.96386 1.18950 0.91881 0.95433 0.95581 1.17926 0.92851 0.94951 0.96038 1.20271 0.97977 1.03943 1.06005 1.17541 0.90442 0.90660 0.92506 1.91354 1.80762 1.69142 1.73131 1.21401 0.90276 1.03301 1.06154 1.17290 0.93396 0.88070 0.88924 1.19644 0.90964 1.36699 1.00955 0.89625 1.25984 1.01415 0.92670 0.94427 1.69807 1.38979 1.31771 1.00170 0.86196 0.81260 0.79114 0.79887 1.18155 1.19785 1.19531 1.21129 0.91637 1.02887 1.06893 1.21493 1.01223 0.92871 0.93233 1.21247 0.92370 1.00499 1.01828 1.18353 0.89842 0.89587 0.93503 1.84770 1.76640 1.40640 1.28468 0.84297 0.87720 0.85197 0.90394 0.87549 0.84002 0.84438 0.75177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.76 18.54 41.84 0.78 -5.98 16 2 C 0.27 3.80 14.86 -22.47 -0.33 3.47 16 3 C -0.06 -0.77 5.75 -106.75 -0.61 -1.38 16 4 C -0.06 -0.79 9.13 -38.84 -0.35 -1.15 16 5 C -0.02 -0.28 5.87 -104.94 -0.62 -0.90 16 6 C -0.02 -0.33 5.87 -104.98 -0.62 -0.95 16 7 C -0.26 -5.36 9.41 -38.90 -0.37 -5.73 16 8 C 0.11 2.46 7.28 -39.55 -0.29 2.17 16 9 F -0.16 -3.70 17.26 2.25 0.04 -3.66 16 10 C -0.19 -4.66 8.65 -38.76 -0.34 -4.99 16 11 C 0.13 3.00 5.57 -106.87 -0.59 2.40 16 12 C -0.45 -10.72 9.05 -37.74 -0.34 -11.06 16 13 H 0.09 1.90 7.90 -52.49 -0.41 1.48 16 14 C 0.07 1.71 5.14 -17.35 -0.09 1.62 16 15 N -0.78 -18.80 10.97 55.55 0.61 -18.19 16 16 Si 0.91 16.99 29.59 -169.99 -5.03 11.96 16 17 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 18 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 19 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 20 C -0.21 -4.28 9.16 -38.52 -0.35 -4.63 16 21 C -0.07 -0.90 9.41 -39.22 -0.37 -1.27 16 22 C -0.14 -1.54 9.96 -39.53 -0.39 -1.94 16 23 C 0.13 1.57 6.71 -38.65 -0.26 1.31 16 24 O -0.49 -5.09 12.92 -18.74 -0.24 -5.33 16 25 H 0.14 1.92 6.17 -52.48 -0.32 1.59 16 26 H 0.10 1.91 6.17 -52.48 -0.32 1.58 16 27 H 0.13 3.32 6.18 -52.48 -0.32 3.00 16 28 H 0.28 6.21 8.30 -40.82 -0.34 5.87 16 29 H 0.11 1.95 6.17 -52.48 -0.32 1.62 16 30 H 0.14 1.71 6.17 -52.49 -0.32 1.39 16 31 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.39 2.17 9.06 45.56 0.41 2.59 16 LS Contribution 296.58 15.07 4.47 4.47 Total: -1.00 -27.00 296.58 -6.48 -33.48 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -1.18 Total: 6.28 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -5.92 Total: -23.03 kcal Atomic # 7 Polarization: -25.55 SS G_CDS: 1.38 Total: -24.17 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.24 Total: -5.33 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.04 Total: -3.66 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.96 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.00 -6.48 -33.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242566185.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.591 kcal (2) G-P(sol) polarization free energy of solvation -27.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds