Wall clock time and date at job start Tue Mar 31 2020 05:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.39506 * 120.13534 * 137.68869 * 3 2 1 5 5 C 1.38951 * 119.77692 * 180.25303 * 4 3 2 6 6 C 1.48408 * 119.97209 * 179.76695 * 5 4 3 7 7 C 1.39691 * 119.98919 * 359.73794 * 6 5 4 8 8 C 1.38626 * 120.35151 * 179.97438 * 7 6 5 9 9 F 1.35102 * 119.83312 * 180.02562 * 8 7 6 10 10 C 1.37936 * 120.32755 * 0.02562 * 8 7 6 11 11 C 1.40713 * 119.96677 * 0.02562 * 10 8 7 12 12 C 1.41435 * 120.17386 * 179.97438 * 11 10 8 13 13 H 1.08001 * 119.99583 * 154.98806 * 12 11 10 14 14 C 1.39917 * 119.99788 * 334.98998 * 12 11 10 15 15 N 1.30832 * 120.00039 * 342.54293 * 14 12 11 16 16 Si 1.86796 * 119.99976 * 162.54298 * 14 12 11 17 17 H 1.48497 * 109.47212 * 359.97438 * 16 14 12 18 18 H 1.48507 * 109.46965 * 119.99663 * 16 14 12 19 19 H 1.48492 * 109.47468 * 239.99726 * 16 14 12 20 20 C 1.38744 * 119.98678 * 179.72113 * 6 5 4 21 21 C 1.39586 * 120.05089 * 359.48780 * 5 4 3 22 22 C 1.37864 * 120.27135 * 0.27535 * 21 5 4 23 23 C 1.38735 * 120.22559 * 359.97438 * 22 21 5 24 24 O 1.35680 * 120.02991 * 180.02562 * 23 22 21 25 25 H 1.08005 * 120.11076 * 0.02562 * 4 3 2 26 26 H 1.08007 * 119.82704 * 0.02562 * 7 6 5 27 27 H 1.08004 * 120.01639 * 180.27291 * 10 8 7 28 28 H 0.97001 * 120.00133 * 180.02562 * 15 14 12 29 29 H 1.08003 * 120.16281 * 0.02562 * 20 6 5 30 30 H 1.08001 * 119.86233 * 180.26056 * 21 5 4 31 31 H 1.07999 * 119.88456 * 180.02562 * 22 21 5 32 32 H 0.96705 * 113.99480 * 90.00530 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2680 0.8932 -0.8122 5 6 4.6575 0.8838 -0.8103 6 6 5.4065 1.8278 -1.6764 7 6 4.7144 2.7216 -2.4972 8 6 5.4064 3.6070 -3.3088 9 9 4.7265 4.4672 -4.0981 10 6 6.7858 3.6141 -3.3146 11 6 7.4967 2.7190 -2.4940 12 6 8.9110 2.7221 -2.4969 13 1 9.4535 2.3657 -1.6336 14 6 9.6073 3.1870 -3.6179 15 7 8.9957 3.2947 -4.7695 16 14 11.4099 3.6537 -3.4705 17 1 11.8631 3.4428 -2.0722 18 1 12.2169 2.8072 -4.3858 19 1 11.5829 5.0824 -3.8362 20 6 6.7939 1.8227 -1.6704 21 6 5.3494 -0.0089 0.0100 22 6 4.6597 -0.8885 0.8171 23 6 3.2724 -0.8924 0.8203 24 8 2.5977 -1.7594 1.6166 25 1 2.7317 1.5866 -1.4431 26 1 3.6343 2.7233 -2.4988 27 1 7.3198 4.3091 -3.9456 28 1 9.4785 3.6167 -5.5468 29 1 7.3313 1.1326 -1.0369 30 1 6.4294 -0.0107 0.0122 31 1 5.2013 -1.5762 1.4496 32 1 2.4018 -1.4129 2.4980 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242566185.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:48 Heat of formation + Delta-G solvation = -38.182708 kcal Electronic energy + Delta-G solvation = -20038.675120 eV Core-core repulsion = 16649.649042 eV Total energy + Delta-G solvation = -3389.026078 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.56841 -41.08619 -39.36939 -37.71651 -37.47655 -35.53902 -32.68241 -32.55562 -31.34255 -29.05971 -27.43959 -25.01670 -24.31920 -22.53827 -22.19755 -20.21548 -19.42815 -18.49150 -17.70833 -17.26694 -16.97449 -16.44384 -16.28857 -16.23875 -16.12305 -15.44492 -15.02150 -14.66365 -14.60216 -14.23324 -14.10473 -13.87241 -13.68911 -13.33864 -13.30412 -12.98930 -12.72751 -12.61991 -12.31968 -12.08975 -11.93896 -11.56537 -11.38280 -11.09456 -10.18720 -10.03269 -9.39053 -8.77391 -8.64219 -6.43123 -0.38059 -0.00850 0.80529 1.06572 1.43372 1.50484 1.55231 1.58674 1.95753 2.21172 2.57343 2.77255 2.88491 3.13338 3.59943 3.63591 3.85880 4.02791 4.21568 4.36095 4.46685 4.53102 4.80101 4.87444 4.93452 5.05611 5.10023 5.22682 5.28704 5.44595 5.60738 5.72143 5.76210 5.91960 5.97774 6.25653 6.37640 6.58320 6.76432 6.85320 6.88469 8.28354 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.023534 B = 0.004094 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.458507 B = 6837.355810 C = 7941.009508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.283 3.717 3 C -0.069 4.069 4 C -0.050 4.050 5 C -0.048 4.048 6 C -0.003 4.003 7 C -0.266 4.266 8 C 0.092 3.908 9 F -0.168 7.168 10 C -0.226 4.226 11 C 0.102 3.898 12 C -0.483 4.483 13 H 0.095 0.905 14 C 0.034 3.966 15 N -0.822 5.822 16 Si 0.983 3.017 17 H -0.249 1.249 18 H -0.268 1.268 19 H -0.271 1.271 20 C -0.212 4.212 21 C -0.058 4.058 22 C -0.130 4.130 23 C 0.161 3.839 24 O -0.500 6.500 25 H 0.136 0.864 26 H 0.126 0.874 27 H 0.106 0.894 28 H 0.289 0.711 29 H 0.131 0.869 30 H 0.152 0.848 31 H 0.173 0.827 32 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.831 -6.220 10.828 12.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.031 4.031 3 C -0.073 4.073 4 C -0.070 4.070 5 C -0.049 4.049 6 C -0.004 4.004 7 C -0.286 4.286 8 C 0.073 3.927 9 F -0.148 7.148 10 C -0.246 4.246 11 C 0.100 3.900 12 C -0.511 4.511 13 H 0.113 0.887 14 C -0.182 4.182 15 N -0.447 5.447 16 Si 0.804 3.196 17 H -0.172 1.172 18 H -0.192 1.192 19 H -0.196 1.196 20 C -0.231 4.231 21 C -0.076 4.076 22 C -0.148 4.148 23 C 0.113 3.887 24 O -0.315 6.315 25 H 0.154 0.846 26 H 0.144 0.856 27 H 0.124 0.876 28 H 0.100 0.900 29 H 0.149 0.851 30 H 0.170 0.830 31 H 0.190 0.810 32 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -3.572 -6.508 10.090 12.527 hybrid contribution 0.769 1.105 -0.522 1.444 sum -2.803 -5.403 9.568 11.340 Atomic orbital electron populations 1.81215 1.12968 1.09789 1.09540 1.25626 0.92544 0.92256 0.92663 1.16295 0.83821 1.01849 1.05355 1.21179 0.93366 0.96232 0.96263 1.18723 0.92164 0.96703 0.97277 1.18222 0.92642 0.94389 0.95124 1.20583 0.99151 1.03400 1.05464 1.17798 0.90315 0.91396 0.93185 1.91329 1.80664 1.69386 1.73374 1.21295 0.91004 1.04546 1.07770 1.17641 0.94092 0.88656 0.89635 1.19966 0.91359 1.38078 1.01720 0.88692 1.26850 1.05652 0.91968 0.93736 1.69889 1.40858 1.32933 1.01045 0.85128 0.75841 0.78462 0.80186 1.17173 1.19243 1.19631 1.21400 0.92479 1.02652 1.06586 1.21641 1.01820 0.92007 0.92137 1.21497 0.91933 1.00101 1.01233 1.18436 0.90157 0.87816 0.92248 1.84713 1.76405 1.40388 1.29952 0.84594 0.85623 0.87618 0.90001 0.85084 0.82999 0.80964 0.72217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -13.87 18.54 19.01 0.35 -13.51 16 2 C 0.28 7.48 14.86 88.33 1.31 8.79 16 3 C -0.07 -1.61 5.75 -21.24 -0.12 -1.73 16 4 C -0.05 -1.31 9.13 22.75 0.21 -1.10 16 5 C -0.05 -1.39 5.87 -20.07 -0.12 -1.51 16 6 C 0.00 -0.13 5.87 -20.10 -0.12 -0.25 16 7 C -0.27 -10.95 9.41 22.71 0.21 -10.73 16 8 C 0.09 4.37 7.28 22.29 0.16 4.53 16 9 F -0.17 -7.86 17.26 44.97 0.78 -7.09 16 10 C -0.23 -11.59 8.65 22.80 0.20 -11.39 16 11 C 0.10 5.01 5.57 -21.32 -0.12 4.89 16 12 C -0.48 -23.25 9.05 23.46 0.21 -23.04 16 13 H 0.10 4.21 7.90 -2.91 -0.02 4.19 16 14 C 0.03 1.58 5.14 85.25 0.44 2.02 16 15 N -0.82 -41.18 10.97 21.82 0.24 -40.94 16 16 Si 0.98 35.12 29.59 68.60 2.03 37.15 16 17 H -0.25 -8.40 7.11 99.48 0.71 -7.70 16 18 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 19 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 20 C -0.21 -8.73 9.16 22.96 0.21 -8.51 16 21 C -0.06 -1.28 9.41 22.51 0.21 -1.07 16 22 C -0.13 -2.20 9.96 22.30 0.22 -1.97 16 23 C 0.16 3.06 6.71 22.87 0.15 3.21 16 24 O -0.50 -7.96 12.92 -89.98 -1.16 -9.12 16 25 H 0.14 3.57 6.17 -2.91 -0.02 3.55 16 26 H 0.13 4.52 6.17 -2.91 -0.02 4.50 16 27 H 0.11 5.82 6.18 -2.91 -0.02 5.80 16 28 H 0.29 13.16 8.30 -92.71 -0.77 12.39 16 29 H 0.13 4.58 6.17 -2.91 -0.02 4.56 16 30 H 0.15 3.08 6.17 -2.91 -0.02 3.06 16 31 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 32 H 0.42 2.59 9.06 -74.05 -0.67 1.92 16 Total: -1.00 -60.59 296.58 5.84 -54.74 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.54 Total: 16.62 kcal Atomic # 6 Polarization: -40.92 SS G_CDS: 3.06 Total: -37.86 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.59 Total: -54.45 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -1.16 Total: -9.12 kcal Atomic # 9 Polarization: -7.86 SS G_CDS: 0.78 Total: -7.09 kcal Atomic # 14 Polarization: 35.12 SS G_CDS: 2.03 Total: 37.15 kcal Total: -60.59 5.84 -54.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242566185.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.562 kcal (2) G-P(sol) polarization free energy of solvation -60.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds