Wall clock time and date at job start Tue Mar 31 2020 05:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86802 * 119.99944 * 2 1 4 4 H 1.48501 * 109.47422 * 269.99951 * 3 2 1 5 5 H 1.48499 * 109.46953 * 30.00334 * 3 2 1 6 6 H 1.48506 * 109.46932 * 150.00012 * 3 2 1 7 7 C 1.39914 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00169 * 197.65698 * 7 2 1 9 9 C 1.41317 * 119.99796 * 17.64886 * 7 2 1 10 10 C 1.40545 * 120.20881 * 24.77628 * 9 7 2 11 11 C 1.38656 * 119.65455 * 180.24461 * 10 9 7 12 12 C 1.48407 * 119.95989 * 179.73104 * 11 10 9 13 13 C 1.39779 * 119.92144 * 359.72970 * 12 11 10 14 14 C 1.37663 * 120.35850 * 180.02562 * 13 12 11 15 15 C 1.38795 * 120.03633 * 359.97438 * 14 13 12 16 16 O 1.35149 * 133.77141 * 180.02562 * 15 14 13 17 17 C 1.34213 * 108.18047 * 179.97438 * 16 15 14 18 18 N 1.29888 * 110.31396 * 0.02562 * 17 16 15 19 19 C 1.36115 * 108.79571 * 359.97438 * 18 17 16 20 20 C 1.38821 * 119.91998 * 179.70266 * 12 11 10 21 21 C 1.39809 * 120.07576 * 359.45573 * 11 10 9 22 22 C 1.38230 * 120.42195 * 0.30221 * 21 11 10 23 23 C 1.38069 * 120.34750 * 359.97090 * 22 21 11 24 24 F 1.35103 * 120.04458 * 180.02562 * 23 22 21 25 25 H 0.97008 * 120.00314 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.17110 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.82357 * 359.71994 * 13 12 11 28 28 H 1.07996 * 119.98325 * 179.97438 * 14 13 12 29 29 H 1.08006 * 124.84266 * 179.97438 * 17 16 15 30 30 H 1.07995 * 120.18702 * 0.02842 * 20 12 11 31 31 H 1.08007 * 119.78989 * 180.27023 * 21 11 10 32 32 H 1.08000 * 119.82878 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4900 2.0465 -1.4001 5 1 1.4399 2.6526 0.7001 6 1 3.5401 1.4402 0.7001 7 6 2.0081 -1.2117 -0.0005 8 1 3.0499 -1.2338 0.2831 9 6 1.3514 -2.4065 -0.3721 10 6 0.2239 -2.3626 -1.2100 11 6 -0.4147 -3.5416 -1.5633 12 6 -1.6094 -3.5027 -2.4428 13 6 -2.0923 -2.2766 -2.9090 14 6 -3.2001 -2.2299 -3.7248 15 6 -3.8442 -3.4040 -4.0896 16 8 -4.9232 -3.6794 -4.8555 17 6 -5.1013 -5.0096 -4.8651 18 7 -4.1911 -5.5917 -4.1443 19 6 -3.3667 -4.6403 -3.6267 20 6 -2.2444 -4.6840 -2.8009 21 6 0.0692 -4.7675 -1.0965 22 6 1.1809 -4.8148 -0.2764 23 6 1.8268 -3.6511 0.0908 24 9 2.9132 -3.7044 0.8922 25 1 -0.4851 0.8401 -0.0004 26 1 -0.1459 -1.4151 -1.5732 27 1 -1.5966 -1.3605 -2.6236 28 1 -3.5683 -1.2793 -4.0812 29 1 -5.8897 -5.5228 -5.3959 30 1 -1.8717 -5.6316 -2.4410 31 1 -0.4292 -5.6834 -1.3781 32 1 1.5467 -5.7670 0.0783 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242596413.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:12 Heat of formation + Delta-G solvation = 6.201659 kcal Electronic energy + Delta-G solvation = -20533.669204 eV Core-core repulsion = 17146.567776 eV Total energy + Delta-G solvation = -3387.101427 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.33281 -43.03117 -38.57383 -36.74055 -34.56618 -33.95130 -31.40280 -30.19555 -29.61682 -27.75162 -25.53075 -23.69190 -22.96039 -21.90791 -20.95195 -20.34975 -17.83073 -17.33838 -17.26316 -16.50168 -16.17094 -15.54122 -15.32264 -14.62338 -14.10164 -14.08071 -13.87668 -13.60282 -13.32244 -12.78201 -12.48999 -12.15465 -11.90177 -11.74262 -11.52168 -11.44806 -11.21199 -11.13135 -10.86325 -10.59166 -10.36263 -10.07724 -9.58211 -9.41741 -8.75885 -8.31797 -7.75048 -7.13913 -6.90853 -4.55865 0.92502 1.22361 2.51195 2.60485 2.72777 2.75677 2.98913 3.03189 3.06296 3.80525 3.95388 4.03500 4.48317 4.72266 5.08708 5.33386 5.35247 5.36286 5.51732 5.61269 5.81688 5.96889 6.04089 6.21764 6.33760 6.42091 6.51676 6.61036 6.73874 6.86888 6.99413 7.07414 7.32853 7.42320 7.69560 7.73489 7.78127 7.92208 8.34670 8.57838 8.65437 9.96865 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.020016 B = 0.004880 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.559653 B = 5736.600382 C = 7054.356361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.077 3.923 3 Si 0.913 3.087 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.451 4.451 8 H 0.085 0.915 9 C 0.083 3.917 10 C -0.122 4.122 11 C -0.056 4.056 12 C -0.007 4.007 13 C -0.077 4.077 14 C -0.097 4.097 15 C -0.005 4.005 16 O -0.223 6.223 17 C 0.214 3.786 18 N -0.484 5.484 19 C 0.018 3.982 20 C -0.068 4.068 21 C -0.201 4.201 22 C -0.121 4.121 23 C -0.021 4.021 24 F -0.161 7.161 25 H 0.285 0.715 26 H 0.134 0.866 27 H 0.150 0.850 28 H 0.132 0.868 29 H 0.251 0.749 30 H 0.137 0.863 31 H 0.103 0.897 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.461 -2.268 -7.397 10.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.480 4.480 8 H 0.103 0.897 9 C 0.080 3.920 10 C -0.141 4.141 11 C -0.056 4.056 12 C -0.009 4.009 13 C -0.095 4.095 14 C -0.116 4.116 15 C -0.055 4.055 16 O -0.114 6.114 17 C -0.018 4.018 18 N -0.213 5.213 19 C -0.093 4.093 20 C -0.087 4.087 21 C -0.221 4.221 22 C -0.140 4.140 23 C -0.041 4.041 24 F -0.141 7.141 25 H 0.096 0.904 26 H 0.151 0.849 27 H 0.168 0.832 28 H 0.150 0.850 29 H 0.266 0.734 30 H 0.155 0.845 31 H 0.121 0.879 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.560 -2.729 -7.235 10.814 hybrid contribution 0.218 1.248 0.030 1.267 sum -7.342 -1.481 -7.205 10.393 Atomic orbital electron populations 1.69798 1.07594 1.29772 1.34263 1.25914 0.94804 1.01541 0.91912 0.86212 0.80599 0.79941 0.79552 1.18999 1.20087 1.18387 1.19546 0.98493 0.90820 1.39131 0.89690 1.17537 0.92519 0.91059 0.90908 1.21319 0.97476 0.96411 0.98927 1.18354 0.94237 0.94369 0.98686 1.18888 0.94789 0.91663 0.95538 1.21353 0.94258 0.99030 0.94827 1.19764 0.96321 0.94529 1.00969 1.20359 0.89794 0.97475 0.97857 1.84474 1.41595 1.27281 1.58059 1.28090 0.98890 0.77546 0.97283 1.70569 1.05331 1.33054 1.12319 1.19698 0.98745 0.88285 1.02526 1.20378 0.92570 0.99246 0.96459 1.20237 1.00002 0.95812 1.06036 1.20427 0.97237 0.95883 1.00500 1.17960 0.90547 0.94780 1.00860 1.91283 1.53199 1.97303 1.72273 0.90419 0.84860 0.83244 0.84982 0.73377 0.84523 0.87858 0.87727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.69 10.96 55.55 0.61 -18.09 16 2 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 3 Si 0.91 17.67 29.59 -169.99 -5.03 12.63 16 4 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 5 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.45 -11.52 8.78 -37.78 -0.33 -11.85 16 8 H 0.09 2.16 7.73 -52.49 -0.41 1.76 16 9 C 0.08 2.12 5.57 -106.80 -0.60 1.52 16 10 C -0.12 -2.89 8.06 -38.56 -0.31 -3.20 16 11 C -0.06 -1.21 5.87 -104.97 -0.62 -1.82 16 12 C -0.01 -0.14 5.87 -104.92 -0.62 -0.75 16 13 C -0.08 -1.32 9.40 -39.22 -0.37 -1.69 16 14 C -0.10 -1.48 10.04 -39.59 -0.40 -1.88 16 15 C -0.01 -0.09 7.43 -38.57 -0.29 -0.37 16 16 O -0.22 -3.08 10.77 3.57 0.04 -3.04 16 17 C 0.21 2.46 13.12 51.94 0.68 3.14 16 18 N -0.48 -7.47 11.34 -12.56 -0.14 -7.62 16 19 C 0.02 0.31 7.23 -84.72 -0.61 -0.31 16 20 C -0.07 -1.21 9.47 -38.93 -0.37 -1.58 16 21 C -0.20 -4.20 9.42 -39.00 -0.37 -4.57 16 22 C -0.12 -2.65 9.99 -39.65 -0.40 -3.05 16 23 C -0.02 -0.52 7.31 -38.58 -0.28 -0.80 16 24 F -0.16 -3.97 16.70 2.25 0.04 -3.94 16 25 H 0.28 6.08 8.30 -40.82 -0.34 5.74 16 26 H 0.13 3.10 4.27 -52.49 -0.22 2.88 16 27 H 0.15 2.54 6.16 -52.49 -0.32 2.22 16 28 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.25 1.28 8.06 -52.48 -0.42 0.86 16 30 H 0.14 2.30 6.16 -52.49 -0.32 1.98 16 31 H 0.10 1.88 6.16 -52.48 -0.32 1.56 16 32 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 286.34 15.07 4.32 4.32 Total: -1.00 -28.40 286.34 -7.13 -35.53 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -2.00 Total: 5.69 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -4.96 Total: -25.49 kcal Atomic # 7 Polarization: -26.17 SS G_CDS: 0.47 Total: -25.70 kcal Atomic # 8 Polarization: -3.08 SS G_CDS: 0.04 Total: -3.04 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.04 Total: -3.94 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.40 -7.13 -35.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242596413.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.729 kcal (2) G-P(sol) polarization free energy of solvation -28.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds