Wall clock time and date at job start Tue Mar 31 2020 05:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30794 * 1 3 3 Si 1.86804 * 119.99885 * 2 1 4 4 H 1.48498 * 109.46913 * 240.00113 * 3 2 1 5 5 H 1.48506 * 109.47053 * 359.97438 * 3 2 1 6 6 H 1.48489 * 109.47207 * 119.99647 * 3 2 1 7 7 C 1.40039 * 120.00411 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00050 * 164.16643 * 7 2 1 9 9 C 1.40879 * 119.99561 * 344.17122 * 7 2 1 10 10 C 1.40715 * 120.31828 * 334.33874 * 9 7 2 11 11 C 1.37627 * 119.84568 * 179.97438 * 10 9 7 12 12 F 1.35105 * 119.74645 * 179.97438 * 11 10 9 13 13 C 1.39194 * 120.50609 * 0.02562 * 11 10 9 14 14 C 1.37997 * 120.65068 * 359.69867 * 13 11 10 15 15 C 1.39161 * 120.13416 * 0.55387 * 14 13 11 16 16 C 1.47831 * 120.25797 * 179.74597 * 15 14 13 17 17 C 1.40080 * 119.96238 * 129.69840 * 16 15 14 18 18 C 1.36551 * 120.47272 * 180.02562 * 17 16 15 19 19 C 1.38889 * 120.20089 * 359.95685 * 18 17 16 20 20 O 1.35116 * 133.77371 * 180.02562 * 19 18 17 21 21 C 1.34237 * 108.20117 * 179.97438 * 20 19 18 22 22 N 1.29895 * 110.32649 * 0.02562 * 21 20 19 23 23 C 1.36110 * 108.78162 * 359.97438 * 22 21 20 24 24 C 1.39225 * 119.95687 * 309.72694 * 16 15 14 25 25 H 0.97003 * 120.00085 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.08007 * 359.95942 * 10 9 7 27 27 H 1.08000 * 119.67723 * 180.02562 * 13 11 10 28 28 H 1.08002 * 119.93670 * 180.28379 * 14 13 11 29 29 H 1.08002 * 119.75877 * 0.02787 * 17 16 15 30 30 H 1.08000 * 119.89745 * 179.97438 * 18 17 16 31 31 H 1.07993 * 124.83719 * 180.02562 * 21 20 19 32 32 H 1.07995 * 120.26625 * 359.70045 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 3.0956 1.6964 -1.2125 5 1 1.2769 2.7465 -0.0006 6 1 3.0956 1.6965 1.2124 7 6 2.0082 -1.2127 0.0005 8 1 3.0574 -1.2305 -0.2546 9 6 1.3439 -2.4095 0.3339 10 6 0.2029 -2.3830 1.1571 11 6 -0.4388 -3.5580 1.4761 12 9 -1.5338 -3.5303 2.2671 13 6 0.0322 -4.7747 0.9911 14 6 1.1459 -4.8241 0.1777 15 6 1.8186 -3.6529 -0.1576 16 6 3.0152 -3.7033 -1.0242 17 6 3.1072 -2.8609 -2.1397 18 6 4.2074 -2.8991 -2.9475 19 6 5.2485 -3.7753 -2.6691 20 8 6.4333 -4.0380 -3.2631 21 6 7.0536 -4.9956 -2.5560 22 7 6.3227 -5.3543 -1.5439 23 6 5.1726 -4.6264 -1.5541 24 6 4.0492 -4.5883 -0.7310 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1682 -1.4429 1.5378 27 1 -0.4820 -5.6885 1.2495 28 1 1.4987 -5.7740 -0.1960 29 1 2.3020 -2.1764 -2.3623 30 1 4.2684 -2.2458 -3.8053 31 1 8.0224 -5.4090 -2.7945 32 1 3.9834 -5.2360 0.1306 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242597684.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:16 Heat of formation + Delta-G solvation = 3.224987 kcal Electronic energy + Delta-G solvation = -20809.095661 eV Core-core repulsion = 17421.865155 eV Total energy + Delta-G solvation = -3387.230506 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.75001 -42.84083 -38.46776 -36.62921 -34.38717 -33.94574 -31.23442 -30.16110 -29.38305 -27.75451 -25.65742 -23.55469 -22.56246 -21.66914 -21.09905 -20.30466 -17.76046 -17.47010 -17.05585 -16.33423 -15.99057 -15.71495 -15.03542 -14.72552 -14.41403 -13.89887 -13.85940 -13.56535 -13.13164 -12.81583 -12.45730 -12.38418 -11.77289 -11.73647 -11.45745 -11.26429 -11.11960 -10.98675 -10.83820 -10.55265 -10.21005 -10.09071 -9.77906 -9.41256 -8.33480 -8.12818 -7.74847 -7.28047 -6.97891 -4.66603 1.15271 1.55923 2.51974 2.66206 2.83367 2.90878 2.94339 2.96225 3.04820 3.73425 4.14644 4.20553 4.35504 4.93362 5.28620 5.32108 5.54403 5.56379 5.68854 5.81779 5.90306 6.10336 6.22525 6.27826 6.53543 6.57621 6.72058 6.75443 6.83236 6.95252 7.07189 7.16854 7.32308 7.51724 7.61812 7.72788 7.88870 7.98366 8.30721 8.55328 8.60260 9.87957 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.014624 B = 0.006403 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.174836 B = 4371.872194 C = 5984.620878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.444 4.444 8 H 0.089 0.911 9 C 0.149 3.851 10 C -0.196 4.196 11 C 0.111 3.889 12 F -0.166 7.166 13 C -0.277 4.277 14 C -0.041 4.041 15 C -0.196 4.196 16 C 0.024 3.976 17 C -0.059 4.059 18 C -0.106 4.106 19 C -0.010 4.010 20 O -0.224 6.224 21 C 0.205 3.795 22 N -0.484 5.484 23 C 0.016 3.984 24 C -0.080 4.080 25 H 0.288 0.712 26 H 0.132 0.868 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.149 0.851 30 H 0.127 0.873 31 H 0.248 0.752 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.201 -2.644 -4.693 8.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.145 4.145 3 Si 0.732 3.268 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.472 4.472 8 H 0.107 0.893 9 C 0.146 3.854 10 C -0.216 4.216 11 C 0.092 3.908 12 F -0.145 7.145 13 C -0.297 4.297 14 C -0.059 4.059 15 C -0.198 4.198 16 C 0.022 3.978 17 C -0.077 4.077 18 C -0.125 4.125 19 C -0.059 4.059 20 O -0.115 6.115 21 C -0.026 4.026 22 N -0.213 5.213 23 C -0.095 4.095 24 C -0.099 4.099 25 H 0.099 0.901 26 H 0.150 0.850 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.167 0.833 30 H 0.145 0.855 31 H 0.263 0.737 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.081 -2.913 -4.240 8.752 hybrid contribution 0.122 1.164 -0.359 1.224 sum 7.202 -1.750 -4.599 8.723 Atomic orbital electron populations 1.69772 1.07728 1.30182 1.32365 1.26022 0.94771 1.01695 0.91988 0.86322 0.80237 0.79713 0.80488 1.18529 1.20046 1.18499 1.19611 0.97827 0.90527 1.39233 0.89335 1.17231 0.89598 0.91214 0.87379 1.21270 1.00442 0.96047 1.03805 1.17791 0.84674 0.95259 0.93114 1.91346 1.52800 1.97613 1.72741 1.20207 1.03472 0.95298 1.10709 1.20404 0.94014 0.96069 0.95442 1.18456 0.99906 0.93939 1.07482 1.18618 0.92976 0.92859 0.93300 1.21180 0.96655 0.97493 0.92363 1.19518 0.91359 0.99299 1.02315 1.20394 0.87403 1.02229 0.95866 1.84443 1.27857 1.49508 1.49720 1.28003 0.99336 0.87856 0.87427 1.70547 1.03888 1.25816 1.21054 1.19690 0.94973 0.97164 0.97658 1.20463 0.90118 1.00503 0.98789 0.90124 0.84986 0.87945 0.87991 0.83315 0.85471 0.73651 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.24 10.91 55.55 0.61 -17.63 16 2 C 0.08 1.71 5.17 -17.32 -0.09 1.62 16 3 Si 0.91 17.12 29.59 -169.99 -5.03 12.09 16 4 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 5 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 6 H -0.26 -4.98 7.11 56.52 0.40 -4.57 16 7 C -0.44 -10.39 7.12 -37.91 -0.27 -10.66 16 8 H 0.09 2.02 6.57 -52.49 -0.34 1.68 16 9 C 0.15 3.58 5.56 -106.57 -0.59 2.99 16 10 C -0.20 -4.82 8.64 -38.87 -0.34 -5.15 16 11 C 0.11 2.60 7.28 -39.45 -0.29 2.31 16 12 F -0.17 -3.79 17.26 2.25 0.04 -3.75 16 13 C -0.28 -5.97 10.01 -39.31 -0.39 -6.37 16 14 C -0.04 -0.85 9.49 -39.33 -0.37 -1.23 16 15 C -0.20 -4.31 5.51 -104.24 -0.57 -4.89 16 16 C 0.02 0.48 4.92 -104.92 -0.52 -0.04 16 17 C -0.06 -1.09 7.89 -39.50 -0.31 -1.40 16 18 C -0.11 -1.77 9.99 -39.95 -0.40 -2.17 16 19 C -0.01 -0.17 7.43 -38.50 -0.29 -0.45 16 20 O -0.22 -3.38 10.77 3.60 0.04 -3.34 16 21 C 0.21 2.61 13.12 51.94 0.68 3.29 16 22 N -0.48 -8.04 11.34 -12.56 -0.14 -8.18 16 23 C 0.02 0.29 7.23 -84.72 -0.61 -0.32 16 24 C -0.08 -1.51 9.57 -38.81 -0.37 -1.88 16 25 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16 26 H 0.13 3.37 6.17 -52.48 -0.32 3.05 16 27 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 28 H 0.10 1.87 8.04 -52.49 -0.42 1.45 16 29 H 0.15 2.80 7.28 -52.49 -0.38 2.42 16 30 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.25 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.13 2.35 8.04 -52.49 -0.42 1.93 16 LS Contribution 288.70 15.07 4.35 4.35 Total: -1.00 -26.93 288.70 -7.17 -34.09 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -2.30 Total: 6.73 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -4.73 Total: -24.36 kcal Atomic # 7 Polarization: -26.28 SS G_CDS: 0.46 Total: -25.81 kcal Atomic # 8 Polarization: -3.38 SS G_CDS: 0.04 Total: -3.34 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.04 Total: -3.75 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.93 -7.17 -34.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242597684.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.320 kcal (2) G-P(sol) polarization free energy of solvation -26.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds