Wall clock time and date at job start Tue Mar 31 2020 05:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86794 * 119.99893 * 2 1 4 4 H 1.48504 * 109.46980 * 275.40905 * 3 2 1 5 5 H 1.48491 * 109.47423 * 35.41122 * 3 2 1 6 6 H 1.48500 * 109.47151 * 155.41556 * 3 2 1 7 7 C 1.39992 * 119.99497 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00203 * 341.79869 * 7 2 1 9 9 C 1.40861 * 119.99448 * 161.80800 * 7 2 1 10 10 C 1.41412 * 120.52549 * 150.51119 * 9 7 2 11 11 C 1.36424 * 118.44283 * 180.26963 * 10 9 7 12 12 C 1.40272 * 119.44606 * 359.74947 * 11 10 9 13 13 C 1.47078 * 119.47738 * 179.97438 * 12 11 10 14 14 C 1.36106 * 125.14576 * 180.02562 * 13 12 11 15 15 C 1.46210 * 106.06550 * 179.97438 * 14 13 12 16 16 C 1.39764 * 134.11965 * 180.02562 * 15 14 13 17 17 C 1.37827 * 119.56702 * 179.97438 * 16 15 14 18 18 F 1.35103 * 119.88369 * 179.97438 * 17 16 15 19 19 C 1.39012 * 120.23698 * 0.02562 * 17 16 15 20 20 C 1.37878 * 120.72090 * 359.97438 * 19 17 16 21 21 C 1.38858 * 120.04580 * 0.02562 * 20 19 17 22 22 O 1.34829 * 125.14248 * 359.71109 * 13 12 11 23 23 N 1.33310 * 121.04544 * 359.97438 * 12 11 10 24 24 C 1.31135 * 121.69063 * 0.02562 * 23 12 11 25 25 H 0.96998 * 119.99484 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.78136 * 0.02562 * 10 9 7 27 27 H 1.08000 * 120.27752 * 179.72746 * 11 10 9 28 28 H 1.07996 * 126.96447 * 359.95744 * 14 13 12 29 29 H 1.08002 * 120.21840 * 0.02562 * 16 15 14 30 30 H 1.08000 * 119.64134 * 180.02562 * 19 17 16 31 31 H 1.08004 * 119.97578 * 179.97438 * 20 19 17 32 32 H 1.08003 * 119.78248 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3754 2.1124 -1.3939 5 1 1.5016 2.6169 0.8112 6 1 3.5923 1.4098 0.5825 7 6 2.0081 -1.2124 -0.0005 8 1 1.5086 -2.1244 0.2912 9 6 3.3639 -1.2427 -0.3814 10 6 4.2403 -2.2120 0.1591 11 6 5.5463 -2.1990 -0.2352 12 6 5.9776 -1.2373 -1.1608 13 6 7.3855 -1.2223 -1.5859 14 6 7.9266 -0.3439 -2.4737 15 6 9.3392 -0.7032 -2.5887 16 6 10.4152 -0.1972 -3.3232 17 6 11.6572 -0.7819 -3.2005 18 9 12.7017 -0.2982 -3.9079 19 6 11.8389 -1.8682 -2.3524 20 6 10.7850 -2.3761 -1.6227 21 6 9.5248 -1.8031 -1.7304 22 8 8.3368 -2.0729 -1.1506 23 7 5.1316 -0.3366 -1.6611 24 6 3.8679 -0.3101 -1.3121 25 1 -0.4849 0.8401 -0.0004 26 1 3.8851 -2.9429 0.8704 27 1 6.2423 -2.9229 0.1622 28 1 7.4159 0.4561 -2.9890 29 1 10.2745 0.6471 -3.9819 30 1 12.8164 -2.3187 -2.2633 31 1 10.9396 -3.2208 -0.9677 32 1 3.2096 0.4336 -1.7365 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242705672.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:38 Heat of formation + Delta-G solvation = 3.147359 kcal Electronic energy + Delta-G solvation = -20070.648200 eV Core-core repulsion = 16683.414328 eV Total energy + Delta-G solvation = -3387.233872 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.86918 -42.08875 -38.79853 -37.42642 -34.42655 -32.75424 -31.65003 -31.15244 -29.87710 -28.90335 -25.84119 -23.34200 -22.69964 -22.15013 -21.42468 -20.44644 -18.10781 -17.65249 -17.47327 -16.70902 -16.00399 -15.88936 -15.40099 -15.27805 -14.84602 -14.30407 -13.97192 -13.63079 -13.35828 -13.24944 -12.93178 -12.78375 -12.50444 -12.31124 -11.88372 -11.77831 -11.36047 -11.20944 -10.88085 -10.86995 -10.31634 -10.07051 -9.69181 -8.90163 -8.66133 -8.45807 -8.31812 -7.46632 -7.45102 -4.91597 0.77481 1.21918 1.83675 2.43021 2.79299 2.82571 2.93549 3.02339 3.14019 3.61210 3.64186 4.17384 4.22153 4.55671 4.74693 5.00907 5.11067 5.25447 5.27965 5.47063 5.60047 5.82981 5.97814 6.01647 6.06402 6.11868 6.16019 6.25094 6.29841 6.57662 6.70201 6.72804 6.81521 7.13594 7.14985 7.48490 7.56036 7.76895 8.06952 8.19750 9.05060 9.51519 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.039426 B = 0.003546 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.018571 B = 7894.908773 C = 8437.668872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.078 3.922 3 Si 0.913 3.087 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.242 1.242 7 C -0.396 4.396 8 H 0.102 0.898 9 C 0.047 3.953 10 C -0.186 4.186 11 C -0.085 4.085 12 C -0.008 4.008 13 C 0.158 3.842 14 C -0.230 4.230 15 C -0.083 4.083 16 C -0.120 4.120 17 C 0.080 3.920 18 F -0.143 7.143 19 C -0.148 4.148 20 C -0.071 4.071 21 C 0.029 3.971 22 O -0.191 6.191 23 N -0.418 5.418 24 C -0.020 4.020 25 H 0.296 0.704 26 H 0.116 0.884 27 H 0.112 0.888 28 H 0.161 0.839 29 H 0.137 0.863 30 H 0.142 0.858 31 H 0.138 0.862 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.007 -0.886 -1.856 13.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.183 1.183 5 H -0.207 1.207 6 H -0.165 1.165 7 C -0.422 4.422 8 H 0.120 0.880 9 C 0.042 3.958 10 C -0.211 4.211 11 C -0.105 4.105 12 C -0.139 4.139 13 C 0.109 3.891 14 C -0.250 4.250 15 C -0.084 4.084 16 C -0.139 4.139 17 C 0.061 3.939 18 F -0.122 7.122 19 C -0.166 4.166 20 C -0.089 4.089 21 C -0.019 4.019 22 O -0.092 6.092 23 N -0.126 5.126 24 C -0.188 4.188 25 H 0.107 0.893 26 H 0.134 0.866 27 H 0.130 0.870 28 H 0.179 0.821 29 H 0.155 0.845 30 H 0.159 0.841 31 H 0.156 0.844 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 13.064 -0.438 -2.243 13.262 hybrid contribution -0.043 0.251 0.410 0.482 sum 13.020 -0.188 -1.833 13.150 Atomic orbital electron populations 1.69655 1.08344 1.31675 1.29353 1.26418 0.94965 1.02534 0.90732 0.86262 0.81239 0.78775 0.79999 1.18344 1.20732 1.16549 1.19687 0.92670 0.96510 1.33366 0.88015 1.18744 0.93897 0.92434 0.90760 1.21001 0.92597 1.03577 1.03884 1.21290 0.96458 0.96856 0.95909 1.17309 0.88091 1.01555 1.06966 1.20091 0.87631 0.88047 0.93305 1.22306 0.90707 1.05500 1.06510 1.19731 0.94460 0.96318 0.97920 1.20392 0.90077 1.01707 1.01686 1.17321 0.84125 0.96519 0.95977 1.91475 1.56251 1.87495 1.76937 1.20704 0.99659 0.97495 0.98779 1.19643 0.87448 1.00766 1.01049 1.19604 0.86732 0.98009 0.97539 1.83979 1.15766 1.51143 1.58280 1.66688 1.03725 1.19815 1.22392 1.22439 0.91034 1.03690 1.01610 0.89259 0.86560 0.87019 0.82138 0.84540 0.84057 0.84386 0.84410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.79 13.93 55.55 0.77 -17.01 16 2 C 0.08 1.79 5.41 -17.32 -0.09 1.69 16 3 Si 0.91 18.53 24.52 -169.99 -4.17 14.36 16 4 H -0.26 -5.10 6.71 56.52 0.38 -4.72 16 5 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.24 -5.24 6.86 56.52 0.39 -4.86 16 7 C -0.40 -9.36 9.57 -37.93 -0.36 -9.72 16 8 H 0.10 2.47 8.06 -52.49 -0.42 2.05 16 9 C 0.05 1.10 5.12 -106.63 -0.55 0.55 16 10 C -0.19 -3.98 9.87 -39.03 -0.39 -4.36 16 11 C -0.08 -1.75 9.66 -39.47 -0.38 -2.13 16 12 C -0.01 -0.18 6.75 -82.88 -0.56 -0.73 16 13 C 0.16 3.14 6.97 -36.76 -0.26 2.88 16 14 C -0.23 -4.24 10.76 -37.15 -0.40 -4.64 16 15 C -0.08 -1.38 6.38 -105.18 -0.67 -2.05 16 16 C -0.12 -1.70 10.08 -39.16 -0.39 -2.09 16 17 C 0.08 1.05 7.29 -39.44 -0.29 0.76 16 18 F -0.14 -1.85 17.26 2.25 0.04 -1.81 16 19 C -0.15 -1.71 9.99 -39.43 -0.39 -2.10 16 20 C -0.07 -0.89 10.06 -39.48 -0.40 -1.29 16 21 C 0.03 0.47 7.40 -38.41 -0.28 0.18 16 22 O -0.19 -3.50 10.21 2.54 0.03 -3.47 16 23 N -0.42 -9.64 9.97 -9.20 -0.09 -9.73 16 24 C -0.02 -0.46 8.36 -16.78 -0.14 -0.60 16 25 H 0.30 6.11 8.30 -40.82 -0.34 5.77 16 26 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 27 H 0.11 2.02 7.83 -52.49 -0.41 1.61 16 28 H 0.16 2.86 8.06 -52.49 -0.42 2.43 16 29 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.14 3.08 4.72 -52.48 -0.25 2.84 16 LS Contribution 289.41 15.07 4.36 4.36 Total: -1.00 -25.08 289.41 -6.98 -32.05 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -2.37 Total: 4.90 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -5.55 Total: -23.65 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.68 Total: -26.74 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: 0.03 Total: -3.47 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -4.17 Total: 14.36 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -25.08 -6.98 -32.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242705672.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.201 kcal (2) G-P(sol) polarization free energy of solvation -25.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds