Wall clock time and date at job start Tue Mar 31 2020 05:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30732 * 1 3 3 Si 1.86809 * 120.00065 * 2 1 4 4 H 1.48500 * 109.46857 * 274.64937 * 3 2 1 5 5 H 1.48498 * 109.47012 * 34.64795 * 3 2 1 6 6 H 1.48501 * 109.46987 * 154.65037 * 3 2 1 7 7 C 1.40040 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00344 * 197.03446 * 7 2 1 9 9 C 1.41530 * 119.99773 * 17.03128 * 7 2 1 10 10 C 1.41181 * 120.97723 * 203.28115 * 9 7 2 11 11 C 1.37746 * 119.12445 * 180.02562 * 10 9 7 12 12 N 1.31893 * 121.18814 * 359.97438 * 11 10 9 13 13 C 1.32983 * 122.18425 * 0.02562 * 12 11 10 14 14 C 1.47761 * 119.64277 * 179.97438 * 13 12 11 15 15 C 1.35458 * 125.08211 * 0.02562 * 14 13 12 16 16 C 1.46450 * 106.09070 * 180.02562 * 15 14 13 17 17 C 1.39625 * 134.15756 * 180.02562 * 16 15 14 18 18 C 1.37873 * 119.57324 * 180.21042 * 17 16 15 19 19 F 1.35101 * 119.88425 * 179.72998 * 18 17 16 20 20 C 1.38982 * 120.22535 * 359.52292 * 18 17 16 21 21 C 1.37823 * 120.70040 * 0.47509 * 20 18 17 22 22 C 1.38908 * 120.02824 * 359.76540 * 21 20 18 23 23 O 1.34780 * 125.08695 * 179.97438 * 14 13 12 24 24 C 1.39181 * 120.71511 * 0.25525 * 13 12 11 25 25 H 0.97005 * 120.00180 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.43751 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.40156 * 179.97438 * 11 10 9 28 28 H 1.07993 * 126.95630 * 0.02562 * 15 14 13 29 29 H 1.07997 * 120.21332 * 359.94100 * 17 16 15 30 30 H 1.08006 * 119.64663 * 180.21699 * 20 18 17 31 31 H 1.08001 * 119.98599 * 179.79883 * 21 20 18 32 32 H 1.08002 * 120.62418 * 179.74238 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3906 2.1032 -1.3955 5 1 1.4914 2.6224 0.7960 6 1 3.5846 1.4138 0.5994 7 6 2.0075 -1.2128 -0.0005 8 1 3.0520 -1.2335 0.2734 9 6 1.3464 -2.4114 -0.3601 10 6 1.8274 -3.6653 0.0753 11 6 1.1544 -4.8078 -0.2977 12 7 0.0733 -4.7486 -1.0508 13 6 -0.4228 -3.5949 -1.4884 14 6 -1.6375 -3.5940 -2.3297 15 6 -2.3205 -4.6994 -2.7122 16 6 -3.4400 -4.2230 -3.5274 17 6 -4.4886 -4.8514 -4.2020 18 6 -5.4003 -4.0903 -4.9022 19 9 -6.4143 -4.6921 -5.5617 20 6 -5.2823 -2.7057 -4.9284 21 6 -4.2514 -2.0747 -4.2661 22 6 -3.3189 -2.8226 -3.5585 23 8 -2.2320 -2.4930 -2.8307 24 6 0.1931 -2.3888 -1.1672 25 1 -0.4851 0.8401 0.0004 26 1 2.7114 -3.7279 0.6927 27 1 1.5187 -5.7694 0.0325 28 1 -2.0869 -5.7246 -2.4658 29 1 -4.5825 -5.9271 -4.1790 30 1 -6.0038 -2.1183 -5.4769 31 1 -4.1689 -0.9983 -4.2968 32 1 -0.2087 -1.4530 -1.5268 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242706386.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:41 Heat of formation + Delta-G solvation = -9.208123 kcal Electronic energy + Delta-G solvation = -20290.481975 eV Core-core repulsion = 16902.712330 eV Total energy + Delta-G solvation = -3387.769646 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.91367 -43.48503 -40.20298 -38.61421 -36.14925 -34.16824 -32.77997 -32.24937 -31.06649 -29.48467 -27.98278 -25.02023 -24.09441 -23.36473 -22.71750 -21.96880 -19.63009 -18.81165 -18.48313 -17.65260 -17.35056 -17.14335 -16.49922 -16.37993 -16.20667 -16.11997 -15.37006 -15.04658 -14.48809 -14.38859 -14.34250 -14.12496 -13.85239 -13.62982 -13.26600 -13.00264 -12.91143 -12.73971 -12.05072 -11.99532 -11.90251 -11.46472 -11.27802 -10.20734 -10.09837 -10.01753 -9.49257 -8.90253 -8.74527 -6.64653 -0.50121 0.05562 0.49871 0.89590 1.36833 1.43107 1.49672 1.51970 1.66939 2.14315 2.44390 2.70413 2.97352 3.35938 3.54704 3.61074 3.86397 3.92520 4.11527 4.18416 4.31419 4.55303 4.74776 4.78364 4.83000 4.87011 4.94460 4.98376 5.08024 5.13529 5.23554 5.30994 5.42438 5.62004 5.81281 6.01997 6.13695 6.38413 6.67658 6.71271 7.48054 8.16364 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.021800 B = 0.004333 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.079220 B = 6460.989164 C = 7669.108011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.036 3.964 3 Si 0.990 3.010 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.251 1.251 7 C -0.479 4.479 8 H 0.093 0.907 9 C 0.095 3.905 10 C -0.279 4.279 11 C 0.111 3.889 12 N -0.563 5.563 13 C 0.148 3.852 14 C 0.086 3.914 15 C -0.175 4.175 16 C -0.117 4.117 17 C -0.108 4.108 18 C 0.078 3.922 19 F -0.136 7.136 20 C -0.113 4.113 21 C -0.076 4.076 22 C 0.018 3.982 23 O -0.202 6.202 24 C -0.203 4.203 25 H 0.294 0.706 26 H 0.126 0.874 27 H 0.172 0.828 28 H 0.174 0.826 29 H 0.159 0.841 30 H 0.184 0.816 31 H 0.164 0.836 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.567 -1.729 -7.265 10.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.182 4.182 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.174 1.174 7 C -0.509 4.509 8 H 0.111 0.889 9 C 0.087 3.913 10 C -0.302 4.302 11 C -0.044 4.044 12 N -0.279 5.279 13 C 0.019 3.981 14 C 0.038 3.962 15 C -0.195 4.195 16 C -0.118 4.118 17 C -0.127 4.127 18 C 0.059 3.941 19 F -0.114 7.114 20 C -0.131 4.131 21 C -0.094 4.094 22 C -0.029 4.029 23 O -0.104 6.104 24 C -0.226 4.226 25 H 0.105 0.895 26 H 0.144 0.856 27 H 0.189 0.811 28 H 0.192 0.808 29 H 0.176 0.824 30 H 0.201 0.799 31 H 0.182 0.818 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.171 -2.122 -7.472 11.274 hybrid contribution 0.712 1.216 0.460 1.482 sum -7.459 -0.907 -7.011 10.277 Atomic orbital electron populations 1.69816 1.09431 1.31393 1.32991 1.26963 0.95473 1.05149 0.90652 0.85071 0.79323 0.75156 0.79538 1.18714 1.19044 1.17401 1.20006 0.98630 0.91572 1.40741 0.88942 1.18196 0.90864 0.94124 0.88110 1.22237 1.05708 0.93295 1.08965 1.22451 0.90251 0.98554 0.93139 1.67193 1.16030 1.26618 1.18072 1.18275 0.92146 0.90657 0.97044 1.20146 0.94487 0.83908 0.97694 1.22583 0.95147 0.99593 1.02179 1.19777 0.97599 0.92927 1.01468 1.20581 0.92877 1.01712 0.97492 1.17413 0.87872 0.91435 0.97380 1.91505 1.57349 1.83862 1.78717 1.21192 0.98965 0.92368 1.00622 1.20104 0.91555 1.01315 0.96458 1.20310 0.89979 0.94580 0.98079 1.84017 1.35919 1.34256 1.56191 1.22287 1.00532 0.97012 1.02803 0.89512 0.85644 0.81126 0.80820 0.82355 0.79877 0.81824 0.86660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.42 10.91 21.84 0.24 -41.19 16 2 C 0.04 1.71 5.20 85.29 0.44 2.15 16 3 Si 0.99 36.03 29.59 68.60 2.03 38.06 16 4 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 5 H -0.27 -9.22 7.11 99.48 0.71 -8.52 16 6 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 7 C -0.48 -24.57 9.12 23.52 0.21 -24.36 16 8 H 0.09 4.44 7.90 -2.91 -0.02 4.42 16 9 C 0.09 5.01 5.61 -21.12 -0.12 4.90 16 10 C -0.28 -13.01 9.90 22.88 0.23 -12.78 16 11 C 0.11 4.79 11.15 84.57 0.94 5.73 16 12 N -0.56 -26.44 9.97 -185.61 -1.85 -28.29 16 13 C 0.15 7.44 6.74 41.72 0.28 7.72 16 14 C 0.09 3.86 6.97 24.15 0.17 4.03 16 15 C -0.18 -6.70 10.75 23.77 0.26 -6.44 16 16 C -0.12 -3.90 6.38 -20.23 -0.13 -4.03 16 17 C -0.11 -2.85 10.08 22.52 0.23 -2.62 16 18 C 0.08 1.84 7.29 22.36 0.16 2.00 16 19 F -0.14 -3.03 17.26 44.97 0.78 -2.26 16 20 C -0.11 -2.33 9.99 22.35 0.22 -2.10 16 21 C -0.08 -1.94 10.06 22.33 0.22 -1.72 16 22 C 0.02 0.63 7.40 23.01 0.17 0.80 16 23 O -0.20 -8.82 10.24 -13.11 -0.13 -8.95 16 24 C -0.20 -10.96 8.43 23.12 0.19 -10.77 16 25 H 0.29 13.50 8.29 -92.70 -0.77 12.73 16 26 H 0.13 5.19 8.06 -2.91 -0.02 5.17 16 27 H 0.17 5.77 8.06 -2.91 -0.02 5.75 16 28 H 0.17 6.09 8.06 -2.91 -0.02 6.07 16 29 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.18 2.33 8.06 -2.91 -0.02 2.30 16 31 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 32 H 0.12 6.55 5.98 -2.91 -0.02 6.53 16 Total: -1.00 -61.30 294.87 5.72 -55.59 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 1.17 Total: 24.53 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 3.49 Total: -37.48 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -1.61 Total: -69.48 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.13 Total: -8.95 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.26 kcal Atomic # 14 Polarization: 36.03 SS G_CDS: 2.03 Total: 38.06 kcal Total: -61.30 5.72 -55.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242706386.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.378 kcal (2) G-P(sol) polarization free energy of solvation -61.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds