Wall clock time and date at job start Tue Mar 31 2020 05:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30717 * 1 3 3 Si 1.86794 * 120.00129 * 2 1 4 4 H 1.48494 * 109.47227 * 240.00312 * 3 2 1 5 5 H 1.48501 * 109.47257 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46740 * 120.00376 * 3 2 1 7 7 C 1.40136 * 119.99640 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99995 * 193.20923 * 7 2 1 9 9 C 1.40633 * 120.00400 * 13.20732 * 7 2 1 10 10 C 1.41326 * 121.38126 * 24.90853 * 9 7 2 11 11 C 1.36259 * 119.05155 * 180.29760 * 10 9 7 12 12 N 1.32172 * 122.22970 * 359.69331 * 11 10 9 13 13 C 1.31428 * 123.21257 * 0.02562 * 12 11 10 14 14 C 1.39921 * 120.48091 * 359.97438 * 13 12 11 15 15 C 1.46885 * 121.10571 * 179.97438 * 14 13 12 16 16 C 1.36312 * 125.15604 * 309.97625 * 15 14 13 17 17 C 1.46146 * 106.05559 * 179.97438 * 16 15 14 18 18 C 1.39803 * 134.11203 * 179.97438 * 17 16 15 19 19 C 1.37827 * 119.56725 * 180.02562 * 18 17 16 20 20 F 1.35099 * 119.88448 * 179.97438 * 19 18 17 21 21 C 1.39025 * 120.22905 * 0.25635 * 19 18 17 22 22 C 1.37909 * 120.72931 * 359.48248 * 21 19 18 23 23 C 1.38827 * 120.05046 * 0.51661 * 22 21 19 24 24 O 1.34807 * 125.16176 * 129.97121 * 15 14 13 25 25 H 0.97002 * 119.99579 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.48077 * 0.03484 * 10 9 7 27 27 H 1.07999 * 118.88677 * 179.71698 * 11 10 9 28 28 H 1.08003 * 119.75682 * 180.02562 * 13 12 11 29 29 H 1.08008 * 126.97080 * 0.03072 * 16 15 14 30 30 H 1.08006 * 120.21563 * 0.02562 * 18 17 16 31 31 H 1.07993 * 119.63321 * 179.74334 * 21 19 18 32 32 H 1.08003 * 119.97121 * 180.28272 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 3.0948 1.6964 -1.2125 5 1 1.2762 2.7464 0.0006 6 1 3.0950 1.6962 1.2125 7 6 2.0078 -1.2137 -0.0005 8 1 3.0664 -1.2262 0.2132 9 6 1.3325 -2.4154 -0.2793 10 6 0.1445 -2.4315 -1.0447 11 6 -0.4742 -3.6223 -1.2810 12 7 0.0020 -4.7671 -0.8233 13 6 1.1012 -4.8551 -0.1081 14 6 1.8360 -3.7072 0.2082 15 6 3.0659 -3.7896 1.0069 16 6 3.1880 -4.4478 2.1943 17 6 4.5741 -4.2623 2.6187 18 6 5.3165 -4.6794 3.7274 19 6 6.6440 -4.3231 3.8301 20 9 7.3673 -4.7223 4.8991 21 6 7.2396 -3.5494 2.8405 22 6 6.5189 -3.1364 1.7396 23 6 5.1805 -3.4833 1.6148 24 8 4.2451 -3.2258 0.6770 25 1 -0.4849 0.8401 0.0004 26 1 -0.2694 -1.5127 -1.4332 27 1 -1.3844 -3.6310 -1.8623 28 1 1.4401 -5.8207 0.2373 29 1 2.4170 -4.9962 2.7153 30 1 4.8529 -5.2770 4.4984 31 1 8.2793 -3.2723 2.9328 32 1 6.9952 -2.5395 0.9758 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242707220.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:03 Heat of formation + Delta-G solvation = 0.796341 kcal Electronic energy + Delta-G solvation = -20617.114532 eV Core-core repulsion = 17229.778712 eV Total energy + Delta-G solvation = -3387.335820 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.73429 -41.82306 -38.27133 -37.20186 -34.49440 -32.66523 -31.20960 -30.37471 -29.65436 -27.98890 -26.17794 -23.50582 -22.26312 -21.85100 -21.18346 -20.29624 -17.89374 -17.43324 -17.13653 -16.24890 -15.94455 -15.60386 -15.21736 -14.86731 -14.69045 -14.40028 -14.07688 -13.27498 -13.23289 -12.89535 -12.63377 -12.46649 -12.33944 -12.17645 -11.68937 -11.59747 -11.45871 -11.18406 -10.76643 -10.53914 -10.17660 -9.80855 -9.73260 -8.48441 -8.22143 -8.16582 -8.10614 -7.32091 -7.19709 -4.93866 1.03237 1.41656 2.11714 2.60340 2.84674 2.87720 3.04387 3.06509 3.35352 3.61341 3.79061 4.33813 4.35995 4.74905 4.94889 5.18521 5.31234 5.45718 5.54500 5.61867 5.77274 6.00359 6.08085 6.15242 6.22995 6.30011 6.49368 6.55061 6.61568 6.76086 6.87383 6.98023 7.05634 7.22068 7.52857 7.67537 7.79280 8.14038 8.33727 8.40824 9.41330 9.66541 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.005633 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.607823 B = 4969.877640 C = 6335.822438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.417 4.417 8 H 0.092 0.908 9 C 0.151 3.849 10 C -0.212 4.212 11 C 0.095 3.905 12 N -0.583 5.583 13 C 0.165 3.835 14 C -0.255 4.255 15 C 0.189 3.811 16 C -0.259 4.259 17 C -0.081 4.081 18 C -0.122 4.122 19 C 0.077 3.923 20 F -0.145 7.145 21 C -0.150 4.150 22 C -0.071 4.071 23 C 0.027 3.973 24 O -0.183 6.183 25 H 0.292 0.708 26 H 0.133 0.867 27 H 0.121 0.879 28 H 0.129 0.871 29 H 0.154 0.846 30 H 0.134 0.866 31 H 0.139 0.861 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.750 -1.222 3.136 8.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.150 4.150 3 Si 0.742 3.258 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.183 1.183 7 C -0.446 4.446 8 H 0.110 0.890 9 C 0.143 3.857 10 C -0.233 4.233 11 C -0.051 4.051 12 N -0.298 5.298 13 C 0.005 3.995 14 C -0.261 4.261 15 C 0.140 3.860 16 C -0.278 4.278 17 C -0.082 4.082 18 C -0.141 4.141 19 C 0.058 3.942 20 F -0.124 7.124 21 C -0.169 4.169 22 C -0.090 4.090 23 C -0.020 4.020 24 O -0.084 6.084 25 H 0.103 0.897 26 H 0.150 0.850 27 H 0.139 0.861 28 H 0.146 0.854 29 H 0.172 0.828 30 H 0.152 0.848 31 H 0.157 0.843 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.077 -1.641 2.705 7.753 hybrid contribution 0.831 1.469 0.620 1.798 sum 7.908 -0.172 3.325 8.581 Atomic orbital electron populations 1.69726 1.07933 1.30707 1.30131 1.26184 0.94963 1.02272 0.91581 0.86140 0.80206 0.78709 0.80751 1.18116 1.19665 1.18311 1.19771 0.97462 0.90281 1.37064 0.88959 1.18788 0.90546 0.90362 0.86003 1.21955 0.99120 0.98522 1.03750 1.21688 0.97838 0.88632 0.96936 1.67135 1.15583 1.29111 1.17938 1.22085 0.89971 0.95125 0.92311 1.19721 0.96188 0.96002 1.14226 1.20544 0.83141 0.89425 0.92859 1.22309 0.94856 1.12465 0.98189 1.19663 0.94549 0.99159 0.94837 1.20358 0.92022 1.02988 0.98731 1.17303 0.89859 1.00952 0.86137 1.91460 1.77560 1.89390 1.53957 1.20679 1.00750 1.01509 0.93942 1.19675 0.89343 1.01360 0.98587 1.19691 0.91400 1.00767 0.90192 1.84237 1.17877 1.63667 1.42596 0.89697 0.84966 0.86109 0.85381 0.82837 0.84774 0.84280 0.84506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.58 10.80 55.56 0.60 -16.98 16 2 C 0.07 1.67 5.27 -17.31 -0.09 1.58 16 3 Si 0.92 17.08 29.58 -169.99 -5.03 12.05 16 4 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 5 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 6 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 7 C -0.42 -10.23 8.66 -37.97 -0.33 -10.56 16 8 H 0.09 2.25 6.44 -52.48 -0.34 1.91 16 9 C 0.15 3.76 5.77 -104.29 -0.60 3.16 16 10 C -0.21 -5.07 8.74 -39.12 -0.34 -5.41 16 11 C 0.09 2.13 11.04 -18.12 -0.20 1.93 16 12 N -0.58 -13.38 10.26 -13.32 -0.14 -13.51 16 13 C 0.17 3.64 10.91 -17.09 -0.19 3.45 16 14 C -0.25 -5.93 5.99 -102.24 -0.61 -6.55 16 15 C 0.19 4.07 6.12 -36.78 -0.23 3.84 16 16 C -0.26 -4.95 10.98 -37.10 -0.41 -5.36 16 17 C -0.08 -1.45 6.38 -105.18 -0.67 -2.13 16 18 C -0.12 -1.89 10.09 -39.15 -0.39 -2.28 16 19 C 0.08 1.12 7.29 -39.44 -0.29 0.83 16 20 F -0.14 -2.05 17.26 2.25 0.04 -2.01 16 21 C -0.15 -2.00 9.99 -39.41 -0.39 -2.40 16 22 C -0.07 -1.05 10.05 -39.48 -0.40 -1.45 16 23 C 0.03 0.50 7.40 -38.40 -0.28 0.22 16 24 O -0.18 -3.87 9.34 2.54 0.02 -3.85 16 25 H 0.29 6.03 8.29 -40.82 -0.34 5.69 16 26 H 0.13 3.17 6.16 -52.49 -0.32 2.85 16 27 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 28 H 0.13 2.44 8.06 -52.48 -0.42 2.02 16 29 H 0.15 2.64 8.06 -52.48 -0.42 2.21 16 30 H 0.13 1.80 8.06 -52.48 -0.42 1.37 16 31 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.14 1.68 8.06 -52.48 -0.42 1.25 16 LS Contribution 292.47 15.07 4.41 4.41 Total: -1.00 -26.12 292.47 -7.85 -33.97 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -2.33 Total: 7.05 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -5.42 Total: -21.13 kcal Atomic # 7 Polarization: -30.95 SS G_CDS: 0.46 Total: -30.49 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: 0.02 Total: -3.85 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.05 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -26.12 -7.85 -33.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242707220.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.769 kcal (2) G-P(sol) polarization free energy of solvation -26.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds