Wall clock time and date at job start Tue Mar 31 2020 05:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30717 * 1 3 3 Si 1.86794 * 120.00129 * 2 1 4 4 H 1.48494 * 109.47227 * 240.00312 * 3 2 1 5 5 H 1.48501 * 109.47257 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46740 * 120.00376 * 3 2 1 7 7 C 1.40136 * 119.99640 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99995 * 193.20923 * 7 2 1 9 9 C 1.40633 * 120.00400 * 13.20732 * 7 2 1 10 10 C 1.41326 * 121.38126 * 24.90853 * 9 7 2 11 11 C 1.36259 * 119.05155 * 180.29760 * 10 9 7 12 12 N 1.32172 * 122.22970 * 359.69331 * 11 10 9 13 13 C 1.31428 * 123.21257 * 0.02562 * 12 11 10 14 14 C 1.39921 * 120.48091 * 359.97438 * 13 12 11 15 15 C 1.46885 * 121.10571 * 179.97438 * 14 13 12 16 16 C 1.36312 * 125.15604 * 309.97625 * 15 14 13 17 17 C 1.46146 * 106.05559 * 179.97438 * 16 15 14 18 18 C 1.39803 * 134.11203 * 179.97438 * 17 16 15 19 19 C 1.37827 * 119.56725 * 180.02562 * 18 17 16 20 20 F 1.35099 * 119.88448 * 179.97438 * 19 18 17 21 21 C 1.39025 * 120.22905 * 0.25635 * 19 18 17 22 22 C 1.37909 * 120.72931 * 359.48248 * 21 19 18 23 23 C 1.38827 * 120.05046 * 0.51661 * 22 21 19 24 24 O 1.34807 * 125.16176 * 129.97121 * 15 14 13 25 25 H 0.97002 * 119.99579 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.48077 * 0.03484 * 10 9 7 27 27 H 1.07999 * 118.88677 * 179.71698 * 11 10 9 28 28 H 1.08003 * 119.75682 * 180.02562 * 13 12 11 29 29 H 1.08008 * 126.97080 * 0.03072 * 16 15 14 30 30 H 1.08006 * 120.21563 * 0.02562 * 18 17 16 31 31 H 1.07993 * 119.63321 * 179.74334 * 21 19 18 32 32 H 1.08003 * 119.97121 * 180.28272 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 3.0948 1.6964 -1.2125 5 1 1.2762 2.7464 0.0006 6 1 3.0950 1.6962 1.2125 7 6 2.0078 -1.2137 -0.0005 8 1 3.0664 -1.2262 0.2132 9 6 1.3325 -2.4154 -0.2793 10 6 0.1445 -2.4315 -1.0447 11 6 -0.4742 -3.6223 -1.2810 12 7 0.0020 -4.7671 -0.8233 13 6 1.1012 -4.8551 -0.1081 14 6 1.8360 -3.7072 0.2082 15 6 3.0659 -3.7896 1.0069 16 6 3.1880 -4.4478 2.1943 17 6 4.5741 -4.2623 2.6187 18 6 5.3165 -4.6794 3.7274 19 6 6.6440 -4.3231 3.8301 20 9 7.3673 -4.7223 4.8991 21 6 7.2396 -3.5494 2.8405 22 6 6.5189 -3.1364 1.7396 23 6 5.1805 -3.4833 1.6148 24 8 4.2451 -3.2258 0.6770 25 1 -0.4849 0.8401 0.0004 26 1 -0.2694 -1.5127 -1.4332 27 1 -1.3844 -3.6310 -1.8623 28 1 1.4401 -5.8207 0.2373 29 1 2.4170 -4.9962 2.7153 30 1 4.8529 -5.2770 4.4984 31 1 8.2793 -3.2723 2.9328 32 1 6.9952 -2.5395 0.9758 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242707220.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:03 Heat of formation + Delta-G solvation = -11.137532 kcal Electronic energy + Delta-G solvation = -20617.632023 eV Core-core repulsion = 17229.778712 eV Total energy + Delta-G solvation = -3387.853311 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.87992 -43.24991 -39.99733 -38.48488 -36.22771 -34.14189 -32.79660 -32.04252 -30.93549 -29.50871 -27.88949 -24.97346 -23.68197 -23.45235 -22.63621 -21.83475 -19.63956 -18.73488 -18.47626 -17.70693 -17.44736 -17.07379 -16.50434 -16.32078 -16.23821 -16.05951 -15.28240 -14.83328 -14.53741 -14.36021 -14.18210 -14.00777 -13.85967 -13.55824 -13.36161 -13.10088 -12.89891 -12.72841 -12.08691 -12.00079 -11.86176 -11.39655 -11.18580 -10.13065 -9.99770 -9.87946 -9.40982 -8.90067 -8.85060 -6.74043 -0.27233 0.15127 0.49872 0.90574 1.31760 1.43917 1.50522 1.54226 1.90168 2.07964 2.53380 2.62134 3.10733 3.49950 3.56721 3.71092 3.92484 3.99933 4.21251 4.28149 4.37881 4.41023 4.71715 4.77009 4.84988 4.86685 5.01431 5.05292 5.08019 5.19598 5.32552 5.41972 5.46845 5.70348 5.76603 5.98558 6.25816 6.35590 6.56283 6.62449 7.63581 8.00864 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.005633 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.607823 B = 4969.877640 C = 6335.822438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.039 3.961 3 Si 0.985 3.015 4 H -0.254 1.254 5 H -0.255 1.255 6 H -0.261 1.261 7 C -0.446 4.446 8 H 0.083 0.917 9 C 0.121 3.879 10 C -0.232 4.232 11 C 0.093 3.907 12 N -0.593 5.593 13 C 0.158 3.842 14 C -0.263 4.263 15 C 0.150 3.850 16 C -0.244 4.244 17 C -0.104 4.104 18 C -0.121 4.121 19 C 0.077 3.923 20 F -0.139 7.139 21 C -0.127 4.127 22 C -0.074 4.074 23 C 0.004 3.996 24 O -0.204 6.204 25 H 0.302 0.698 26 H 0.126 0.874 27 H 0.148 0.852 28 H 0.155 0.845 29 H 0.168 0.832 30 H 0.153 0.847 31 H 0.179 0.821 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.789 -0.950 4.307 10.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.182 4.182 3 Si 0.804 3.196 4 H -0.178 1.178 5 H -0.179 1.179 6 H -0.186 1.186 7 C -0.474 4.474 8 H 0.101 0.899 9 C 0.113 3.887 10 C -0.254 4.254 11 C -0.053 4.053 12 N -0.308 5.308 13 C -0.001 4.001 14 C -0.269 4.269 15 C 0.102 3.898 16 C -0.263 4.263 17 C -0.105 4.105 18 C -0.139 4.139 19 C 0.058 3.942 20 F -0.117 7.117 21 C -0.145 4.145 22 C -0.093 4.093 23 C -0.043 4.043 24 O -0.106 6.106 25 H 0.113 0.887 26 H 0.144 0.856 27 H 0.165 0.835 28 H 0.172 0.828 29 H 0.185 0.815 30 H 0.171 0.829 31 H 0.197 0.803 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 9.115 -1.398 3.887 10.007 hybrid contribution 0.363 1.270 0.402 1.380 sum 9.478 -0.128 4.289 10.404 Atomic orbital electron populations 1.69739 1.09026 1.32107 1.30149 1.26958 0.95690 1.04849 0.90716 0.85190 0.79070 0.74934 0.80444 1.17838 1.17898 1.18555 1.19898 0.97286 0.91403 1.38817 0.89866 1.19201 0.91312 0.91487 0.86679 1.21954 0.99773 0.98869 1.04811 1.22061 0.98437 0.88155 0.96636 1.67215 1.16088 1.29105 1.18385 1.22501 0.89700 0.95994 0.91877 1.19978 0.97223 0.95786 1.13896 1.20410 0.83199 0.92122 0.94092 1.22564 0.95958 1.10660 0.97113 1.19752 0.94149 1.00514 0.96046 1.20563 0.92486 1.02671 0.98215 1.17423 0.89602 1.00712 0.86464 1.91486 1.77257 1.89291 1.53701 1.21129 1.02212 0.99013 0.92143 1.20084 0.87952 1.01448 0.99776 1.20297 0.92427 1.01617 0.89967 1.84151 1.18325 1.64211 1.43941 0.88686 0.85643 0.83506 0.82760 0.81462 0.82907 0.80334 0.82006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.07 10.80 21.86 0.24 -36.83 16 2 C 0.04 1.80 5.27 85.32 0.45 2.24 16 3 Si 0.98 35.03 29.58 68.60 2.03 37.06 16 4 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 5 H -0.26 -8.31 7.11 99.48 0.71 -7.60 16 6 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 7 C -0.45 -22.74 8.66 23.32 0.20 -22.53 16 8 H 0.08 4.26 6.44 -2.91 -0.02 4.24 16 9 C 0.12 6.29 5.77 -19.65 -0.11 6.18 16 10 C -0.23 -11.54 8.74 22.57 0.20 -11.35 16 11 C 0.09 4.28 11.04 84.18 0.93 5.21 16 12 N -0.59 -27.45 10.26 -196.06 -2.01 -29.46 16 13 C 0.16 7.07 10.91 85.16 0.93 7.99 16 14 C -0.26 -12.65 5.99 -18.32 -0.11 -12.76 16 15 C 0.15 6.64 6.12 24.09 0.15 6.78 16 16 C -0.24 -9.36 10.98 23.87 0.26 -9.10 16 17 C -0.10 -3.63 6.38 -20.22 -0.13 -3.75 16 18 C -0.12 -3.45 10.09 22.55 0.23 -3.23 16 19 C 0.08 1.99 7.29 22.36 0.16 2.15 16 20 F -0.14 -3.40 17.26 44.97 0.78 -2.63 16 21 C -0.13 -2.87 9.99 22.38 0.22 -2.65 16 22 C -0.07 -2.01 10.05 22.33 0.22 -1.79 16 23 C 0.00 0.15 7.40 23.03 0.17 0.32 16 24 O -0.20 -8.89 9.34 -13.84 -0.13 -9.02 16 25 H 0.30 12.56 8.29 -92.71 -0.77 11.79 16 26 H 0.13 6.28 6.16 -2.91 -0.02 6.26 16 27 H 0.15 5.76 8.06 -2.91 -0.02 5.74 16 28 H 0.16 5.87 8.06 -2.91 -0.02 5.85 16 29 H 0.17 5.69 8.06 -2.91 -0.02 5.67 16 30 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 31 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 32 H 0.16 3.50 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -58.00 292.47 5.85 -52.15 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 1.17 Total: 25.00 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 3.77 Total: -36.28 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: -1.78 Total: -66.29 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.13 Total: -9.02 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.78 Total: -2.63 kcal Atomic # 14 Polarization: 35.03 SS G_CDS: 2.03 Total: 37.06 kcal Total: -58.00 5.85 -52.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242707220.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.017 kcal (2) G-P(sol) polarization free energy of solvation -58.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds