Wall clock time and date at job start Tue Mar 31 2020 05:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86803 * 119.99895 * 2 1 4 4 H 1.48508 * 109.46742 * 269.99891 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99748 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00089 * 3 2 1 7 7 C 1.40037 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99630 * 179.97438 * 7 2 1 9 9 C 1.41430 * 120.00173 * 0.27906 * 7 2 1 10 10 C 1.40413 * 119.77179 * 179.44553 * 9 7 2 11 11 C 1.39590 * 118.80092 * 179.75384 * 10 9 7 12 12 C 1.47795 * 120.84605 * 180.24320 * 11 10 9 13 13 C 1.35445 * 125.08318 * 180.02562 * 12 11 10 14 14 C 1.46453 * 106.09420 * 179.91783 * 13 12 11 15 15 C 1.39616 * 134.16134 * 180.11119 * 14 13 12 16 16 C 1.37871 * 119.57927 * 180.24910 * 15 14 13 17 17 F 1.35093 * 119.89192 * 179.97438 * 16 15 14 18 18 C 1.38985 * 120.22167 * 359.97438 * 16 15 14 19 19 C 1.37826 * 120.69983 * 0.02562 * 18 16 15 20 20 C 1.38911 * 120.03125 * 359.97438 * 19 18 16 21 21 O 1.34770 * 125.08357 * 0.29956 * 12 11 10 22 22 C 1.40278 * 118.30754 * 0.51329 * 11 10 9 23 23 C 1.38405 * 119.39706 * 359.74771 * 22 11 10 24 24 N 1.31517 * 121.18214 * 359.97438 * 23 22 11 25 25 H 0.96991 * 119.99866 * 0.02562 * 1 2 3 26 26 H 1.08007 * 120.59745 * 0.02562 * 10 9 7 27 27 H 1.08001 * 126.95706 * 0.02655 * 13 12 11 28 28 H 1.08000 * 120.21282 * 0.26226 * 15 14 13 29 29 H 1.07998 * 119.64703 * 179.97438 * 18 16 15 30 30 H 1.08005 * 119.98653 * 180.02562 * 19 18 16 31 31 H 1.08004 * 120.29808 * 179.72776 * 22 11 10 32 32 H 1.08001 * 119.40807 * 180.02562 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0464 -1.4002 5 1 1.4388 2.6527 0.7000 6 1 3.5390 1.4402 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0877 -1.2127 0.0001 9 6 1.3005 -2.4376 -0.0049 10 6 2.0075 -3.6507 -0.0161 11 6 1.2893 -4.8477 -0.0160 12 6 1.9874 -6.1503 -0.0222 13 6 1.3782 -7.3600 -0.0231 14 6 2.4523 -8.3555 -0.0319 15 6 2.4849 -9.7513 -0.0387 16 6 3.6995 -10.4037 -0.0412 17 9 3.7383 -11.7540 -0.0472 18 6 4.8840 -9.6768 -0.0376 19 6 4.8639 -8.2987 -0.0309 20 6 3.6513 -7.6211 -0.0283 21 8 3.3253 -6.3122 -0.0225 22 6 -0.1120 -4.7826 -0.0158 23 6 -0.7347 -3.5465 -0.0103 24 7 -0.0362 -2.4322 -0.0048 25 1 -0.4849 0.8400 -0.0004 26 1 3.0875 -3.6576 -0.0202 27 1 0.3153 -7.5518 -0.0200 28 1 1.5645 -10.3164 -0.0422 29 1 5.8303 -10.1973 -0.0392 30 1 5.7914 -7.7453 -0.0286 31 1 -0.6996 -5.6888 -0.0201 32 1 -1.8135 -3.4962 -0.0096 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242707280.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:57 Heat of formation + Delta-G solvation = 13.663728 kcal Electronic energy + Delta-G solvation = -20002.404384 eV Core-core repulsion = 16615.626536 eV Total energy + Delta-G solvation = -3386.777848 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.95663 -42.26873 -38.32906 -37.51650 -33.96263 -32.94590 -31.51435 -30.29913 -29.90078 -28.26399 -25.91145 -23.76637 -22.71463 -21.88704 -21.29005 -20.47572 -18.09353 -17.66015 -17.20608 -16.16915 -16.10502 -15.59446 -15.48575 -15.02540 -14.41147 -14.35938 -14.31494 -13.56965 -13.40088 -12.99691 -12.65161 -12.60962 -12.44401 -12.18033 -11.86950 -11.31977 -11.29455 -11.03799 -10.87550 -10.60069 -10.34010 -10.04057 -9.55843 -9.01569 -8.43162 -7.85802 -7.77778 -7.56876 -6.55696 -4.68721 0.67266 1.11625 1.96119 2.60246 2.78354 3.02438 3.04593 3.07249 3.32104 3.50922 3.84917 4.05494 4.43997 4.61608 4.62803 4.89006 5.13830 5.22889 5.33484 5.69983 5.71782 5.75957 5.90955 5.95821 5.97804 6.13926 6.19673 6.44074 6.51295 6.55248 6.69173 6.92467 7.07215 7.20457 7.29456 7.50345 7.76164 8.06867 8.46429 8.72670 9.91755 10.16432 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.037003 B = 0.003372 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.520961 B = 8301.658892 C = 9048.330663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.067 3.933 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.423 4.423 8 H 0.087 0.913 9 C 0.251 3.749 10 C -0.235 4.235 11 C 0.010 3.990 12 C 0.130 3.870 13 C -0.221 4.221 14 C -0.092 4.092 15 C -0.113 4.113 16 C 0.079 3.921 17 F -0.141 7.141 18 C -0.139 4.139 19 C -0.072 4.072 20 C 0.037 3.963 21 O -0.183 6.183 22 C -0.291 4.291 23 C 0.130 3.870 24 N -0.477 5.477 25 H 0.275 0.725 26 H 0.108 0.892 27 H 0.162 0.838 28 H 0.138 0.862 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.103 0.897 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.008 -12.180 -0.057 13.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.159 4.159 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.454 4.454 8 H 0.105 0.895 9 C 0.127 3.873 10 C -0.258 4.258 11 C 0.004 3.996 12 C 0.082 3.918 13 C -0.240 4.240 14 C -0.093 4.093 15 C -0.132 4.132 16 C 0.059 3.941 17 F -0.120 7.120 18 C -0.158 4.158 19 C -0.090 4.090 20 C -0.011 4.011 21 O -0.084 6.084 22 C -0.314 4.314 23 C -0.036 4.036 24 N -0.190 5.190 25 H 0.087 0.913 26 H 0.126 0.874 27 H 0.179 0.821 28 H 0.156 0.844 29 H 0.162 0.838 30 H 0.159 0.841 31 H 0.121 0.879 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.616 -11.030 -0.047 11.957 hybrid contribution 0.681 -0.560 -0.017 0.882 sum 5.296 -11.591 -0.064 12.744 Atomic orbital electron populations 1.70115 1.07258 1.28153 1.27608 1.26099 0.94975 1.01269 0.93573 0.86274 0.80469 0.80471 0.79375 1.19262 1.19974 1.18410 1.19693 0.94464 0.89286 1.41988 0.89517 1.18547 0.88301 0.91580 0.88901 1.21995 0.99083 0.92388 1.12330 1.17748 0.92586 0.87016 1.02253 1.20982 0.78758 0.95320 0.96703 1.22330 0.99213 0.89332 1.13112 1.19668 0.93374 0.93245 1.03059 1.20377 0.97231 0.92536 1.03082 1.17321 0.94131 0.76844 1.05754 1.91482 1.97347 1.28852 1.94297 1.20763 0.97617 0.92928 1.04456 1.19714 0.94903 0.92442 1.01952 1.19672 0.95399 0.81822 1.04206 1.84082 1.24319 1.24174 1.75803 1.21182 0.91816 0.98676 1.19723 1.22464 0.99082 0.88114 0.93905 1.68745 1.07151 1.26886 1.16224 0.91333 0.87357 0.82074 0.84372 0.83811 0.84080 0.87889 0.85551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.19 11.46 55.55 0.64 -17.56 16 2 C 0.07 1.64 5.50 -17.34 -0.10 1.54 16 3 Si 0.91 17.87 29.56 -169.99 -5.02 12.85 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.42 -10.92 9.14 -37.69 -0.34 -11.26 16 8 H 0.09 2.08 7.85 -52.49 -0.41 1.67 16 9 C 0.25 6.62 6.55 -85.03 -0.56 6.06 16 10 C -0.23 -5.64 9.52 -38.26 -0.36 -6.00 16 11 C 0.01 0.22 5.90 -104.72 -0.62 -0.40 16 12 C 0.13 2.51 6.99 -36.67 -0.26 2.26 16 13 C -0.22 -3.67 10.49 -37.27 -0.39 -4.06 16 14 C -0.09 -1.43 6.38 -105.18 -0.67 -2.10 16 15 C -0.11 -1.49 10.08 -39.20 -0.40 -1.88 16 16 C 0.08 0.97 7.29 -39.44 -0.29 0.68 16 17 F -0.14 -1.72 17.26 2.25 0.04 -1.68 16 18 C -0.14 -1.53 9.99 -39.46 -0.39 -1.93 16 19 C -0.07 -0.89 10.06 -39.48 -0.40 -1.28 16 20 C 0.04 0.59 7.40 -38.44 -0.28 0.30 16 21 O -0.18 -3.42 10.35 2.77 0.03 -3.39 16 22 C -0.29 -6.12 9.63 -38.75 -0.37 -6.49 16 23 C 0.13 2.96 11.16 -17.62 -0.20 2.76 16 24 N -0.48 -12.61 7.84 -11.23 -0.09 -12.69 16 25 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 26 H 0.11 2.47 7.95 -52.48 -0.42 2.06 16 27 H 0.16 2.33 7.26 -52.49 -0.38 1.95 16 28 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 31 H 0.10 1.84 7.03 -52.48 -0.37 1.47 16 32 H 0.13 2.50 8.06 -52.49 -0.42 2.07 16 LS Contribution 294.50 15.07 4.44 4.44 Total: -1.00 -28.08 294.50 -8.00 -36.08 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -2.40 Total: 3.75 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -5.63 Total: -21.80 kcal Atomic # 7 Polarization: -30.80 SS G_CDS: 0.55 Total: -30.25 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: 0.03 Total: -3.39 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.02 Total: 12.85 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.08 -8.00 -36.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242707280.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.747 kcal (2) G-P(sol) polarization free energy of solvation -28.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds