Wall clock time and date at job start Tue Mar 31 2020 05:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30727 * 1 3 3 Si 1.86804 * 120.00390 * 2 1 4 4 H 1.48495 * 109.47035 * 274.98808 * 3 2 1 5 5 H 1.48495 * 109.47141 * 34.99213 * 3 2 1 6 6 H 1.48498 * 109.46955 * 154.98947 * 3 2 1 7 7 C 1.40109 * 119.99623 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99895 * 186.09701 * 7 2 1 9 9 C 1.40512 * 120.00068 * 6.10033 * 7 2 1 10 10 N 1.33897 * 120.28662 * 353.38358 * 9 7 2 11 11 C 1.31137 * 121.60374 * 180.29741 * 10 9 7 12 12 C 1.39008 * 122.06952 * 359.72755 * 11 10 9 13 13 C 1.38052 * 120.36743 * 359.97438 * 12 11 10 14 14 C 1.40245 * 118.41940 * 359.97438 * 13 12 11 15 15 C 1.46842 * 120.94723 * 180.02562 * 14 13 12 16 16 C 1.36337 * 125.15865 * 309.97741 * 15 14 13 17 17 C 1.46136 * 106.05049 * 179.97438 * 16 15 14 18 18 C 1.39812 * 134.10198 * 180.32731 * 17 16 15 19 19 C 1.37821 * 119.56359 * 180.13975 * 18 17 16 20 20 F 1.35105 * 119.88365 * 179.79721 * 19 18 17 21 21 C 1.39024 * 120.23099 * 359.51520 * 19 18 17 22 22 C 1.37900 * 120.73530 * 0.23587 * 21 19 18 23 23 C 1.38843 * 120.04971 * 359.97438 * 22 21 19 24 24 O 1.34821 * 125.16209 * 129.97284 * 15 14 13 25 25 H 0.97003 * 119.99102 * 359.97438 * 1 2 3 26 26 H 1.07993 * 118.96913 * 179.71208 * 11 10 9 27 27 H 1.08002 * 119.81226 * 179.97438 * 12 11 10 28 28 H 1.07998 * 120.79423 * 179.97438 * 13 12 11 29 29 H 1.08001 * 126.97029 * 359.95459 * 16 15 14 30 30 H 1.07997 * 120.22081 * 359.93144 * 18 17 16 31 31 H 1.08000 * 119.63641 * 180.25754 * 21 19 18 32 32 H 1.07992 * 119.97918 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3835 2.1072 -1.3947 5 1 1.4957 2.6199 0.8029 6 1 3.5877 1.4119 0.5919 7 6 2.0077 -1.2134 -0.0005 8 1 3.0832 -1.2162 0.0988 9 6 1.3111 -2.4268 -0.1304 10 7 -0.0278 -2.4410 -0.1211 11 6 -0.7039 -3.5589 -0.2346 12 6 -0.0752 -4.7906 -0.3764 13 6 1.3026 -4.8719 -0.4026 14 6 2.0436 -3.6872 -0.2837 15 6 3.5117 -3.7093 -0.3051 16 6 4.2958 -4.5251 0.4554 17 6 5.6767 -4.2013 0.1034 18 6 6.9238 -4.6788 0.5173 19 6 8.0716 -4.1423 -0.0253 20 9 9.2802 -4.5961 0.3730 21 6 7.9898 -3.1400 -0.9852 22 6 6.7654 -2.6645 -1.4051 23 6 5.5958 -3.1868 -0.8695 24 8 4.2888 -2.9260 -1.0799 25 1 -0.4849 0.8401 0.0004 26 1 -1.7831 -3.5216 -0.2172 27 1 -0.6681 -5.6888 -0.4666 28 1 1.7982 -5.8252 -0.5121 29 1 3.9637 -5.2611 1.1727 30 1 6.9875 -5.4605 1.2597 31 1 8.8953 -2.7293 -1.4070 32 1 6.7161 -1.8859 -2.1518 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242708022.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:42 Heat of formation + Delta-G solvation = 9.955672 kcal Electronic energy + Delta-G solvation = -20637.024689 eV Core-core repulsion = 17250.086047 eV Total energy + Delta-G solvation = -3386.938641 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.73502 -41.81748 -38.08959 -37.17617 -33.98959 -32.70749 -31.23858 -30.42440 -29.66670 -28.09278 -25.89789 -23.53008 -22.24057 -21.80014 -21.14655 -20.25419 -17.75164 -17.44868 -17.16761 -16.30473 -15.93330 -15.55519 -15.16091 -14.95286 -14.51234 -14.27989 -14.06962 -13.24833 -13.22247 -12.78628 -12.57144 -12.33003 -12.17359 -11.99022 -11.58628 -11.39013 -11.30622 -11.18696 -10.75865 -10.65970 -10.24500 -9.85609 -9.64292 -8.68104 -8.18930 -8.06994 -7.84514 -7.33121 -6.75385 -4.83811 1.03435 1.41963 2.16807 2.67476 2.93982 2.98871 3.05155 3.07159 3.42163 3.73057 3.79103 4.33785 4.46121 4.75293 4.95001 5.18653 5.46058 5.52853 5.59967 5.72255 5.86476 5.96950 6.04078 6.13588 6.23216 6.28010 6.35777 6.50129 6.54825 6.76895 6.87402 6.91504 7.06425 7.23445 7.44930 7.70844 7.77331 7.95678 8.27551 8.59826 9.77793 9.94224 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.016527 B = 0.005671 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.739925 B = 4936.518753 C = 6371.434953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.693 5.693 2 C 0.064 3.936 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.388 4.388 8 H 0.091 0.909 9 C 0.272 3.728 10 N -0.485 5.485 11 C 0.152 3.848 12 C -0.328 4.328 13 C -0.001 4.001 14 C -0.256 4.256 15 C 0.189 3.811 16 C -0.263 4.263 17 C -0.082 4.082 18 C -0.123 4.123 19 C 0.077 3.923 20 F -0.145 7.145 21 C -0.150 4.150 22 C -0.070 4.070 23 C 0.027 3.973 24 O -0.179 6.179 25 H 0.281 0.719 26 H 0.123 0.877 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.152 0.848 30 H 0.134 0.866 31 H 0.140 0.860 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.144 -3.142 -0.891 8.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.312 5.312 2 C -0.165 4.165 3 Si 0.735 3.265 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.416 4.416 8 H 0.109 0.891 9 C 0.150 3.850 10 N -0.196 5.196 11 C -0.019 4.019 12 C -0.351 4.351 13 C -0.025 4.025 14 C -0.261 4.261 15 C 0.140 3.860 16 C -0.283 4.283 17 C -0.083 4.083 18 C -0.142 4.142 19 C 0.058 3.942 20 F -0.124 7.124 21 C -0.169 4.169 22 C -0.089 4.089 23 C -0.021 4.021 24 O -0.080 6.080 25 H 0.092 0.908 26 H 0.140 0.860 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.170 0.830 30 H 0.152 0.848 31 H 0.157 0.843 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.506 -1.953 -0.962 7.815 hybrid contribution 0.991 -0.404 0.082 1.073 sum 8.497 -2.356 -0.880 8.862 Atomic orbital electron populations 1.70105 1.07455 1.28899 1.24733 1.26234 0.95059 1.01749 0.93477 0.86196 0.80777 0.79878 0.79639 1.18883 1.19574 1.17991 1.19724 0.95326 0.89435 1.37116 0.89053 1.19641 0.87775 0.89947 0.87628 1.68837 1.06932 1.26104 1.17729 1.22621 0.99059 0.88784 0.91432 1.21059 0.94226 0.98373 1.21447 1.20808 0.93654 0.95011 0.93016 1.19354 0.85589 0.95799 1.25368 1.20578 0.90612 0.86794 0.88009 1.22317 0.88844 1.08796 1.08295 1.19666 0.93702 0.97295 0.97626 1.20347 0.89452 1.02073 1.02317 1.17302 0.79968 0.98005 0.98971 1.91461 1.42651 1.88311 1.89955 1.20679 0.97822 0.98868 0.99527 1.19689 0.87490 1.00738 1.00975 1.19712 0.84306 0.98516 0.99562 1.84276 1.13786 1.54832 1.55062 0.90787 0.85984 0.88104 0.87912 0.82991 0.84831 0.84266 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.21 11.51 55.56 0.64 -16.57 16 2 C 0.06 1.53 5.49 -17.32 -0.10 1.44 16 3 Si 0.91 17.79 29.57 -169.99 -5.03 12.76 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.39 -9.96 8.70 -38.02 -0.33 -10.29 16 8 H 0.09 2.30 6.34 -52.49 -0.33 1.97 16 9 C 0.27 7.11 6.71 -82.75 -0.56 6.56 16 10 N -0.49 -12.60 7.92 -9.69 -0.08 -12.68 16 11 C 0.15 3.41 11.12 -17.56 -0.20 3.22 16 12 C -0.33 -6.79 10.05 -39.36 -0.40 -7.19 16 13 C 0.00 -0.01 9.84 -38.90 -0.38 -0.40 16 14 C -0.26 -6.02 5.99 -102.30 -0.61 -6.64 16 15 C 0.19 4.11 5.85 -36.79 -0.22 3.89 16 16 C -0.26 -5.06 10.97 -37.10 -0.41 -5.47 16 17 C -0.08 -1.48 6.38 -105.18 -0.67 -2.15 16 18 C -0.12 -1.91 10.09 -39.15 -0.39 -2.30 16 19 C 0.08 1.12 7.29 -39.44 -0.29 0.84 16 20 F -0.14 -2.06 17.26 2.25 0.04 -2.02 16 21 C -0.15 -2.02 9.99 -39.41 -0.39 -2.42 16 22 C -0.07 -1.06 10.06 -39.48 -0.40 -1.46 16 23 C 0.03 0.50 7.40 -38.39 -0.28 0.22 16 24 O -0.18 -3.87 9.53 2.51 0.02 -3.84 16 25 H 0.28 6.22 8.29 -40.82 -0.34 5.88 16 26 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 27 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 28 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 29 H 0.15 2.61 8.06 -52.49 -0.42 2.19 16 30 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 294.06 15.07 4.43 4.43 Total: -1.00 -27.49 294.06 -8.01 -35.50 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -2.43 Total: 4.55 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -5.62 Total: -22.14 kcal Atomic # 7 Polarization: -29.81 SS G_CDS: 0.56 Total: -29.25 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: 0.02 Total: -3.84 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.49 -8.01 -35.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242708022.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.458 kcal (2) G-P(sol) polarization free energy of solvation -27.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds