Wall clock time and date at job start Tue Mar 31 2020 05:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30727 * 1 3 3 Si 1.86804 * 120.00390 * 2 1 4 4 H 1.48495 * 109.47035 * 274.98808 * 3 2 1 5 5 H 1.48495 * 109.47141 * 34.99213 * 3 2 1 6 6 H 1.48498 * 109.46955 * 154.98947 * 3 2 1 7 7 C 1.40109 * 119.99623 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99895 * 186.09701 * 7 2 1 9 9 C 1.40512 * 120.00068 * 6.10033 * 7 2 1 10 10 N 1.33897 * 120.28662 * 353.38358 * 9 7 2 11 11 C 1.31137 * 121.60374 * 180.29741 * 10 9 7 12 12 C 1.39008 * 122.06952 * 359.72755 * 11 10 9 13 13 C 1.38052 * 120.36743 * 359.97438 * 12 11 10 14 14 C 1.40245 * 118.41940 * 359.97438 * 13 12 11 15 15 C 1.46842 * 120.94723 * 180.02562 * 14 13 12 16 16 C 1.36337 * 125.15865 * 309.97741 * 15 14 13 17 17 C 1.46136 * 106.05049 * 179.97438 * 16 15 14 18 18 C 1.39812 * 134.10198 * 180.32731 * 17 16 15 19 19 C 1.37821 * 119.56359 * 180.13975 * 18 17 16 20 20 F 1.35105 * 119.88365 * 179.79721 * 19 18 17 21 21 C 1.39024 * 120.23099 * 359.51520 * 19 18 17 22 22 C 1.37900 * 120.73530 * 0.23587 * 21 19 18 23 23 C 1.38843 * 120.04971 * 359.97438 * 22 21 19 24 24 O 1.34821 * 125.16209 * 129.97284 * 15 14 13 25 25 H 0.97003 * 119.99102 * 359.97438 * 1 2 3 26 26 H 1.07993 * 118.96913 * 179.71208 * 11 10 9 27 27 H 1.08002 * 119.81226 * 179.97438 * 12 11 10 28 28 H 1.07998 * 120.79423 * 179.97438 * 13 12 11 29 29 H 1.08001 * 126.97029 * 359.95459 * 16 15 14 30 30 H 1.07997 * 120.22081 * 359.93144 * 18 17 16 31 31 H 1.08000 * 119.63641 * 180.25754 * 21 19 18 32 32 H 1.07992 * 119.97918 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3835 2.1072 -1.3947 5 1 1.4957 2.6199 0.8029 6 1 3.5877 1.4119 0.5919 7 6 2.0077 -1.2134 -0.0005 8 1 3.0832 -1.2162 0.0988 9 6 1.3111 -2.4268 -0.1304 10 7 -0.0278 -2.4410 -0.1211 11 6 -0.7039 -3.5589 -0.2346 12 6 -0.0752 -4.7906 -0.3764 13 6 1.3026 -4.8719 -0.4026 14 6 2.0436 -3.6872 -0.2837 15 6 3.5117 -3.7093 -0.3051 16 6 4.2958 -4.5251 0.4554 17 6 5.6767 -4.2013 0.1034 18 6 6.9238 -4.6788 0.5173 19 6 8.0716 -4.1423 -0.0253 20 9 9.2802 -4.5961 0.3730 21 6 7.9898 -3.1400 -0.9852 22 6 6.7654 -2.6645 -1.4051 23 6 5.5958 -3.1868 -0.8695 24 8 4.2888 -2.9260 -1.0799 25 1 -0.4849 0.8401 0.0004 26 1 -1.7831 -3.5216 -0.2172 27 1 -0.6681 -5.6888 -0.4666 28 1 1.7982 -5.8252 -0.5121 29 1 3.9637 -5.2611 1.1727 30 1 6.9875 -5.4605 1.2597 31 1 8.8953 -2.7293 -1.4070 32 1 6.7161 -1.8859 -2.1518 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242708022.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:42 Heat of formation + Delta-G solvation = -3.226026 kcal Electronic energy + Delta-G solvation = -20637.596290 eV Core-core repulsion = 17250.086047 eV Total energy + Delta-G solvation = -3387.510243 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.88347 -43.25364 -39.80857 -38.47754 -35.74238 -34.21761 -32.75931 -32.15245 -30.94777 -29.59812 -27.62125 -24.99988 -23.62448 -23.40792 -22.63169 -21.78848 -19.53100 -18.75942 -18.51737 -17.75555 -17.42347 -17.01414 -16.46253 -16.35359 -16.07395 -15.99881 -15.27941 -14.77047 -14.39931 -14.30588 -14.08405 -13.91695 -13.64267 -13.52932 -13.05313 -12.95038 -12.87518 -12.80720 -12.34160 -11.95541 -11.89456 -11.35998 -11.22571 -10.34917 -9.79264 -9.61587 -9.41750 -8.89175 -8.48902 -6.66212 -0.27048 0.14795 0.54597 1.00890 1.33196 1.47532 1.48400 1.55433 1.94949 2.12705 2.52660 2.69970 3.10259 3.51901 3.70587 3.76738 3.99099 4.16009 4.20318 4.26542 4.35982 4.41743 4.69347 4.70622 4.81555 4.87150 4.96117 5.04588 5.07115 5.20309 5.33773 5.44177 5.52242 5.71282 5.78711 5.99678 6.14532 6.28311 6.49966 6.80108 8.01832 8.22503 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.016527 B = 0.005671 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.739925 B = 4936.518753 C = 6371.434953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.732 5.732 2 C 0.025 3.975 3 Si 0.982 3.018 4 H -0.258 1.258 5 H -0.257 1.257 6 H -0.259 1.259 7 C -0.426 4.426 8 H 0.082 0.918 9 C 0.243 3.757 10 N -0.523 5.523 11 C 0.131 3.869 12 C -0.316 4.316 13 C -0.009 4.009 14 C -0.267 4.267 15 C 0.148 3.852 16 C -0.245 4.245 17 C -0.104 4.104 18 C -0.120 4.120 19 C 0.078 3.922 20 F -0.138 7.138 21 C -0.126 4.126 22 C -0.075 4.075 23 C 0.003 3.997 24 O -0.204 6.204 25 H 0.288 0.712 26 H 0.146 0.854 27 H 0.138 0.862 28 H 0.133 0.867 29 H 0.169 0.831 30 H 0.154 0.846 31 H 0.179 0.821 32 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.458 -3.783 -1.032 11.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.352 5.352 2 C -0.200 4.200 3 Si 0.801 3.199 4 H -0.183 1.183 5 H -0.181 1.181 6 H -0.183 1.183 7 C -0.455 4.455 8 H 0.100 0.900 9 C 0.120 3.880 10 N -0.235 5.235 11 C -0.037 4.037 12 C -0.339 4.339 13 C -0.033 4.033 14 C -0.272 4.272 15 C 0.100 3.900 16 C -0.264 4.264 17 C -0.105 4.105 18 C -0.139 4.139 19 C 0.058 3.942 20 F -0.117 7.117 21 C -0.145 4.145 22 C -0.094 4.094 23 C -0.045 4.045 24 O -0.106 6.106 25 H 0.099 0.901 26 H 0.164 0.836 27 H 0.155 0.845 28 H 0.151 0.849 29 H 0.186 0.814 30 H 0.172 0.828 31 H 0.197 0.803 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 9.801 -2.632 -1.101 10.208 hybrid contribution 0.467 -0.423 0.116 0.641 sum 10.268 -3.056 -0.985 10.758 Atomic orbital electron populations 1.70157 1.08761 1.30107 1.26127 1.27043 0.95824 1.04571 0.92572 0.85195 0.79159 0.75691 0.79890 1.18253 1.18076 1.18299 1.19846 0.95081 0.90656 1.39868 0.89956 1.20062 0.88402 0.91337 0.88237 1.68772 1.07334 1.28004 1.19371 1.23129 1.00300 0.88946 0.91349 1.21446 0.94474 0.98986 1.18974 1.21207 0.94022 0.95593 0.92440 1.19662 0.87072 0.95816 1.24619 1.20494 0.90278 0.88967 0.90251 1.22572 0.89442 1.07504 1.06927 1.19761 0.94001 0.98169 0.98559 1.20558 0.88730 1.02225 1.02357 1.17414 0.79899 0.97979 0.98881 1.91489 1.42098 1.88232 1.89878 1.21123 0.98523 0.97108 0.97723 1.20088 0.86695 1.01231 1.01345 1.20326 0.84031 0.99527 1.00584 1.84190 1.15241 1.55339 1.55792 0.90081 0.83643 0.84465 0.84924 0.81381 0.82814 0.80340 0.82141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -37.88 11.51 21.85 0.25 -37.63 16 2 C 0.02 1.24 5.49 85.31 0.47 1.71 16 3 Si 0.98 37.50 29.57 68.60 2.03 39.53 16 4 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 6 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 7 C -0.43 -23.07 8.70 23.28 0.20 -22.87 16 8 H 0.08 4.42 6.34 -2.91 -0.02 4.40 16 9 C 0.24 13.29 6.71 41.56 0.28 13.57 16 10 N -0.52 -28.26 7.92 -184.58 -1.46 -29.72 16 11 C 0.13 5.95 11.12 84.98 0.94 6.90 16 12 C -0.32 -12.79 10.05 22.41 0.23 -12.57 16 13 C -0.01 -0.36 9.84 22.71 0.22 -0.14 16 14 C -0.27 -12.95 5.99 -18.36 -0.11 -13.06 16 15 C 0.15 6.63 5.85 24.08 0.14 6.77 16 16 C -0.25 -9.40 10.97 23.88 0.26 -9.14 16 17 C -0.10 -3.65 6.38 -20.22 -0.13 -3.78 16 18 C -0.12 -3.43 10.09 22.55 0.23 -3.20 16 19 C 0.08 2.00 7.29 22.36 0.16 2.16 16 20 F -0.14 -3.39 17.26 44.97 0.78 -2.61 16 21 C -0.13 -2.92 9.99 22.38 0.22 -2.69 16 22 C -0.08 -2.09 10.06 22.33 0.22 -1.87 16 23 C 0.00 0.10 7.40 23.04 0.17 0.27 16 24 O -0.20 -9.10 9.53 -13.92 -0.13 -9.24 16 25 H 0.29 13.25 8.29 -92.71 -0.77 12.48 16 26 H 0.15 5.67 8.06 -2.91 -0.02 5.65 16 27 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 28 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 29 H 0.17 5.63 8.06 -2.91 -0.02 5.60 16 30 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 31 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 32 H 0.16 3.64 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -62.87 294.06 6.15 -56.73 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 1.17 Total: 20.86 kcal Atomic # 6 Polarization: -41.44 SS G_CDS: 3.52 Total: -37.93 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: -1.21 Total: -67.35 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -0.13 Total: -9.24 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.78 Total: -2.61 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 2.03 Total: 39.53 kcal Total: -62.87 6.15 -56.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242708022.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.501 kcal (2) G-P(sol) polarization free energy of solvation -62.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds