Wall clock time and date at job start Tue Mar 31 2020 05:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39587 * 120.45484 * 344.85921 * 3 2 1 5 5 C 1.37712 * 120.18706 * 179.74494 * 4 3 2 6 6 C 1.39836 * 121.16880 * 0.23059 * 5 4 3 7 7 C 1.48278 * 119.53966 * 180.02562 * 6 5 4 8 8 C 1.39349 * 120.10993 * 309.72861 * 7 6 5 9 9 C 1.38455 * 119.84004 * 179.76801 * 8 7 6 10 10 O 1.35949 * 119.96402 * 180.25016 * 9 8 7 11 11 C 1.38823 * 120.06611 * 0.52925 * 9 8 7 12 12 C 1.38198 * 120.22794 * 359.69466 * 11 9 8 13 13 C 1.38275 * 120.15776 * 0.05370 * 12 11 9 14 14 F 1.35097 * 120.03745 * 179.97438 * 13 12 11 15 15 C 1.38619 * 120.92233 * 0.04584 * 6 5 4 16 16 C 1.40601 * 119.73800 * 359.97438 * 15 6 5 17 17 C 1.40843 * 120.55336 * 180.02562 * 16 15 6 18 18 H 1.07994 * 119.99796 * 150.13648 * 17 16 15 19 19 C 1.40235 * 119.99943 * 330.12568 * 17 16 15 20 20 N 1.30655 * 119.99564 * 161.89524 * 19 17 16 21 21 Si 1.86800 * 120.00185 * 341.89495 * 19 17 16 22 22 H 1.48500 * 109.47101 * 95.39085 * 21 19 17 23 23 H 1.48495 * 109.47087 * 215.38809 * 21 19 17 24 24 H 1.48507 * 109.47033 * 335.39445 * 21 19 17 25 25 H 1.07995 * 119.90852 * 0.02562 * 4 3 2 26 26 H 1.08002 * 119.41535 * 180.25516 * 5 4 3 27 27 H 1.07998 * 120.08252 * 0.02562 * 8 7 6 28 28 H 0.96702 * 114.00123 * 270.28042 * 10 9 8 29 29 H 1.07998 * 119.88546 * 179.72673 * 11 9 8 30 30 H 1.07998 * 119.92181 * 180.02562 * 12 11 9 31 31 H 1.08002 * 120.13495 * 179.97438 * 15 6 5 32 32 H 0.97002 * 120.00022 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2760 -1.1606 0.3143 5 6 4.6531 -1.1551 0.3075 6 6 5.3707 0.0032 -0.0065 7 6 6.8531 -0.0318 -0.0035 8 6 7.5378 -0.5518 1.0931 9 6 8.9219 -0.5862 1.0881 10 8 9.5924 -1.0977 2.1544 11 6 9.6259 -0.0936 -0.0024 12 6 8.9498 0.4270 -1.0894 13 6 7.5675 0.4612 -1.0964 14 9 6.9090 0.9712 -2.1602 15 6 4.7157 1.1839 -0.3202 16 6 3.3102 1.2218 -0.3245 17 6 2.6270 2.4121 -0.6413 18 1 1.6540 2.3684 -1.1077 19 6 3.2103 3.6538 -0.3508 20 7 2.7732 4.7347 -0.9405 21 14 4.6120 3.7626 0.8792 22 1 5.9086 3.7308 0.1561 23 1 4.5025 5.0309 1.6436 24 1 4.5392 2.6122 1.8156 25 1 2.7424 -2.0670 0.5591 26 1 5.1883 -2.0617 0.5486 27 1 6.9901 -0.9310 1.9432 28 1 9.8038 -0.4451 2.8359 29 1 10.7056 -0.1178 -0.0013 30 1 9.5024 0.8085 -1.9353 31 1 5.2826 2.0712 -0.5604 32 1 3.1764 5.5938 -0.7393 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242762384.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:24 Heat of formation + Delta-G solvation = -23.768914 kcal Electronic energy + Delta-G solvation = -20753.750955 eV Core-core repulsion = 17365.349906 eV Total energy + Delta-G solvation = -3388.401049 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.57452 -39.66333 -38.06723 -36.47425 -35.21181 -34.10293 -32.18151 -30.80009 -29.66471 -28.46457 -25.76860 -23.68058 -22.74778 -21.49745 -20.91814 -18.34507 -17.77661 -17.49754 -17.35329 -16.50712 -15.67637 -15.38591 -15.06354 -14.38281 -14.31766 -13.93002 -13.80919 -13.46689 -13.08444 -13.00327 -12.74202 -12.41898 -12.13498 -11.91768 -11.84277 -11.56986 -11.47011 -11.11772 -11.07694 -10.72936 -10.45962 -10.17609 -9.97256 -9.44324 -9.09815 -8.48888 -8.01242 -7.61223 -7.33505 -4.86329 0.94700 1.13773 1.90144 2.42574 2.89876 2.98600 3.09089 3.42921 3.69192 3.80456 3.87856 4.13634 4.36322 4.40204 4.78485 4.83963 5.09402 5.17167 5.25730 5.34975 5.70558 5.78405 5.83811 6.04857 6.13220 6.25043 6.28486 6.32466 6.49637 6.72415 6.82050 6.90914 7.21793 7.31867 7.46898 7.53710 7.66916 7.93839 8.21266 8.35298 8.69278 9.65625 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.016310 B = 0.006459 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.308681 B = 4333.772416 C = 5171.216104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.296 3.704 3 C -0.165 4.165 4 C -0.016 4.016 5 C -0.235 4.235 6 C 0.001 3.999 7 C -0.047 4.047 8 C -0.106 4.106 9 C 0.089 3.911 10 O -0.497 6.497 11 C -0.126 4.126 12 C -0.141 4.141 13 C 0.100 3.900 14 F -0.126 7.126 15 C -0.204 4.204 16 C 0.125 3.875 17 C -0.411 4.411 18 H 0.099 0.901 19 C 0.084 3.916 20 N -0.772 5.772 21 Si 0.906 3.094 22 H -0.262 1.262 23 H -0.282 1.282 24 H -0.235 1.235 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.141 0.859 28 H 0.389 0.611 29 H 0.134 0.866 30 H 0.138 0.862 31 H 0.111 0.889 32 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.454 -4.528 3.975 16.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.174 5.174 2 C -0.014 4.014 3 C -0.171 4.171 4 C -0.036 4.036 5 C -0.254 4.254 6 C 0.000 4.000 7 C -0.048 4.048 8 C -0.125 4.125 9 C 0.045 3.955 10 O -0.307 6.307 11 C -0.144 4.144 12 C -0.160 4.160 13 C 0.081 3.919 14 F -0.104 7.104 15 C -0.223 4.223 16 C 0.119 3.881 17 C -0.438 4.438 18 H 0.117 0.883 19 C -0.141 4.141 20 N -0.393 5.393 21 Si 0.731 3.269 22 H -0.188 1.188 23 H -0.209 1.209 24 H -0.158 1.158 25 H 0.126 0.874 26 H 0.124 0.876 27 H 0.159 0.841 28 H 0.244 0.756 29 H 0.152 0.848 30 H 0.156 0.844 31 H 0.129 0.871 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.550 -4.732 3.537 14.781 hybrid contribution 0.987 0.862 0.395 1.369 sum 14.537 -3.870 3.932 15.549 Atomic orbital electron populations 1.81044 1.12625 1.09990 1.13770 1.25663 0.92614 0.91544 0.91627 1.16904 0.83452 0.96761 1.19974 1.20491 0.93501 0.95128 0.94523 1.20083 0.93080 0.96921 1.15347 1.18223 0.88576 0.94620 0.98601 1.19079 0.94307 0.98493 0.92919 1.21439 0.93097 0.99215 0.98709 1.18329 0.89794 0.98264 0.89127 1.84847 1.76627 1.38278 1.30939 1.21188 1.00444 0.99155 0.93662 1.20930 0.92119 1.02746 1.00181 1.17824 0.89938 0.98903 0.85245 1.91553 1.81140 1.84267 1.53448 1.21005 0.93825 0.96821 1.10635 1.18350 0.90492 0.91361 0.87890 1.19675 1.04947 0.88635 1.30521 0.88287 1.26368 0.97240 0.95015 0.95463 1.69590 1.36803 1.00729 1.32182 0.86354 0.80006 0.79271 0.81291 1.18789 1.20920 1.15814 0.87414 0.87624 0.84074 0.75599 0.84786 0.84379 0.87109 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.86 18.54 41.84 0.78 -11.09 16 2 C 0.30 6.81 14.35 -22.47 -0.32 6.49 16 3 C -0.17 -3.64 5.95 -104.12 -0.62 -4.26 16 4 C -0.02 -0.29 9.74 -39.27 -0.38 -0.68 16 5 C -0.23 -4.26 9.42 -39.18 -0.37 -4.63 16 6 C 0.00 0.01 5.31 -105.03 -0.56 -0.54 16 7 C -0.05 -0.79 5.45 -104.86 -0.57 -1.36 16 8 C -0.11 -1.49 9.41 -39.09 -0.37 -1.86 16 9 C 0.09 1.09 6.70 -39.28 -0.26 0.82 16 10 O -0.50 -5.08 13.50 -19.58 -0.26 -5.35 16 11 C -0.13 -1.42 9.98 -39.38 -0.39 -1.81 16 12 C -0.14 -1.78 10.01 -39.58 -0.40 -2.18 16 13 C 0.10 1.62 7.13 -39.07 -0.28 1.35 16 14 F -0.13 -2.30 15.84 2.25 0.04 -2.26 16 15 C -0.20 -4.45 5.95 -38.55 -0.23 -4.68 16 16 C 0.12 2.93 5.26 -104.67 -0.55 2.38 16 17 C -0.41 -10.45 9.03 -37.85 -0.34 -10.79 16 18 H 0.10 2.73 7.64 -52.49 -0.40 2.33 16 19 C 0.08 2.03 5.41 -17.30 -0.09 1.93 16 20 N -0.77 -19.07 13.92 55.56 0.77 -18.30 16 21 Si 0.91 18.87 24.53 -169.99 -4.17 14.70 16 22 H -0.26 -5.29 6.72 56.52 0.38 -4.91 16 23 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.24 -4.92 6.86 56.52 0.39 -4.53 16 25 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 26 H 0.11 1.66 8.00 -52.49 -0.42 1.24 16 27 H 0.14 1.84 8.03 -52.49 -0.42 1.42 16 28 H 0.39 2.10 9.06 45.56 0.41 2.51 16 29 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 30 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 31 H 0.11 2.45 4.42 -52.49 -0.23 2.22 16 32 H 0.29 6.47 8.29 -40.82 -0.34 6.13 16 LS Contribution 295.72 15.07 4.46 4.46 Total: -1.00 -27.84 295.72 -5.63 -33.47 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -1.50 Total: 4.19 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -5.74 Total: -19.82 kcal Atomic # 7 Polarization: -30.93 SS G_CDS: 1.55 Total: -29.39 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.26 Total: -5.35 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -4.17 Total: 14.70 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.84 -5.63 -33.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242762384.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.698 kcal (2) G-P(sol) polarization free energy of solvation -27.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds