Wall clock time and date at job start Tue Mar 31 2020 05:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39587 * 120.45484 * 344.85921 * 3 2 1 5 5 C 1.37712 * 120.18706 * 179.74494 * 4 3 2 6 6 C 1.39836 * 121.16880 * 0.23059 * 5 4 3 7 7 C 1.48278 * 119.53966 * 180.02562 * 6 5 4 8 8 C 1.39349 * 120.10993 * 309.72861 * 7 6 5 9 9 C 1.38455 * 119.84004 * 179.76801 * 8 7 6 10 10 O 1.35949 * 119.96402 * 180.25016 * 9 8 7 11 11 C 1.38823 * 120.06611 * 0.52925 * 9 8 7 12 12 C 1.38198 * 120.22794 * 359.69466 * 11 9 8 13 13 C 1.38275 * 120.15776 * 0.05370 * 12 11 9 14 14 F 1.35097 * 120.03745 * 179.97438 * 13 12 11 15 15 C 1.38619 * 120.92233 * 0.04584 * 6 5 4 16 16 C 1.40601 * 119.73800 * 359.97438 * 15 6 5 17 17 C 1.40843 * 120.55336 * 180.02562 * 16 15 6 18 18 H 1.07994 * 119.99796 * 150.13648 * 17 16 15 19 19 C 1.40235 * 119.99943 * 330.12568 * 17 16 15 20 20 N 1.30655 * 119.99564 * 161.89524 * 19 17 16 21 21 Si 1.86800 * 120.00185 * 341.89495 * 19 17 16 22 22 H 1.48500 * 109.47101 * 95.39085 * 21 19 17 23 23 H 1.48495 * 109.47087 * 215.38809 * 21 19 17 24 24 H 1.48507 * 109.47033 * 335.39445 * 21 19 17 25 25 H 1.07995 * 119.90852 * 0.02562 * 4 3 2 26 26 H 1.08002 * 119.41535 * 180.25516 * 5 4 3 27 27 H 1.07998 * 120.08252 * 0.02562 * 8 7 6 28 28 H 0.96702 * 114.00123 * 270.28042 * 10 9 8 29 29 H 1.07998 * 119.88546 * 179.72673 * 11 9 8 30 30 H 1.07998 * 119.92181 * 180.02562 * 12 11 9 31 31 H 1.08002 * 120.13495 * 179.97438 * 15 6 5 32 32 H 0.97002 * 120.00022 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2760 -1.1606 0.3143 5 6 4.6531 -1.1551 0.3075 6 6 5.3707 0.0032 -0.0065 7 6 6.8531 -0.0318 -0.0035 8 6 7.5378 -0.5518 1.0931 9 6 8.9219 -0.5862 1.0881 10 8 9.5924 -1.0977 2.1544 11 6 9.6259 -0.0936 -0.0024 12 6 8.9498 0.4270 -1.0894 13 6 7.5675 0.4612 -1.0964 14 9 6.9090 0.9712 -2.1602 15 6 4.7157 1.1839 -0.3202 16 6 3.3102 1.2218 -0.3245 17 6 2.6270 2.4121 -0.6413 18 1 1.6540 2.3684 -1.1077 19 6 3.2103 3.6538 -0.3508 20 7 2.7732 4.7347 -0.9405 21 14 4.6120 3.7626 0.8792 22 1 5.9086 3.7308 0.1561 23 1 4.5025 5.0309 1.6436 24 1 4.5392 2.6122 1.8156 25 1 2.7424 -2.0670 0.5591 26 1 5.1883 -2.0617 0.5486 27 1 6.9901 -0.9310 1.9432 28 1 9.8038 -0.4451 2.8359 29 1 10.7056 -0.1178 -0.0013 30 1 9.5024 0.8085 -1.9353 31 1 5.2826 2.0712 -0.5604 32 1 3.1764 5.5938 -0.7393 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242762384.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:23 Heat of formation + Delta-G solvation = -40.710545 kcal Electronic energy + Delta-G solvation = -20754.485599 eV Core-core repulsion = 17365.349906 eV Total energy + Delta-G solvation = -3389.135693 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.82589 -40.71693 -39.56903 -37.57155 -36.92514 -35.81443 -33.53507 -32.48025 -30.81801 -29.69279 -27.49896 -25.01774 -23.92053 -22.93361 -22.33147 -19.62919 -19.41753 -18.92740 -18.50022 -17.63769 -17.08377 -16.68832 -16.27488 -15.96465 -15.58739 -15.45943 -15.00950 -14.79998 -14.55890 -14.55135 -14.11105 -13.97057 -13.71986 -13.56101 -13.34378 -13.02179 -12.83480 -12.67256 -12.48282 -12.20880 -11.98189 -11.70980 -11.37753 -11.11780 -10.26105 -9.68843 -9.59545 -9.12518 -9.08190 -6.71628 -0.29350 0.13049 0.43743 0.77633 1.20621 1.33265 1.43512 1.94754 2.00867 2.14842 2.50421 2.54356 3.22363 3.31531 3.41931 3.47213 3.66883 3.86369 4.14147 4.17627 4.34923 4.56044 4.63841 4.77817 4.83171 4.94742 5.09626 5.13817 5.19910 5.25560 5.35755 5.54761 5.66657 5.78091 5.83479 5.97349 6.13401 6.44659 6.54613 6.85736 6.89441 7.94938 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.016310 B = 0.006459 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.308681 B = 4333.772416 C = 5171.216104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C 0.302 3.698 3 C -0.182 4.182 4 C -0.009 4.009 5 C -0.213 4.213 6 C 0.010 3.990 7 C -0.076 4.076 8 C -0.108 4.108 9 C 0.103 3.897 10 O -0.499 6.499 11 C -0.110 4.110 12 C -0.133 4.133 13 C 0.069 3.931 14 F -0.149 7.149 15 C -0.222 4.222 16 C 0.118 3.882 17 C -0.457 4.457 18 H 0.055 0.945 19 C 0.051 3.949 20 N -0.818 5.818 21 Si 0.957 3.043 22 H -0.253 1.253 23 H -0.269 1.269 24 H -0.238 1.238 25 H 0.143 0.857 26 H 0.144 0.856 27 H 0.151 0.849 28 H 0.413 0.587 29 H 0.170 0.830 30 H 0.162 0.838 31 H 0.103 0.897 32 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.600 -6.857 5.789 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.199 5.199 2 C -0.007 4.007 3 C -0.188 4.188 4 C -0.029 4.029 5 C -0.232 4.232 6 C 0.009 3.991 7 C -0.077 4.077 8 C -0.126 4.126 9 C 0.058 3.942 10 O -0.313 6.313 11 C -0.128 4.128 12 C -0.151 4.151 13 C 0.050 3.950 14 F -0.127 7.127 15 C -0.241 4.241 16 C 0.113 3.887 17 C -0.484 4.484 18 H 0.074 0.926 19 C -0.168 4.168 20 N -0.442 5.442 21 Si 0.778 3.222 22 H -0.178 1.178 23 H -0.195 1.195 24 H -0.160 1.160 25 H 0.160 0.840 26 H 0.161 0.839 27 H 0.169 0.831 28 H 0.273 0.727 29 H 0.188 0.812 30 H 0.180 0.820 31 H 0.121 0.879 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 17.700 -7.060 5.365 19.797 hybrid contribution -0.093 1.292 -0.111 1.300 sum 17.607 -5.768 5.254 19.258 Atomic orbital electron populations 1.81020 1.13317 1.10826 1.14779 1.25952 0.92957 0.90839 0.90996 1.17196 0.83011 0.97657 1.20948 1.20883 0.94031 0.95076 0.92909 1.20600 0.92836 0.97710 1.12075 1.18583 0.90775 0.93772 0.96009 1.18987 0.92655 1.01390 0.94672 1.21535 0.94190 0.98937 0.97972 1.18342 0.89172 0.96734 0.89918 1.84798 1.76023 1.39340 1.31123 1.21588 1.02149 0.96843 0.92260 1.21221 0.90630 1.01898 1.01399 1.18228 0.91406 1.00338 0.85016 1.91497 1.81828 1.84885 1.54528 1.20965 0.92895 0.97938 1.12271 1.18490 0.91548 0.91142 0.87506 1.19524 1.04152 0.90612 1.34160 0.92639 1.27031 0.99123 0.94250 0.96430 1.69615 1.38939 1.01462 1.34141 0.85601 0.77744 0.79522 0.79354 1.17799 1.19467 1.16031 0.83959 0.83852 0.83111 0.72723 0.81236 0.82027 0.87888 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -25.65 18.54 19.00 0.35 -25.30 16 2 C 0.30 14.27 14.35 88.33 1.27 15.54 16 3 C -0.18 -8.08 5.95 -19.54 -0.12 -8.20 16 4 C -0.01 -0.30 9.74 22.47 0.22 -0.08 16 5 C -0.21 -7.02 9.42 22.53 0.21 -6.81 16 6 C 0.01 0.35 5.31 -20.13 -0.11 0.25 16 7 C -0.08 -2.35 5.45 -20.02 -0.11 -2.46 16 8 C -0.11 -2.59 9.41 22.59 0.21 -2.38 16 9 C 0.10 1.98 6.70 22.46 0.15 2.13 16 10 O -0.50 -7.41 13.50 -92.97 -1.26 -8.66 16 11 C -0.11 -1.89 9.98 22.40 0.22 -1.67 16 12 C -0.13 -2.86 10.01 22.27 0.22 -2.64 16 13 C 0.07 2.10 7.13 22.60 0.16 2.26 16 14 F -0.15 -5.40 15.84 44.97 0.71 -4.69 16 15 C -0.22 -9.72 5.95 22.94 0.14 -9.58 16 16 C 0.12 5.75 5.26 -19.90 -0.10 5.65 16 17 C -0.46 -24.91 9.03 23.39 0.21 -24.70 16 18 H 0.06 3.38 7.64 -2.91 -0.02 3.36 16 19 C 0.05 2.63 5.41 85.35 0.46 3.09 16 20 N -0.82 -43.06 13.92 21.87 0.30 -42.75 16 21 Si 0.96 39.66 24.53 68.60 1.68 41.35 16 22 H -0.25 -9.96 6.72 99.48 0.67 -9.29 16 23 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 24 H -0.24 -9.75 6.86 99.48 0.68 -9.06 16 25 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 26 H 0.14 3.72 8.00 -2.91 -0.02 3.70 16 27 H 0.15 3.24 8.03 -2.91 -0.02 3.21 16 28 H 0.41 2.11 9.06 -74.06 -0.67 1.44 16 29 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 30 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 31 H 0.10 4.64 4.42 -2.91 -0.01 4.63 16 32 H 0.30 14.07 8.29 -92.71 -0.77 13.30 16 Total: -1.00 -64.91 295.72 5.30 -59.61 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.47 Total: 10.03 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: 3.04 Total: -29.58 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: 0.66 Total: -68.05 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -1.26 Total: -8.66 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.71 Total: -4.69 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 1.68 Total: 41.35 kcal Total: -64.91 5.30 -59.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242762384.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.898 kcal (2) G-P(sol) polarization free energy of solvation -64.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds