Wall clock time and date at job start Tue Mar 31 2020 05:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39077 * 120.56533 * 245.05924 * 3 2 1 5 5 C 1.39400 * 119.80212 * 180.23513 * 4 3 2 6 6 C 1.47982 * 119.49938 * 179.75825 * 5 4 3 7 7 C 1.39646 * 120.09293 * 0.02562 * 6 5 4 8 8 C 1.37921 * 119.97905 * 179.97438 * 7 6 5 9 9 C 1.38525 * 120.17515 * 359.97438 * 8 7 6 10 10 F 1.35104 * 119.90196 * 180.02562 * 9 8 7 11 11 C 1.39097 * 120.18905 * 359.97438 * 9 8 7 12 12 O 1.35959 * 119.99175 * 180.02562 * 11 9 8 13 13 C 1.38330 * 120.01516 * 359.78061 * 11 9 8 14 14 C 1.39993 * 120.99867 * 359.77852 * 5 4 3 15 15 C 1.35999 * 121.19484 * 359.95651 * 14 5 4 16 16 C 1.41049 * 120.10609 * 0.02562 * 15 14 5 17 17 C 1.40435 * 120.48551 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99640 * 154.63485 * 17 16 15 19 19 C 1.40281 * 120.00029 * 334.64485 * 17 16 15 20 20 N 1.30644 * 120.00499 * 334.60733 * 19 17 16 21 21 Si 1.86808 * 119.99926 * 154.61041 * 19 17 16 22 22 H 1.48496 * 109.47075 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.46942 * 299.99729 * 21 19 17 24 24 H 1.48499 * 109.47070 * 59.99618 * 21 19 17 25 25 H 1.07995 * 120.09989 * 359.97173 * 4 3 2 26 26 H 1.07998 * 120.00645 * 359.95574 * 7 6 5 27 27 H 1.08004 * 119.91269 * 179.97438 * 8 7 6 28 28 H 0.96700 * 113.99671 * 89.99406 * 12 11 9 29 29 H 1.08007 * 120.08940 * 180.23214 * 13 11 9 30 30 H 1.08001 * 119.40705 * 179.97438 * 14 5 4 31 31 H 1.07995 * 119.94480 * 179.97438 * 15 14 5 32 32 H 0.96998 * 119.99310 * 354.18384 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2750 0.5059 1.0858 5 6 4.6689 0.5032 1.0669 6 6 5.4144 1.0474 2.2236 7 6 4.7234 1.5585 3.3243 8 6 5.4206 2.0647 4.4013 9 6 6.8059 2.0672 4.3950 10 9 7.4832 2.5639 5.4532 11 6 7.5013 1.5590 3.3029 12 8 8.8609 1.5630 3.3012 13 6 6.8100 1.0448 2.2207 14 6 5.3740 -0.0061 -0.0299 15 6 4.7239 -0.5149 -1.1107 16 6 3.3139 -0.5365 -1.1427 17 6 2.6344 -1.0595 -2.2548 18 1 1.6352 -1.4533 -2.1410 19 6 3.2536 -1.0707 -3.5136 20 7 4.1898 -0.2020 -3.7889 21 14 2.7395 -2.3277 -4.7963 22 1 3.5388 -2.1293 -6.0319 23 1 2.9730 -3.6963 -4.2695 24 1 1.2975 -2.1562 -5.1072 25 1 2.7457 0.9031 1.9393 26 1 3.6435 1.5577 3.3320 27 1 4.8851 2.4601 5.2518 28 1 9.2570 0.7640 3.6750 29 1 7.3488 0.6464 1.3736 30 1 6.4539 0.0049 -0.0176 31 1 5.2881 -0.9023 -1.9461 32 1 4.3983 0.5031 -3.1562 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243048166.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:01 Heat of formation + Delta-G solvation = -34.323618 kcal Electronic energy + Delta-G solvation = -20096.003907 eV Core-core repulsion = 16707.145172 eV Total energy + Delta-G solvation = -3388.858735 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.64021 -39.49552 -38.11683 -36.63189 -35.36875 -34.53101 -31.46911 -30.53841 -29.70952 -28.47744 -25.61365 -23.49919 -22.61238 -21.84536 -20.74150 -18.72977 -18.36949 -17.35198 -16.89936 -16.33484 -15.58348 -15.36374 -14.79413 -14.64805 -14.27665 -13.89189 -13.69690 -13.51109 -13.14122 -13.01393 -12.55426 -12.35005 -12.22358 -12.06227 -11.75235 -11.63140 -11.41591 -11.05352 -10.96762 -10.67909 -10.53901 -10.08760 -10.00960 -9.56901 -8.91552 -8.68033 -8.18048 -7.84092 -7.47770 -5.00896 1.08336 1.33721 1.95758 2.43358 2.90643 2.97092 3.11277 3.60730 3.62709 3.68093 4.04155 4.15530 4.22734 4.51465 4.88473 5.05992 5.10874 5.27500 5.34968 5.45613 5.65168 5.81299 5.93872 6.23871 6.26946 6.35527 6.39180 6.46195 6.65039 6.80543 6.87937 7.08980 7.20205 7.26212 7.41398 7.54361 7.64519 7.66985 8.07412 8.18390 8.58083 9.40039 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.024607 B = 0.004067 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.597670 B = 6882.328381 C = 7911.992987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C 0.296 3.704 3 C -0.186 4.186 4 C 0.015 3.985 5 C -0.222 4.222 6 C 0.032 3.968 7 C -0.129 4.129 8 C -0.124 4.124 9 C 0.027 3.973 10 F -0.145 7.145 11 C 0.085 3.915 12 O -0.493 6.493 13 C -0.145 4.145 14 C -0.035 4.035 15 C -0.216 4.216 16 C 0.127 3.873 17 C -0.452 4.452 18 H 0.089 0.911 19 C 0.034 3.966 20 N -0.747 5.747 21 Si 1.067 2.933 22 H -0.267 1.267 23 H -0.267 1.267 24 H -0.269 1.269 25 H 0.107 0.893 26 H 0.133 0.867 27 H 0.132 0.868 28 H 0.387 0.613 29 H 0.137 0.863 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.336 -0.485 6.642 9.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.178 5.178 2 C -0.014 4.014 3 C -0.192 4.192 4 C -0.006 4.006 5 C -0.223 4.223 6 C 0.032 3.968 7 C -0.147 4.147 8 C -0.143 4.143 9 C 0.007 3.993 10 F -0.124 7.124 11 C 0.040 3.960 12 O -0.302 6.302 13 C -0.163 4.163 14 C -0.054 4.054 15 C -0.235 4.235 16 C 0.121 3.879 17 C -0.477 4.477 18 H 0.107 0.893 19 C -0.194 4.194 20 N -0.367 5.367 21 Si 0.888 3.112 22 H -0.191 1.191 23 H -0.192 1.192 24 H -0.194 1.194 25 H 0.125 0.875 26 H 0.150 0.850 27 H 0.150 0.850 28 H 0.243 0.757 29 H 0.155 0.845 30 H 0.120 0.880 31 H 0.134 0.866 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.927 -0.397 4.875 6.943 hybrid contribution 0.402 0.291 2.038 2.098 sum 5.329 -0.106 6.913 8.729 Atomic orbital electron populations 1.81052 1.12583 1.13611 1.10561 1.25686 0.92617 0.91534 0.91565 1.16672 0.83362 1.18295 1.00850 1.20677 0.92773 0.92602 0.94591 1.17613 0.91766 1.16728 0.96182 1.18810 0.91719 0.93195 0.93078 1.21100 1.00293 1.00397 0.92899 1.20900 0.91543 1.01754 1.00134 1.18023 0.90294 1.05549 0.85438 1.91431 1.80365 1.85794 1.54794 1.18304 0.83041 1.01335 0.93324 1.84856 1.15548 1.44820 1.84980 1.21349 0.93896 1.02438 0.98649 1.20457 0.98010 0.94491 0.92403 1.20784 0.93542 1.09143 0.99991 1.18521 0.91481 0.87281 0.90656 1.21017 1.03389 1.29262 0.93991 0.89254 1.27486 0.92194 0.99414 1.00273 1.70414 1.19687 1.08035 1.38534 0.83583 0.77635 0.74998 0.75016 1.19067 1.19169 1.19426 0.87522 0.84973 0.85031 0.75728 0.84516 0.88027 0.86598 0.87638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.41 18.54 41.84 0.78 -10.63 16 2 C 0.30 6.52 14.30 -22.47 -0.32 6.20 16 3 C -0.19 -3.95 5.93 -104.27 -0.62 -4.57 16 4 C 0.01 0.27 9.12 -38.84 -0.35 -0.08 16 5 C -0.22 -4.01 5.88 -104.81 -0.62 -4.62 16 6 C 0.03 0.52 5.88 -104.88 -0.62 -0.10 16 7 C -0.13 -1.86 9.41 -39.17 -0.37 -2.23 16 8 C -0.12 -1.69 10.00 -39.59 -0.40 -2.09 16 9 C 0.03 0.39 7.32 -39.16 -0.29 0.11 16 10 F -0.14 -2.18 17.10 2.25 0.04 -2.14 16 11 C 0.09 1.25 6.70 -39.23 -0.26 0.99 16 12 O -0.49 -6.48 13.36 -19.61 -0.26 -6.74 16 13 C -0.14 -2.18 9.35 -39.05 -0.37 -2.55 16 14 C -0.03 -0.64 9.30 -39.73 -0.37 -1.01 16 15 C -0.22 -4.43 7.88 -39.32 -0.31 -4.74 16 16 C 0.13 2.80 5.46 -104.61 -0.57 2.23 16 17 C -0.45 -10.19 8.48 -37.99 -0.32 -10.52 16 18 H 0.09 2.06 7.45 -52.48 -0.39 1.67 16 19 C 0.03 0.72 4.95 -17.29 -0.09 0.64 16 20 N -0.75 -16.48 12.30 55.57 0.68 -15.80 16 21 Si 1.07 18.25 30.01 -169.99 -5.10 13.15 16 22 H -0.27 -4.51 7.11 56.52 0.40 -4.11 16 23 H -0.27 -4.39 7.11 56.52 0.40 -3.99 16 24 H -0.27 -4.52 7.11 56.52 0.40 -4.12 16 25 H 0.11 1.74 6.13 -52.49 -0.32 1.42 16 26 H 0.13 1.72 6.14 -52.49 -0.32 1.40 16 27 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 28 H 0.39 3.14 9.06 45.56 0.41 3.55 16 29 H 0.14 1.92 6.13 -52.48 -0.32 1.60 16 30 H 0.10 1.64 6.09 -52.49 -0.32 1.32 16 31 H 0.12 2.41 6.48 -52.49 -0.34 2.07 16 32 H 0.31 6.92 6.68 -40.82 -0.27 6.65 16 LS Contribution 294.81 15.07 4.44 4.44 Total: -1.00 -25.17 294.81 -6.38 -31.55 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -1.09 Total: 8.51 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -5.87 Total: -22.33 kcal Atomic # 7 Polarization: -27.89 SS G_CDS: 1.46 Total: -26.43 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.26 Total: -6.74 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.10 Total: 13.15 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -25.17 -6.38 -31.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243048166.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.774 kcal (2) G-P(sol) polarization free energy of solvation -25.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds