Wall clock time and date at job start Tue Mar 31 2020 05:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86794 * 120.00173 * 2 1 4 4 H 1.48496 * 109.47382 * 270.00021 * 3 2 1 5 5 H 1.48501 * 109.47297 * 30.00174 * 3 2 1 6 6 H 1.48504 * 109.47111 * 150.00101 * 3 2 1 7 7 C 1.38641 * 119.99530 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00501 * 0.02562 * 7 2 1 9 9 O 1.34817 * 119.99943 * 180.02562 * 7 2 1 10 10 C 1.35670 * 116.99718 * 185.07791 * 9 7 2 11 11 C 1.38746 * 120.14045 * 354.40070 * 10 9 7 12 12 C 1.38122 * 120.04848 * 180.27663 * 11 10 9 13 13 C 1.38441 * 120.33297 * 359.74418 * 12 11 10 14 14 C 1.38006 * 120.27826 * 0.02562 * 13 12 11 15 15 C 1.39321 * 119.93579 * 359.97438 * 14 13 12 16 16 C 1.48217 * 120.15954 * 179.97438 * 15 14 13 17 17 C 1.39141 * 120.70988 * 65.02763 * 16 15 14 18 18 N 1.32066 * 120.99126 * 180.02562 * 17 16 15 19 19 C 1.31632 * 122.56256 * 359.97438 * 18 17 16 20 20 C 1.39740 * 120.58504 * 359.97438 * 19 18 17 21 21 N 1.35566 * 134.13282 * 180.02562 * 20 19 18 22 22 N 1.23647 * 110.54333 * 179.97438 * 21 20 19 23 23 O 1.41837 * 109.88999 * 359.97438 * 22 21 20 24 24 C 1.34552 * 106.46709 * 0.02562 * 23 22 21 25 25 H 0.96999 * 119.99655 * 0.02562 * 1 2 3 26 26 H 1.07994 * 119.97214 * 359.97438 * 11 10 9 27 27 H 1.08002 * 119.82834 * 179.76173 * 12 11 10 28 28 H 1.08004 * 119.86269 * 180.02562 * 13 12 11 29 29 H 1.07996 * 120.03199 * 180.02562 * 14 13 12 30 30 H 1.07999 * 119.50214 * 359.97438 * 17 16 15 31 31 H 1.07994 * 119.70683 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0087 -1.2007 -0.0005 8 1 1.4687 -2.1360 -0.0014 9 8 3.3569 -1.2008 0.0000 10 6 3.9727 -2.4049 -0.1076 11 6 3.2249 -3.5735 -0.0950 12 6 3.8543 -4.7986 -0.1989 13 6 5.2315 -4.8689 -0.3213 14 6 5.9882 -3.7150 -0.3401 15 6 5.3651 -2.4732 -0.2361 16 6 6.1731 -1.2307 -0.2552 17 6 6.8887 -0.8659 -1.3913 18 7 7.6108 0.2397 -1.4143 19 6 7.6965 1.0515 -0.3817 20 6 7.0120 0.7692 0.8034 21 7 6.9045 1.3919 2.0028 22 7 6.1685 0.7496 2.7608 23 8 5.6961 -0.4147 2.1027 24 6 6.2309 -0.3985 0.8681 25 1 -0.4849 0.8401 -0.0004 26 1 2.1503 -3.5253 0.0011 27 1 3.2690 -5.7061 -0.1848 28 1 5.7157 -5.8309 -0.4024 29 1 7.0622 -3.7744 -0.4362 30 1 6.8538 -1.4967 -2.2673 31 1 8.3012 1.9436 -0.4510 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587604.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:08 Heat of formation + Delta-G solvation = 103.713890 kcal Electronic energy + Delta-G solvation = -21591.501099 eV Core-core repulsion = 18228.548080 eV Total energy + Delta-G solvation = -3362.953018 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.074 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.08514 -39.75611 -38.90139 -36.76580 -35.81792 -32.98023 -32.49151 -31.43295 -29.60371 -28.84427 -25.48334 -25.24318 -23.94503 -23.23500 -21.61271 -21.05289 -18.95970 -18.08822 -17.99187 -17.30197 -16.79909 -16.39345 -15.37679 -14.98808 -14.40573 -14.23654 -13.99590 -13.91671 -13.56225 -13.49431 -13.19426 -12.78729 -12.55554 -12.40655 -12.38124 -11.87791 -11.59938 -11.15516 -11.01410 -10.95626 -10.43500 -10.02709 -9.72571 -9.59330 -9.17391 -9.03133 -8.31960 -7.56970 -6.58884 -4.24824 -0.00433 0.95899 1.66327 1.90624 2.06705 2.18974 3.09228 3.12963 3.24324 3.45834 3.80052 3.95621 4.07670 4.17084 4.27164 4.42486 4.59465 4.82582 4.91343 5.05421 5.33726 5.38092 5.55492 5.58781 5.68020 5.85419 6.01042 6.17889 6.30135 6.48036 6.82596 6.93675 7.08117 7.38226 7.52323 7.59747 7.68834 7.84523 8.75652 9.34164 10.48200 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.011836 B = 0.010043 C = 0.006546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.081671 B = 2787.295817 C = 4276.433508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.390 4.390 8 H 0.111 0.889 9 O -0.205 6.205 10 C 0.180 3.820 11 C -0.218 4.218 12 C -0.061 4.061 13 C -0.207 4.207 14 C -0.051 4.051 15 C -0.152 4.152 16 C -0.043 4.043 17 C 0.151 3.849 18 N -0.482 5.482 19 C 0.206 3.794 20 C -0.122 4.122 21 N -0.146 5.146 22 N -0.001 5.001 23 O -0.106 6.106 24 C 0.125 3.875 25 H 0.282 0.718 26 H 0.138 0.862 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.182 0.818 31 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.180 -2.951 -1.841 13.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.134 4.134 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.465 4.465 8 H 0.128 0.872 9 O -0.108 6.108 10 C 0.126 3.874 11 C -0.237 4.237 12 C -0.079 4.079 13 C -0.226 4.226 14 C -0.069 4.069 15 C -0.155 4.155 16 C -0.048 4.048 17 C 0.000 4.000 18 N -0.193 5.193 19 C 0.036 3.964 20 C -0.237 4.237 21 N -0.048 5.048 22 N 0.072 4.928 23 O -0.095 6.095 24 C 0.058 3.942 25 H 0.092 0.908 26 H 0.156 0.844 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.136 0.864 30 H 0.199 0.801 31 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 13.283 -1.854 -1.370 13.482 hybrid contribution -0.605 -0.009 0.232 0.648 sum 12.678 -1.862 -1.138 12.865 Atomic orbital electron populations 1.69625 1.05444 1.28744 1.46742 1.24404 0.94965 0.98605 0.95380 0.86264 0.80200 0.81962 0.78993 1.19611 1.20247 1.19261 1.20781 0.76506 0.96794 1.52428 0.87199 1.83547 1.22977 1.25644 1.78679 1.19028 0.90339 0.85870 0.92126 1.21251 1.01335 0.91570 1.09547 1.20950 0.94403 0.96815 0.95763 1.20594 0.93952 0.97333 1.10676 1.20672 0.98549 0.90525 0.97127 1.17405 0.89737 0.91062 1.17256 1.18678 1.00481 0.95853 0.89753 1.23176 0.89092 0.91963 0.95732 1.67779 1.19414 1.04638 1.27425 1.22477 0.92505 0.97432 0.83944 1.22169 1.09302 0.95928 0.96320 1.72459 1.08528 1.22858 1.00975 1.82838 1.05206 0.89698 1.15037 1.89578 1.59264 1.39770 1.20853 1.21066 0.90736 0.94909 0.87447 0.90754 0.84450 0.86767 0.86831 0.86444 0.80117 0.80471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.61 13.96 55.48 0.77 -23.83 16 2 C 0.07 1.97 5.49 -17.52 -0.10 1.88 16 3 Si 0.90 22.12 28.62 -169.99 -4.86 17.26 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.39 -10.64 9.95 30.88 0.31 -10.34 16 8 H 0.11 3.03 5.44 -52.49 -0.29 2.74 16 9 O -0.21 -5.21 7.81 0.33 0.00 -5.21 16 10 C 0.18 3.94 6.63 -38.73 -0.26 3.68 16 11 C -0.22 -4.38 9.16 -39.44 -0.36 -4.74 16 12 C -0.06 -1.00 10.03 -39.55 -0.40 -1.39 16 13 C -0.21 -3.06 10.03 -39.59 -0.40 -3.46 16 14 C -0.05 -0.77 9.74 -39.26 -0.38 -1.15 16 15 C -0.15 -2.81 5.37 -104.73 -0.56 -3.37 16 16 C -0.04 -0.76 4.95 -104.83 -0.52 -1.27 16 17 C 0.15 2.17 10.90 -17.12 -0.19 1.99 16 18 N -0.48 -6.75 10.30 -12.64 -0.13 -6.88 16 19 C 0.21 2.77 11.26 -17.08 -0.19 2.58 16 20 C -0.12 -2.05 7.32 -84.75 -0.62 -2.67 16 21 N -0.15 -2.54 12.21 32.14 0.39 -2.15 16 22 N 0.00 -0.02 13.89 60.35 0.84 0.82 16 23 O -0.11 -2.22 12.25 8.20 0.10 -2.12 16 24 C 0.12 2.38 7.07 -38.05 -0.27 2.11 16 25 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.14 2.90 5.64 -52.49 -0.30 2.61 16 27 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 29 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.18 2.05 8.06 -52.49 -0.42 1.63 16 31 H 0.18 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 287.94 15.07 4.34 4.34 Total: -1.00 -29.97 287.94 -4.31 -34.28 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -1.83 Total: -0.36 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -3.93 Total: -16.16 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 1.88 Total: -32.04 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: 0.10 Total: -7.32 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.86 Total: 17.26 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.97 -4.31 -34.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587604.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.997 kcal (2) G-P(sol) polarization free energy of solvation -29.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds