Wall clock time and date at job start Tue Mar 31 2020 05:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86801 * 119.99831 * 2 1 4 4 H 1.48497 * 109.47662 * 240.00337 * 3 2 1 5 5 H 1.48507 * 109.47265 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47061 * 120.00318 * 3 2 1 7 7 C 1.39922 * 120.00424 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99993 * 162.63096 * 7 2 1 9 9 C 1.41447 * 119.99528 * 342.35152 * 7 2 1 10 10 C 1.40843 * 120.59188 * 156.71674 * 9 7 2 11 11 N 1.31512 * 120.72146 * 179.97438 * 10 9 7 12 12 C 1.31897 * 122.15155 * 359.97438 * 11 10 9 13 13 C 1.39909 * 121.11101 * 359.97438 * 12 11 10 14 14 C 1.47837 * 120.43412 * 180.02562 * 13 12 11 15 15 C 1.35410 * 125.07833 * 359.72520 * 14 13 12 16 16 C 1.46469 * 106.09012 * 179.86105 * 15 14 13 17 17 C 1.40602 * 105.68721 * 0.38729 * 16 15 14 18 18 C 1.38891 * 119.30077 * 179.76343 * 17 16 15 19 19 C 1.37889 * 120.04328 * 359.97438 * 18 17 16 20 20 C 1.38701 * 120.74442 * 0.02562 * 19 18 17 21 21 C 1.37967 * 120.24709 * 359.97438 * 20 19 18 22 22 F 1.35097 * 120.23062 * 180.02562 * 21 20 19 23 23 O 1.34772 * 125.08393 * 180.02562 * 14 13 12 24 24 C 1.39423 * 119.13530 * 359.75119 * 13 12 11 25 25 H 0.96999 * 120.00494 * 359.97438 * 1 2 3 26 26 H 1.08007 * 119.63856 * 359.97438 * 10 9 7 27 27 H 1.07993 * 119.44213 * 180.02562 * 12 11 10 28 28 H 1.08000 * 126.95408 * 359.97438 * 15 14 13 29 29 H 1.08004 * 119.97375 * 180.02562 * 18 17 16 30 30 H 1.08003 * 119.62889 * 180.02562 * 19 18 17 31 31 H 1.08004 * 119.88086 * 180.02562 * 20 19 18 32 32 H 1.07998 * 120.96866 * 180.27790 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6966 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2117 -0.0005 8 1 3.0511 -1.2328 -0.2798 9 6 1.3507 -2.4080 0.3703 10 6 1.8336 -3.6565 -0.0675 11 7 1.2247 -4.7704 0.2762 12 6 0.1475 -4.7755 1.0373 13 6 -0.4025 -3.5828 1.5195 14 6 -1.6101 -3.6060 2.3720 15 6 -2.2754 -4.7236 2.7489 16 6 -3.3920 -4.2701 3.5812 17 6 -3.2926 -2.8681 3.6197 18 6 -4.2306 -2.1397 4.3399 19 6 -5.2463 -2.7911 5.0073 20 6 -5.3461 -4.1741 4.9706 21 6 -4.4259 -4.9187 4.2618 22 9 -4.5237 -6.2656 4.2258 23 8 -2.2168 -2.5176 2.8856 24 6 0.2064 -2.3726 1.1904 25 1 -0.4851 0.8400 0.0004 26 1 2.7135 -3.6997 -0.6923 27 1 -0.3173 -5.7161 1.2931 28 1 -2.0309 -5.7431 2.4897 29 1 -4.1649 -1.0623 4.3764 30 1 -5.9723 -2.2181 5.5649 31 1 -6.1475 -4.6699 5.4981 32 1 -0.1905 -1.4348 1.5502 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244925019.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:19 Heat of formation + Delta-G solvation = 1.420683 kcal Electronic energy + Delta-G solvation = -20444.320933 eV Core-core repulsion = 17057.012187 eV Total energy + Delta-G solvation = -3387.308746 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.82426 -42.15479 -38.48677 -37.52594 -34.30263 -32.88607 -31.44876 -30.51079 -30.02700 -27.98318 -25.80373 -23.49518 -22.93726 -21.91270 -21.21981 -20.48153 -17.87576 -17.64443 -16.70920 -16.14890 -16.10025 -15.69259 -15.45193 -15.23380 -15.16250 -14.67603 -14.41776 -13.49417 -13.04429 -12.92235 -12.61979 -12.55647 -11.88287 -11.83312 -11.69226 -11.63740 -11.47555 -11.43102 -11.12777 -10.71940 -10.12124 -10.08522 -9.52902 -9.05873 -8.44689 -8.36462 -8.04526 -7.32071 -7.01006 -4.67116 0.76197 1.25304 1.93232 2.62389 2.88936 2.94131 2.95919 3.05536 3.22045 3.57814 3.73662 4.18027 4.42275 4.51719 4.77703 4.93415 5.12595 5.30183 5.42688 5.47311 5.71865 5.85398 5.91171 6.08966 6.16644 6.23136 6.27223 6.44795 6.53814 6.58725 6.78443 6.89539 6.93331 7.28082 7.50458 7.64162 7.68144 8.18572 8.46346 8.48606 9.37492 9.89164 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.021130 B = 0.004654 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.836160 B = 6015.046989 C = 7261.368261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.445 4.445 8 H 0.088 0.912 9 C 0.059 3.941 10 C -0.009 4.009 11 N -0.463 5.463 12 C -0.008 4.008 13 C -0.081 4.081 14 C 0.136 3.864 15 C -0.221 4.221 16 C -0.152 4.152 17 C 0.074 3.926 18 C -0.112 4.112 19 C -0.082 4.082 20 C -0.174 4.174 21 C 0.136 3.864 22 F -0.136 7.136 23 O -0.178 6.178 24 C -0.102 4.102 25 H 0.288 0.712 26 H 0.132 0.868 27 H 0.128 0.872 28 H 0.161 0.839 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.340 -0.828 7.833 11.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.147 4.147 3 Si 0.739 3.261 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.474 4.474 8 H 0.106 0.894 9 C 0.055 3.945 10 C -0.170 4.170 11 N -0.169 5.169 12 C -0.166 4.166 13 C -0.083 4.083 14 C 0.088 3.912 15 C -0.240 4.240 16 C -0.154 4.154 17 C 0.026 3.974 18 C -0.131 4.131 19 C -0.100 4.100 20 C -0.193 4.193 21 C 0.117 3.883 22 F -0.115 7.115 23 O -0.078 6.078 24 C -0.127 4.127 25 H 0.099 0.901 26 H 0.150 0.850 27 H 0.145 0.855 28 H 0.179 0.821 29 H 0.155 0.845 30 H 0.159 0.841 31 H 0.156 0.844 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.141 -1.234 7.473 11.119 hybrid contribution -0.181 1.248 0.253 1.286 sum -8.321 0.015 7.726 11.355 Atomic orbital electron populations 1.69756 1.07788 1.30262 1.32920 1.26031 0.94835 1.01901 0.91926 0.86227 0.80112 0.79440 0.80304 1.18618 1.20077 1.18520 1.19579 0.98288 0.90685 1.38814 0.89416 1.18463 0.92011 0.93966 0.90101 1.22655 1.02340 0.87847 1.04132 1.67024 1.07488 1.31768 1.10670 1.21651 0.96692 0.94551 1.03703 1.18709 0.92703 0.96742 1.00195 1.20818 0.93371 0.82781 0.94254 1.22222 0.96904 0.99551 1.05351 1.19877 0.98347 0.94022 1.03164 1.19451 0.89783 0.92038 0.96146 1.19977 0.93720 1.00322 0.99053 1.20625 0.97365 0.93198 0.98776 1.20910 1.00553 0.94532 1.03288 1.17021 0.95486 0.76701 0.99123 1.91476 1.95734 1.29356 1.94891 1.84142 1.34730 1.34538 1.54428 1.21953 0.97338 0.96031 0.97395 0.90108 0.85005 0.85477 0.82144 0.84532 0.84096 0.84442 0.84544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.09 10.93 55.55 0.61 -18.49 16 2 C 0.07 1.71 5.17 -17.35 -0.09 1.62 16 3 Si 0.92 17.35 29.59 -169.99 -5.03 12.32 16 4 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 5 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 6 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.44 -10.90 9.08 -37.73 -0.34 -11.24 16 8 H 0.09 2.01 7.90 -52.49 -0.41 1.60 16 9 C 0.06 1.49 5.59 -106.71 -0.60 0.89 16 10 C -0.01 -0.21 10.96 -16.70 -0.18 -0.39 16 11 N -0.46 -10.99 10.32 -12.22 -0.13 -11.11 16 12 C -0.01 -0.17 10.71 -16.90 -0.18 -0.35 16 13 C -0.08 -1.86 5.88 -104.90 -0.62 -2.48 16 14 C 0.14 2.84 6.98 -36.66 -0.26 2.59 16 15 C -0.22 -4.09 10.46 -37.28 -0.39 -4.48 16 16 C -0.15 -2.64 6.37 -105.13 -0.67 -3.31 16 17 C 0.07 1.29 7.40 -38.45 -0.28 1.00 16 18 C -0.11 -1.49 10.06 -39.47 -0.40 -1.89 16 19 C -0.08 -0.88 10.01 -39.54 -0.40 -1.28 16 20 C -0.17 -2.05 10.01 -39.51 -0.40 -2.45 16 21 C 0.14 2.04 7.34 -39.12 -0.29 1.75 16 22 F -0.14 -2.05 17.28 2.25 0.04 -2.01 16 23 O -0.18 -3.64 10.33 2.81 0.03 -3.61 16 24 C -0.10 -2.56 8.47 -38.16 -0.32 -2.88 16 25 H 0.29 6.39 8.30 -40.82 -0.34 6.05 16 26 H 0.13 2.87 8.06 -52.48 -0.42 2.45 16 27 H 0.13 2.49 6.90 -52.49 -0.36 2.13 16 28 H 0.16 2.65 7.19 -52.49 -0.38 2.28 16 29 H 0.14 1.53 8.06 -52.48 -0.42 1.10 16 30 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 31 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.14 3.53 6.08 -52.49 -0.32 3.21 16 LS Contribution 292.88 15.07 4.41 4.41 Total: -1.00 -27.14 292.88 -7.78 -34.92 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -2.30 Total: 6.48 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -5.41 Total: -22.91 kcal Atomic # 7 Polarization: -30.08 SS G_CDS: 0.48 Total: -29.60 kcal Atomic # 8 Polarization: -3.64 SS G_CDS: 0.03 Total: -3.61 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.14 -7.78 -34.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244925019.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.337 kcal (2) G-P(sol) polarization free energy of solvation -27.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds