Wall clock time and date at job start Tue Mar 31 2020 05:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86801 * 119.99831 * 2 1 4 4 H 1.48497 * 109.47662 * 240.00337 * 3 2 1 5 5 H 1.48507 * 109.47265 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47061 * 120.00318 * 3 2 1 7 7 C 1.39922 * 120.00424 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99993 * 162.63096 * 7 2 1 9 9 C 1.41447 * 119.99528 * 342.35152 * 7 2 1 10 10 C 1.40843 * 120.59188 * 156.71674 * 9 7 2 11 11 N 1.31512 * 120.72146 * 179.97438 * 10 9 7 12 12 C 1.31897 * 122.15155 * 359.97438 * 11 10 9 13 13 C 1.39909 * 121.11101 * 359.97438 * 12 11 10 14 14 C 1.47837 * 120.43412 * 180.02562 * 13 12 11 15 15 C 1.35410 * 125.07833 * 359.72520 * 14 13 12 16 16 C 1.46469 * 106.09012 * 179.86105 * 15 14 13 17 17 C 1.40602 * 105.68721 * 0.38729 * 16 15 14 18 18 C 1.38891 * 119.30077 * 179.76343 * 17 16 15 19 19 C 1.37889 * 120.04328 * 359.97438 * 18 17 16 20 20 C 1.38701 * 120.74442 * 0.02562 * 19 18 17 21 21 C 1.37967 * 120.24709 * 359.97438 * 20 19 18 22 22 F 1.35097 * 120.23062 * 180.02562 * 21 20 19 23 23 O 1.34772 * 125.08393 * 180.02562 * 14 13 12 24 24 C 1.39423 * 119.13530 * 359.75119 * 13 12 11 25 25 H 0.96999 * 120.00494 * 359.97438 * 1 2 3 26 26 H 1.08007 * 119.63856 * 359.97438 * 10 9 7 27 27 H 1.07993 * 119.44213 * 180.02562 * 12 11 10 28 28 H 1.08000 * 126.95408 * 359.97438 * 15 14 13 29 29 H 1.08004 * 119.97375 * 180.02562 * 18 17 16 30 30 H 1.08003 * 119.62889 * 180.02562 * 19 18 17 31 31 H 1.08004 * 119.88086 * 180.02562 * 20 19 18 32 32 H 1.07998 * 120.96866 * 180.27790 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6966 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2117 -0.0005 8 1 3.0511 -1.2328 -0.2798 9 6 1.3507 -2.4080 0.3703 10 6 1.8336 -3.6565 -0.0675 11 7 1.2247 -4.7704 0.2762 12 6 0.1475 -4.7755 1.0373 13 6 -0.4025 -3.5828 1.5195 14 6 -1.6101 -3.6060 2.3720 15 6 -2.2754 -4.7236 2.7489 16 6 -3.3920 -4.2701 3.5812 17 6 -3.2926 -2.8681 3.6197 18 6 -4.2306 -2.1397 4.3399 19 6 -5.2463 -2.7911 5.0073 20 6 -5.3461 -4.1741 4.9706 21 6 -4.4259 -4.9187 4.2618 22 9 -4.5237 -6.2656 4.2258 23 8 -2.2168 -2.5176 2.8856 24 6 0.2064 -2.3726 1.1904 25 1 -0.4851 0.8400 0.0004 26 1 2.7135 -3.6997 -0.6923 27 1 -0.3173 -5.7161 1.2931 28 1 -2.0309 -5.7431 2.4897 29 1 -4.1649 -1.0623 4.3764 30 1 -5.9723 -2.2181 5.5649 31 1 -6.1475 -4.6699 5.4981 32 1 -0.1905 -1.4348 1.5502 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244925019.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:19 Heat of formation + Delta-G solvation = -12.150387 kcal Electronic energy + Delta-G solvation = -20444.909419 eV Core-core repulsion = 17057.012187 eV Total energy + Delta-G solvation = -3387.897232 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.96743 -43.50701 -40.26270 -38.67536 -36.09907 -34.39078 -32.95935 -32.29218 -31.14376 -29.39894 -27.62776 -24.90208 -24.35955 -23.48415 -22.58709 -22.03335 -19.42539 -19.03774 -18.20096 -17.45251 -17.42638 -17.28773 -16.99312 -16.45673 -16.44707 -16.30183 -15.89581 -14.87122 -14.43176 -14.32370 -14.23871 -13.97096 -13.61368 -13.36673 -13.24683 -12.96217 -12.75211 -12.73608 -12.57875 -12.25319 -11.84687 -11.53849 -11.26463 -10.51290 -10.23267 -9.90897 -9.59084 -8.87372 -8.72036 -6.54888 -0.52921 0.12362 0.42726 0.84444 1.37428 1.46018 1.50952 1.56430 1.63206 2.14587 2.47879 2.64849 3.05625 3.20501 3.57125 3.71390 3.79487 3.92238 4.07531 4.20031 4.34933 4.40778 4.45094 4.65214 4.78797 4.88335 4.93669 5.06192 5.12206 5.15673 5.21542 5.23726 5.49203 5.68562 5.77202 5.82375 6.09333 6.33842 6.62459 6.65174 7.51808 8.15507 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.021130 B = 0.004654 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.836160 B = 6015.046989 C = 7261.368261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.034 3.966 3 Si 0.990 3.010 4 H -0.252 1.252 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.473 4.473 8 H 0.096 0.904 9 C 0.037 3.963 10 C -0.024 4.024 11 N -0.470 5.470 12 C -0.016 4.016 13 C -0.075 4.075 14 C 0.092 3.908 15 C -0.201 4.201 16 C -0.183 4.183 17 C 0.051 3.949 18 C -0.121 4.121 19 C -0.052 4.052 20 C -0.156 4.156 21 C 0.122 3.878 22 F -0.140 7.140 23 O -0.205 6.205 24 C -0.132 4.132 25 H 0.294 0.706 26 H 0.148 0.852 27 H 0.155 0.845 28 H 0.175 0.825 29 H 0.157 0.843 30 H 0.194 0.806 31 H 0.178 0.822 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.496 -0.278 9.644 14.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.183 4.183 3 Si 0.810 3.190 4 H -0.176 1.176 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.502 4.502 8 H 0.114 0.886 9 C 0.033 3.967 10 C -0.185 4.185 11 N -0.177 5.177 12 C -0.174 4.174 13 C -0.078 4.078 14 C 0.044 3.956 15 C -0.220 4.220 16 C -0.184 4.184 17 C 0.003 3.997 18 C -0.139 4.139 19 C -0.069 4.069 20 C -0.175 4.175 21 C 0.102 3.898 22 F -0.118 7.118 23 O -0.107 6.107 24 C -0.158 4.158 25 H 0.105 0.895 26 H 0.165 0.835 27 H 0.173 0.827 28 H 0.192 0.808 29 H 0.174 0.826 30 H 0.211 0.789 31 H 0.195 0.805 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.305 -0.714 9.283 13.888 hybrid contribution 0.210 0.991 -0.140 1.023 sum -10.094 0.277 9.144 13.623 Atomic orbital electron populations 1.69832 1.09403 1.31514 1.33264 1.26949 0.95476 1.05153 0.90737 0.85117 0.78708 0.74718 0.80503 1.17621 1.19247 1.18238 1.19919 0.98895 0.91449 1.39913 0.88566 1.18783 0.92475 0.94943 0.90494 1.22897 1.03104 0.87682 1.04789 1.67053 1.07957 1.31664 1.10982 1.22083 0.96474 0.95518 1.03277 1.18892 0.93163 0.96214 0.99510 1.20545 0.94293 0.83913 0.96865 1.22511 0.96418 0.99410 1.03657 1.20030 0.99325 0.94403 1.04661 1.20124 0.89855 0.92906 0.96798 1.20506 0.93319 1.01573 0.98539 1.21293 0.96266 0.93071 0.96290 1.21466 0.99863 0.94926 1.01227 1.17325 0.95798 0.76848 0.99788 1.91468 1.95743 1.29618 1.94983 1.84063 1.36169 1.34868 1.55563 1.21865 0.98569 0.96222 0.99143 0.89486 0.83482 0.82744 0.80775 0.82556 0.78890 0.80512 0.86293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.35 10.93 21.82 0.24 -41.11 16 2 C 0.03 1.62 5.17 85.25 0.44 2.06 16 3 Si 0.99 35.80 29.59 68.60 2.03 37.83 16 4 H -0.25 -8.69 7.11 99.48 0.71 -7.98 16 5 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 6 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 7 C -0.47 -24.09 9.08 23.47 0.21 -23.88 16 8 H 0.10 4.54 7.90 -2.91 -0.02 4.52 16 9 C 0.04 1.99 5.59 -21.22 -0.12 1.87 16 10 C -0.02 -1.19 10.96 85.38 0.94 -0.25 16 11 N -0.47 -22.91 10.32 -192.57 -1.99 -24.90 16 12 C -0.02 -0.73 10.71 85.09 0.91 0.18 16 13 C -0.08 -3.66 5.88 -20.05 -0.12 -3.78 16 14 C 0.09 4.01 6.98 24.16 0.17 4.18 16 15 C -0.20 -7.58 10.46 23.76 0.25 -7.33 16 16 C -0.18 -6.23 6.37 -20.19 -0.13 -6.36 16 17 C 0.05 1.75 7.40 23.00 0.17 1.92 16 18 C -0.12 -2.91 10.06 22.34 0.22 -2.68 16 19 C -0.05 -0.85 10.01 22.30 0.22 -0.63 16 20 C -0.16 -2.94 10.01 22.32 0.22 -2.72 16 21 C 0.12 3.36 7.34 22.57 0.17 3.52 16 22 F -0.14 -3.93 17.28 44.97 0.78 -3.15 16 23 O -0.20 -8.80 10.33 -12.88 -0.13 -8.93 16 24 C -0.13 -7.06 8.47 23.19 0.20 -6.87 16 25 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 26 H 0.15 6.63 8.06 -2.91 -0.02 6.61 16 27 H 0.16 6.09 6.90 -2.91 -0.02 6.07 16 28 H 0.17 5.77 7.19 -2.91 -0.02 5.75 16 29 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 30 H 0.19 1.27 8.06 -2.91 -0.02 1.24 16 31 H 0.18 2.01 8.06 -2.91 -0.02 1.98 16 32 H 0.12 6.64 6.08 -2.91 -0.02 6.63 16 Total: -1.00 -63.29 292.88 5.86 -57.44 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 1.18 Total: 23.57 kcal Atomic # 6 Polarization: -44.50 SS G_CDS: 3.76 Total: -40.74 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: -1.75 Total: -66.01 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.13 Total: -8.93 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.78 Total: -3.15 kcal Atomic # 14 Polarization: 35.80 SS G_CDS: 2.03 Total: 37.83 kcal Total: -63.29 5.86 -57.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244925019.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.285 kcal (2) G-P(sol) polarization free energy of solvation -63.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds