Wall clock time and date at job start Tue Mar 31 2020 05:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86799 * 119.99998 * 2 1 4 4 H 1.48498 * 109.47073 * 274.98776 * 3 2 1 5 5 H 1.48497 * 109.46769 * 34.98820 * 3 2 1 6 6 H 1.48501 * 109.46854 * 154.98736 * 3 2 1 7 7 C 1.40035 * 119.99667 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99765 * 173.74013 * 7 2 1 9 9 C 1.41427 * 120.00116 * 354.00833 * 7 2 1 10 10 C 1.40419 * 119.76705 * 185.72923 * 9 7 2 11 11 C 1.39611 * 118.79830 * 179.75691 * 10 9 7 12 12 C 1.47766 * 120.84463 * 180.25791 * 11 10 9 13 13 C 1.35449 * 125.08173 * 179.97438 * 12 11 10 14 14 C 1.46442 * 106.08910 * 179.97438 * 13 12 11 15 15 C 1.40614 * 105.69319 * 0.34248 * 14 13 12 16 16 C 1.38902 * 119.29870 * 179.82860 * 15 14 13 17 17 C 1.37885 * 120.04244 * 359.97438 * 16 15 14 18 18 C 1.38712 * 120.74810 * 0.02562 * 17 16 15 19 19 C 1.37963 * 120.24980 * 359.97438 * 18 17 16 20 20 F 1.35095 * 120.22680 * 179.97438 * 19 18 17 21 21 O 1.34800 * 125.09220 * 0.28732 * 12 11 10 22 22 C 1.40285 * 118.30652 * 0.51071 * 11 10 9 23 23 C 1.38405 * 119.39674 * 359.75145 * 22 11 10 24 24 N 1.31526 * 121.17694 * 359.97438 * 23 22 11 25 25 H 0.96992 * 120.00161 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.60052 * 359.97438 * 10 9 7 27 27 H 1.07995 * 126.95837 * 0.04560 * 13 12 11 28 28 H 1.08004 * 119.98018 * 180.02562 * 16 15 14 29 29 H 1.08002 * 119.62495 * 180.02562 * 17 16 15 30 30 H 1.08002 * 119.87482 * 179.97438 * 18 17 16 31 31 H 1.07993 * 120.30309 * 179.72699 * 22 11 10 32 32 H 1.08000 * 119.40883 * 180.02562 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3835 2.1073 -1.3948 5 1 1.4955 2.6198 0.8028 6 1 3.5877 1.4120 0.5920 7 6 2.0075 -1.2128 -0.0005 8 1 3.0827 -1.2155 -0.1025 9 6 1.3061 -2.4343 0.1268 10 6 2.0188 -3.6381 0.2470 11 6 1.3061 -4.8316 0.3767 12 6 2.0102 -6.1237 0.5118 13 6 1.4066 -7.3291 0.6429 14 6 2.4854 -8.3143 0.7433 15 6 3.6810 -7.5782 0.6678 16 6 4.8965 -8.2466 0.7393 17 6 4.9229 -9.6177 0.8834 18 6 3.7446 -10.3457 0.9581 19 6 2.5254 -9.7037 0.8893 20 9 1.3781 -10.4133 0.9616 21 8 3.3491 -6.2785 0.5292 22 6 -0.0955 -4.7734 0.3699 23 6 -0.7240 -3.5470 0.2415 24 7 -0.0305 -2.4353 0.1262 25 1 -0.4850 0.8400 0.0004 26 1 3.0989 -3.6405 0.2427 27 1 0.3447 -7.5244 0.6673 28 1 5.8216 -7.6920 0.6829 29 1 5.8718 -10.1305 0.9388 30 1 3.7817 -11.4192 1.0706 31 1 -0.6789 -5.6774 0.4637 32 1 -1.8030 -3.5019 0.2368 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244927671.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:30 Heat of formation + Delta-G solvation = 13.673362 kcal Electronic energy + Delta-G solvation = -20167.941472 eV Core-core repulsion = 16781.164042 eV Total energy + Delta-G solvation = -3386.777430 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.90443 -42.26147 -38.32187 -37.59417 -33.94119 -32.84540 -31.48855 -30.24173 -30.05670 -28.17957 -25.90468 -23.62618 -22.97692 -21.76220 -21.27808 -20.48681 -18.05042 -17.90157 -16.45610 -16.27796 -16.20511 -15.60964 -15.38071 -15.32306 -14.84947 -14.34649 -14.23383 -13.67041 -13.10757 -13.02038 -12.64957 -12.44190 -12.17297 -11.93448 -11.76871 -11.57556 -11.32779 -11.22274 -10.89753 -10.58684 -10.22856 -10.03887 -9.51588 -9.05374 -8.51002 -7.84032 -7.76181 -7.49620 -6.55347 -4.67095 0.67514 1.16075 1.96016 2.61396 2.77242 3.03359 3.04605 3.09129 3.33870 3.49736 3.86068 4.09283 4.42022 4.62460 4.69559 4.83427 5.03310 5.21374 5.40930 5.67677 5.72295 5.81455 5.92045 5.97852 6.09326 6.15716 6.19518 6.44570 6.50145 6.56225 6.70181 6.93756 7.08177 7.20828 7.31057 7.51248 7.77398 8.08420 8.48006 8.74038 9.92960 10.17616 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.032446 B = 0.003664 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.764936 B = 7640.808822 C = 8490.040711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.067 3.933 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.425 4.425 8 H 0.087 0.913 9 C 0.251 3.749 10 C -0.235 4.235 11 C 0.012 3.988 12 C 0.124 3.876 13 C -0.210 4.210 14 C -0.155 4.155 15 C 0.075 3.925 16 C -0.113 4.113 17 C -0.079 4.079 18 C -0.174 4.174 19 C 0.138 3.862 20 F -0.135 7.135 21 O -0.181 6.181 22 C -0.291 4.291 23 C 0.130 3.870 24 N -0.478 5.478 25 H 0.275 0.725 26 H 0.108 0.892 27 H 0.162 0.838 28 H 0.138 0.862 29 H 0.142 0.858 30 H 0.139 0.861 31 H 0.103 0.897 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.217 -12.884 1.400 14.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.332 5.332 2 C -0.159 4.159 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.456 4.456 8 H 0.105 0.895 9 C 0.127 3.873 10 C -0.258 4.258 11 C 0.005 3.995 12 C 0.076 3.924 13 C -0.229 4.229 14 C -0.157 4.157 15 C 0.027 3.973 16 C -0.132 4.132 17 C -0.097 4.097 18 C -0.193 4.193 19 C 0.119 3.881 20 F -0.114 7.114 21 O -0.082 6.082 22 C -0.314 4.314 23 C -0.035 4.035 24 N -0.191 5.191 25 H 0.086 0.914 26 H 0.127 0.873 27 H 0.179 0.821 28 H 0.156 0.844 29 H 0.160 0.840 30 H 0.157 0.843 31 H 0.121 0.879 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.763 -11.713 1.291 13.118 hybrid contribution 0.441 -0.445 0.133 0.641 sum 6.204 -12.158 1.424 13.724 Atomic orbital electron populations 1.70118 1.07283 1.28142 1.27637 1.26094 0.94951 1.01266 0.93544 0.86266 0.80613 0.80577 0.79184 1.19347 1.19921 1.18352 1.19682 0.94836 0.89409 1.41629 0.89510 1.18543 0.88247 0.91549 0.88940 1.21997 0.99092 0.92599 1.12139 1.17736 0.92524 0.87177 1.02016 1.20924 0.78603 0.95297 0.97569 1.22277 0.99147 0.89463 1.11990 1.19894 0.94842 0.92932 1.08051 1.19454 0.94593 0.81704 1.01570 1.19981 0.94503 0.93712 1.04967 1.20651 0.97991 0.92143 0.98942 1.20933 0.90603 1.00934 1.06794 1.17033 0.82070 0.86959 1.02042 1.91482 1.48340 1.78059 1.93489 1.84097 1.24337 1.24675 1.75047 1.21191 0.91816 0.98937 1.19439 1.22462 0.99074 0.88169 0.93825 1.68737 1.07350 1.26626 1.16358 0.91351 0.87348 0.82091 0.84445 0.83988 0.84343 0.87906 0.85534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.35 11.48 55.55 0.64 -17.71 16 2 C 0.07 1.66 5.49 -17.34 -0.10 1.57 16 3 Si 0.91 17.99 29.56 -169.99 -5.03 12.96 16 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 7 C -0.42 -11.04 9.13 -37.70 -0.34 -11.39 16 8 H 0.09 2.10 7.85 -52.49 -0.41 1.69 16 9 C 0.25 6.70 6.55 -85.03 -0.56 6.15 16 10 C -0.23 -5.72 9.53 -38.25 -0.36 -6.09 16 11 C 0.01 0.26 5.90 -104.72 -0.62 -0.36 16 12 C 0.12 2.47 6.99 -36.68 -0.26 2.21 16 13 C -0.21 -3.74 10.49 -37.28 -0.39 -4.13 16 14 C -0.16 -2.57 6.37 -105.13 -0.67 -3.24 16 15 C 0.08 1.22 7.40 -38.44 -0.28 0.94 16 16 C -0.11 -1.38 10.06 -39.46 -0.40 -1.78 16 17 C -0.08 -0.78 10.01 -39.54 -0.40 -1.18 16 18 C -0.17 -1.92 10.01 -39.51 -0.40 -2.31 16 19 C 0.14 1.97 7.35 -39.11 -0.29 1.69 16 20 F -0.14 -1.96 17.28 2.25 0.04 -1.92 16 21 O -0.18 -3.45 10.35 2.80 0.03 -3.42 16 22 C -0.29 -6.28 9.63 -38.75 -0.37 -6.65 16 23 C 0.13 3.02 11.16 -17.62 -0.20 2.82 16 24 N -0.48 -12.78 7.87 -11.23 -0.09 -12.86 16 25 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 26 H 0.11 2.50 7.95 -52.48 -0.42 2.09 16 27 H 0.16 2.61 7.26 -52.49 -0.38 2.23 16 28 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 29 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.10 1.92 7.03 -52.49 -0.37 1.55 16 32 H 0.13 2.55 8.06 -52.49 -0.42 2.13 16 LS Contribution 294.56 15.07 4.44 4.44 Total: -1.00 -28.82 294.56 -8.00 -36.82 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -2.41 Total: 3.45 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -5.63 Total: -21.76 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.55 Total: -30.57 kcal Atomic # 8 Polarization: -3.45 SS G_CDS: 0.03 Total: -3.42 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.82 -8.00 -36.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244927671.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.492 kcal (2) G-P(sol) polarization free energy of solvation -28.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds