Wall clock time and date at job start Tue Mar 31 2020 05:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86803 * 119.99807 * 2 1 4 4 H 1.48498 * 109.46767 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47031 * 299.99589 * 3 2 1 6 6 H 1.48500 * 109.46979 * 60.00006 * 3 2 1 7 7 C 1.40001 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99982 * 179.97438 * 7 2 1 9 9 C 1.41352 * 120.00216 * 0.02562 * 7 2 1 10 10 C 1.40710 * 119.76290 * 180.02562 * 9 7 2 11 11 C 1.38296 * 119.20287 * 179.97438 * 10 9 7 12 12 C 1.38688 * 118.69792 * 359.74252 * 11 10 9 13 13 C 1.39971 * 119.46094 * 0.49901 * 12 11 10 14 14 C 1.48129 * 119.61664 * 179.76678 * 13 12 11 15 15 C 1.39145 * 120.12964 * 359.73146 * 14 13 12 16 16 C 1.38351 * 120.55943 * 180.28043 * 15 14 13 17 17 C 1.38171 * 120.40376 * 359.47938 * 16 15 14 18 18 F 1.35099 * 120.08832 * 180.24352 * 17 16 15 19 19 C 1.39659 * 119.82815 * 0.50959 * 17 16 15 20 20 C 1.46820 * 134.28381 * 179.77048 * 19 17 16 21 21 C 1.33980 * 106.16134 * 179.97438 * 20 19 17 22 22 O 1.34472 * 110.10099 * 0.02562 * 21 20 19 23 23 C 1.34690 * 110.89888 * 0.02562 * 22 21 20 24 24 N 1.32315 * 120.76542 * 359.49458 * 13 12 11 25 25 H 0.97005 * 120.00558 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.40287 * 359.97438 * 10 9 7 27 27 H 1.07995 * 120.65050 * 180.02562 * 11 10 9 28 28 H 1.08004 * 120.27037 * 180.25027 * 12 11 10 29 29 H 1.08002 * 119.71687 * 359.97438 * 15 14 13 30 30 H 1.07998 * 119.79928 * 179.72422 * 16 15 14 31 31 H 1.08003 * 126.91576 * 0.02562 * 20 19 17 32 32 H 1.08002 * 124.94888 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8827 2.3965 1.2125 7 6 2.0075 -1.2125 0.0005 8 1 3.0875 -1.2125 0.0001 9 6 1.3008 -2.4366 0.0005 10 6 2.0094 -3.6523 0.0016 11 6 1.3062 -4.8431 0.0022 12 6 -0.0799 -4.7981 0.0071 13 6 -0.7284 -3.5577 0.0007 14 6 -2.2088 -3.5056 0.0007 15 6 -2.9491 -4.6838 0.0013 16 6 -4.3321 -4.6455 -0.0046 17 6 -4.9982 -3.4349 -0.0003 18 9 -6.3488 -3.4050 -0.0011 19 6 -4.2715 -2.2423 -0.0008 20 6 -4.6358 -0.8200 -0.0014 21 6 -3.4817 -0.1394 -0.0011 22 8 -2.4422 -0.9925 -0.0009 23 6 -2.8690 -2.2700 -0.0016 24 7 -0.0345 -2.4311 0.0001 25 1 -0.4851 0.8400 -0.0004 26 1 3.0893 -3.6554 0.0021 27 1 1.8264 -5.7896 0.0034 28 1 -0.6543 -5.7127 0.0117 29 1 -2.4398 -5.6361 0.0014 30 1 -4.8945 -5.5675 -0.0086 31 1 -5.6332 -0.4058 -0.0012 32 1 -3.3984 0.9374 -0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244929422.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:31 Heat of formation + Delta-G solvation = 23.365017 kcal Electronic energy + Delta-G solvation = -21280.367158 eV Core-core repulsion = 17894.009990 eV Total energy + Delta-G solvation = -3386.357168 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.58929 -41.78826 -38.41884 -36.94963 -33.72237 -32.43188 -31.00828 -30.42134 -29.12573 -28.25015 -25.57150 -23.33641 -22.48759 -21.60744 -20.94594 -19.92780 -17.69356 -17.28258 -17.00570 -15.73398 -15.67808 -15.64469 -14.86996 -14.85282 -14.54451 -14.40164 -13.85065 -13.19747 -12.83083 -12.63781 -12.51975 -12.35480 -11.96553 -11.45144 -11.43112 -11.15412 -11.11426 -11.01779 -10.73613 -10.45793 -9.95146 -9.79477 -9.38571 -8.53662 -8.16109 -7.94553 -7.65769 -7.08175 -6.40299 -4.54526 1.00575 1.71159 2.55888 2.83420 3.05431 3.06975 3.10544 3.16549 3.46165 3.92592 4.03637 4.49156 4.76929 4.77866 5.04973 5.17894 5.32794 5.66365 5.71263 5.87602 5.88218 6.02824 6.19926 6.30940 6.38289 6.53002 6.56655 6.67160 6.73082 6.94651 7.03558 7.07964 7.26320 7.50744 7.65813 7.80203 7.96850 8.17618 8.62168 8.87070 9.99037 10.28209 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.017719 B = 0.006861 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.860170 B = 4080.095939 C = 5650.111702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.693 5.693 2 C 0.067 3.933 3 Si 0.902 3.098 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.428 4.428 8 H 0.084 0.916 9 C 0.254 3.746 10 C -0.271 4.271 11 C -0.059 4.059 12 C -0.301 4.301 13 C 0.170 3.830 14 C -0.008 4.008 15 C -0.073 4.073 16 C -0.173 4.173 17 C 0.126 3.874 18 F -0.143 7.143 19 C -0.181 4.181 20 C -0.231 4.231 21 C 0.015 3.985 22 O -0.103 6.103 23 C 0.119 3.881 24 N -0.459 5.459 25 H 0.269 0.731 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.145 0.855 30 H 0.136 0.864 31 H 0.150 0.850 32 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.030 -1.646 -0.007 7.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.313 5.313 2 C -0.160 4.160 3 Si 0.726 3.274 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.459 4.459 8 H 0.102 0.898 9 C 0.129 3.871 10 C -0.294 4.294 11 C -0.083 4.083 12 C -0.324 4.324 13 C 0.025 3.975 14 C -0.010 4.010 15 C -0.093 4.093 16 C -0.192 4.192 17 C 0.107 3.893 18 F -0.122 7.122 19 C -0.182 4.182 20 C -0.250 4.250 21 C -0.053 4.053 22 O 0.002 5.998 23 C 0.068 3.932 24 N -0.172 5.172 25 H 0.081 0.919 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.162 0.838 30 H 0.154 0.846 31 H 0.168 0.832 32 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -7.343 -0.576 -0.007 7.365 hybrid contribution 0.348 -0.033 0.000 0.350 sum -6.995 -0.610 -0.007 7.021 Atomic orbital electron populations 1.70216 1.06553 1.27255 1.27293 1.26068 0.95004 1.00814 0.94065 0.86361 0.81002 0.81573 0.78460 1.18496 1.19911 1.19914 1.19606 0.94226 0.89283 1.42815 0.89827 1.18516 0.87747 0.92069 0.88747 1.21813 0.98806 0.93588 1.15198 1.20769 0.93770 0.96713 0.97043 1.21155 0.94607 0.96499 1.20176 1.19561 0.90714 0.90532 0.96643 1.17927 0.92594 0.88194 1.02260 1.20796 0.92047 0.97407 0.99018 1.20751 0.94797 0.96042 1.07655 1.17015 0.75968 0.92586 1.03778 1.91431 1.29384 1.97403 1.93962 1.19897 0.93904 0.93555 1.10889 1.22230 0.99377 0.90347 1.13092 1.24108 0.85064 0.96433 0.99681 1.84759 1.31389 1.12178 1.71462 1.19351 0.89463 0.85529 0.98869 1.68841 1.07431 1.24729 1.16197 0.91933 0.88249 0.88378 0.88291 0.83781 0.84619 0.83218 0.78330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.32 9.38 55.55 0.52 -16.80 16 2 C 0.07 1.64 5.50 -17.35 -0.10 1.54 16 3 Si 0.90 18.00 29.56 -169.99 -5.02 12.98 16 4 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 5 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.43 -11.15 9.14 -37.74 -0.34 -11.50 16 8 H 0.08 2.05 7.85 -52.48 -0.41 1.64 16 9 C 0.25 6.82 6.55 -85.01 -0.56 6.26 16 10 C -0.27 -6.52 9.83 -38.63 -0.38 -6.90 16 11 C -0.06 -1.29 10.15 -39.39 -0.40 -1.69 16 12 C -0.30 -6.57 9.48 -38.77 -0.37 -6.94 16 13 C 0.17 4.09 6.74 -82.95 -0.56 3.53 16 14 C -0.01 -0.18 5.89 -104.80 -0.62 -0.79 16 15 C -0.07 -1.25 9.40 -39.20 -0.37 -1.62 16 16 C -0.17 -2.69 10.00 -39.56 -0.40 -3.08 16 17 C 0.13 2.17 7.34 -39.08 -0.29 1.88 16 18 F -0.14 -2.34 17.27 2.25 0.04 -2.30 16 19 C -0.18 -3.40 6.38 -105.13 -0.67 -4.07 16 20 C -0.23 -3.77 11.14 -37.61 -0.42 -4.19 16 21 C 0.01 0.25 11.96 29.24 0.35 0.60 16 22 O -0.10 -2.23 7.67 4.18 0.03 -2.19 16 23 C 0.12 2.54 6.97 -38.12 -0.27 2.28 16 24 N -0.46 -12.33 6.63 -7.70 -0.05 -12.38 16 25 H 0.27 6.04 8.29 -40.82 -0.34 5.70 16 26 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 27 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.10 1.82 6.16 -52.48 -0.32 1.50 16 29 H 0.14 2.10 6.13 -52.49 -0.32 1.78 16 30 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.15 1.99 8.06 -52.48 -0.42 1.57 16 32 H 0.20 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 287.00 15.07 4.32 4.32 Total: -1.00 -29.37 287.00 -7.84 -37.21 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -2.31 Total: 3.83 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -5.38 Total: -24.67 kcal Atomic # 7 Polarization: -29.64 SS G_CDS: 0.47 Total: -29.17 kcal Atomic # 8 Polarization: -2.23 SS G_CDS: 0.03 Total: -2.19 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.02 Total: 12.98 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.37 -7.84 -37.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244929422.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.570 kcal (2) G-P(sol) polarization free energy of solvation -29.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds