Wall clock time and date at job start Tue Mar 31 2020 05:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86803 * 119.99807 * 2 1 4 4 H 1.48498 * 109.46767 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47031 * 299.99589 * 3 2 1 6 6 H 1.48500 * 109.46979 * 60.00006 * 3 2 1 7 7 C 1.40001 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99982 * 179.97438 * 7 2 1 9 9 C 1.41352 * 120.00216 * 0.02562 * 7 2 1 10 10 C 1.40710 * 119.76290 * 180.02562 * 9 7 2 11 11 C 1.38296 * 119.20287 * 179.97438 * 10 9 7 12 12 C 1.38688 * 118.69792 * 359.74252 * 11 10 9 13 13 C 1.39971 * 119.46094 * 0.49901 * 12 11 10 14 14 C 1.48129 * 119.61664 * 179.76678 * 13 12 11 15 15 C 1.39145 * 120.12964 * 359.73146 * 14 13 12 16 16 C 1.38351 * 120.55943 * 180.28043 * 15 14 13 17 17 C 1.38171 * 120.40376 * 359.47938 * 16 15 14 18 18 F 1.35099 * 120.08832 * 180.24352 * 17 16 15 19 19 C 1.39659 * 119.82815 * 0.50959 * 17 16 15 20 20 C 1.46820 * 134.28381 * 179.77048 * 19 17 16 21 21 C 1.33980 * 106.16134 * 179.97438 * 20 19 17 22 22 O 1.34472 * 110.10099 * 0.02562 * 21 20 19 23 23 C 1.34690 * 110.89888 * 0.02562 * 22 21 20 24 24 N 1.32315 * 120.76542 * 359.49458 * 13 12 11 25 25 H 0.97005 * 120.00558 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.40287 * 359.97438 * 10 9 7 27 27 H 1.07995 * 120.65050 * 180.02562 * 11 10 9 28 28 H 1.08004 * 120.27037 * 180.25027 * 12 11 10 29 29 H 1.08002 * 119.71687 * 359.97438 * 15 14 13 30 30 H 1.07998 * 119.79928 * 179.72422 * 16 15 14 31 31 H 1.08003 * 126.91576 * 0.02562 * 20 19 17 32 32 H 1.08002 * 124.94888 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8827 2.3965 1.2125 7 6 2.0075 -1.2125 0.0005 8 1 3.0875 -1.2125 0.0001 9 6 1.3008 -2.4366 0.0005 10 6 2.0094 -3.6523 0.0016 11 6 1.3062 -4.8431 0.0022 12 6 -0.0799 -4.7981 0.0071 13 6 -0.7284 -3.5577 0.0007 14 6 -2.2088 -3.5056 0.0007 15 6 -2.9491 -4.6838 0.0013 16 6 -4.3321 -4.6455 -0.0046 17 6 -4.9982 -3.4349 -0.0003 18 9 -6.3488 -3.4050 -0.0011 19 6 -4.2715 -2.2423 -0.0008 20 6 -4.6358 -0.8200 -0.0014 21 6 -3.4817 -0.1394 -0.0011 22 8 -2.4422 -0.9925 -0.0009 23 6 -2.8690 -2.2700 -0.0016 24 7 -0.0345 -2.4311 0.0001 25 1 -0.4851 0.8400 -0.0004 26 1 3.0893 -3.6554 0.0021 27 1 1.8264 -5.7896 0.0034 28 1 -0.6543 -5.7127 0.0117 29 1 -2.4398 -5.6361 0.0014 30 1 -4.8945 -5.5675 -0.0086 31 1 -5.6332 -0.4058 -0.0012 32 1 -3.3984 0.9374 -0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244929422.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:30 Heat of formation + Delta-G solvation = 8.309339 kcal Electronic energy + Delta-G solvation = -21281.020021 eV Core-core repulsion = 17894.009990 eV Total energy + Delta-G solvation = -3387.010032 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.90516 -43.17829 -40.12804 -38.40491 -35.49420 -33.91047 -32.58987 -32.13269 -30.53866 -29.80379 -27.35500 -24.83009 -23.96713 -23.14202 -22.57774 -21.42178 -19.36773 -18.73494 -18.41355 -17.28918 -17.08100 -17.07203 -16.48018 -16.22277 -16.15022 -15.95015 -15.43838 -14.79577 -14.29251 -14.14850 -14.03332 -13.91674 -13.33575 -12.99543 -12.86712 -12.71819 -12.64851 -12.61395 -12.41490 -12.09766 -11.67508 -11.31790 -11.02026 -10.16868 -9.76653 -9.48143 -9.45667 -8.63428 -8.17555 -6.44046 -0.42378 0.34353 0.95358 1.19585 1.42055 1.49844 1.54817 1.61086 2.15701 2.26022 2.56093 2.99739 3.14051 3.46003 3.66444 3.85010 3.94243 4.01474 4.35340 4.40947 4.51280 4.63600 4.75525 4.79551 4.91340 4.95322 5.04107 5.13868 5.24467 5.40509 5.48558 5.53512 5.70519 5.76923 5.89408 6.19841 6.30803 6.44543 6.79106 7.00590 8.18619 8.52613 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.017719 B = 0.006861 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.860170 B = 4080.095939 C = 5650.111702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.718 5.718 2 C 0.023 3.977 3 Si 0.978 3.022 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.468 4.468 8 H 0.083 0.917 9 C 0.220 3.780 10 C -0.299 4.299 11 C -0.057 4.057 12 C -0.299 4.299 13 C 0.149 3.851 14 C -0.051 4.051 15 C -0.056 4.056 16 C -0.159 4.159 17 C 0.127 3.873 18 F -0.136 7.136 19 C -0.197 4.197 20 C -0.227 4.227 21 C 0.004 3.996 22 O -0.140 6.140 23 C 0.085 3.915 24 N -0.491 5.491 25 H 0.277 0.723 26 H 0.107 0.893 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.172 0.828 30 H 0.179 0.821 31 H 0.181 0.819 32 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.567 -2.637 -0.006 8.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.201 4.201 3 Si 0.799 3.201 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.499 4.499 8 H 0.101 0.899 9 C 0.094 3.906 10 C -0.321 4.321 11 C -0.081 4.081 12 C -0.322 4.322 13 C 0.005 3.995 14 C -0.052 4.052 15 C -0.075 4.075 16 C -0.178 4.178 17 C 0.107 3.893 18 F -0.114 7.114 19 C -0.199 4.199 20 C -0.246 4.246 21 C -0.063 4.063 22 O -0.036 6.036 23 C 0.035 3.965 24 N -0.205 5.205 25 H 0.087 0.913 26 H 0.125 0.875 27 H 0.155 0.845 28 H 0.156 0.844 29 H 0.189 0.811 30 H 0.197 0.803 31 H 0.198 0.802 32 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -8.899 -1.594 -0.006 9.040 hybrid contribution 0.663 0.135 0.000 0.676 sum -8.236 -1.459 -0.007 8.364 Atomic orbital electron populations 1.70326 1.07745 1.28495 1.27278 1.26868 0.95957 1.03780 0.93520 0.85228 0.79389 0.76893 0.78617 1.18412 1.19237 1.19249 1.19896 0.94460 0.90472 1.45082 0.89873 1.19006 0.88566 0.93444 0.89583 1.22001 0.99419 0.93983 1.16731 1.21217 0.94101 0.97479 0.95263 1.21612 0.95019 0.97256 1.18321 1.20213 0.92453 0.90855 0.95989 1.18208 0.91577 0.89888 1.05569 1.21123 0.92674 0.96980 0.96696 1.21161 0.94228 0.97049 1.05340 1.17207 0.76285 0.92742 1.03065 1.91451 1.28778 1.97390 1.93812 1.20234 0.93185 0.95298 1.11172 1.22605 1.00570 0.89266 1.12110 1.24857 0.84472 0.97609 0.99327 1.84711 1.33616 1.12967 1.72305 1.19712 0.90812 0.85720 1.00299 1.68815 1.07536 1.26579 1.17546 0.91254 0.87498 0.84453 0.84404 0.81051 0.80325 0.80155 0.75023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -37.35 9.38 21.83 0.20 -37.14 16 2 C 0.02 1.15 5.50 85.28 0.47 1.62 16 3 Si 0.98 38.03 29.56 68.60 2.03 40.05 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 5 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 6 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 7 C -0.47 -25.60 9.14 23.46 0.21 -25.39 16 8 H 0.08 4.31 7.85 -2.91 -0.02 4.29 16 9 C 0.22 12.32 6.55 40.26 0.26 12.58 16 10 C -0.30 -14.75 9.83 22.89 0.23 -14.53 16 11 C -0.06 -2.42 10.15 22.39 0.23 -2.20 16 12 C -0.30 -12.71 9.48 22.80 0.22 -12.49 16 13 C 0.15 7.27 6.74 42.12 0.28 7.55 16 14 C -0.05 -2.16 5.89 -19.98 -0.12 -2.28 16 15 C -0.06 -1.76 9.40 22.51 0.21 -1.55 16 16 C -0.16 -4.37 10.00 22.28 0.22 -4.15 16 17 C 0.13 4.05 7.34 22.60 0.17 4.22 16 18 F -0.14 -4.02 17.27 44.97 0.78 -3.24 16 19 C -0.20 -7.25 6.38 -20.19 -0.13 -7.38 16 20 C -0.23 -7.15 11.14 23.55 0.26 -6.89 16 21 C 0.00 0.12 11.96 66.85 0.80 0.92 16 22 O -0.14 -6.25 7.67 -7.96 -0.06 -6.31 16 23 C 0.09 3.71 6.97 23.22 0.16 3.87 16 24 N -0.49 -27.49 6.63 -178.26 -1.18 -28.68 16 25 H 0.28 12.84 8.29 -92.70 -0.77 12.07 16 26 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 27 H 0.14 4.66 8.06 -2.91 -0.02 4.63 16 28 H 0.14 4.60 6.16 -2.91 -0.02 4.58 16 29 H 0.17 4.31 6.13 -2.91 -0.02 4.29 16 30 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 31 H 0.18 4.36 8.06 -2.91 -0.02 4.34 16 32 H 0.23 5.57 8.06 -2.91 -0.02 5.55 16 Total: -1.00 -67.72 287.00 6.42 -61.30 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 1.18 Total: 20.11 kcal Atomic # 6 Polarization: -49.56 SS G_CDS: 3.48 Total: -46.09 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -0.98 Total: -65.82 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.06 Total: -6.31 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.78 Total: -3.24 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.05 kcal Total: -67.72 6.42 -61.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244929422.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.610 kcal (2) G-P(sol) polarization free energy of solvation -67.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds