Wall clock time and date at job start Tue Mar 31 2020 05:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30753 * 1 3 3 Si 1.86799 * 119.99671 * 2 1 4 4 H 1.48508 * 109.46849 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47409 * 299.99606 * 3 2 1 6 6 H 1.48497 * 109.47548 * 60.00269 * 3 2 1 7 7 C 1.40045 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99903 * 180.02562 * 7 2 1 9 9 C 1.40889 * 120.00195 * 0.02562 * 7 2 1 10 10 C 1.40933 * 119.67305 * 180.02562 * 9 7 2 11 11 C 1.36572 * 119.27114 * 180.02562 * 10 9 7 12 12 C 1.40401 * 118.60148 * 359.97438 * 11 10 9 13 13 C 1.47727 * 120.35748 * 179.97438 * 12 11 10 14 14 C 1.39477 * 120.15216 * 310.02838 * 13 12 11 15 15 C 1.38224 * 120.53381 * 180.02562 * 14 13 12 16 16 C 1.38300 * 120.42234 * 359.97438 * 15 14 13 17 17 F 1.35102 * 120.05883 * 179.97438 * 16 15 14 18 18 C 1.39749 * 119.88014 * 0.02562 * 16 15 14 19 19 C 1.46800 * 134.26050 * 180.02562 * 18 16 15 20 20 C 1.34013 * 106.14745 * 179.97438 * 19 18 16 21 21 O 1.34445 * 110.08110 * 359.97438 * 20 19 18 22 22 C 1.34665 * 110.90011 * 0.02562 * 21 20 19 23 23 C 1.40212 * 119.29045 * 0.26001 * 12 11 10 24 24 N 1.31156 * 120.66917 * 359.48618 * 23 12 11 25 25 H 0.96994 * 119.99935 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.36085 * 359.97438 * 10 9 7 27 27 H 1.07999 * 120.69963 * 180.02562 * 11 10 9 28 28 H 1.08007 * 119.73067 * 359.97438 * 14 13 12 29 29 H 1.08001 * 119.78477 * 179.97438 * 15 14 13 30 30 H 1.07998 * 126.92339 * 359.95255 * 19 18 16 31 31 H 1.08008 * 124.95964 * 180.02562 * 20 19 18 32 32 H 1.07998 * 119.66819 * 179.74679 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7015 1.3464 -0.0006 5 1 1.8828 2.3965 -1.2125 6 1 1.8828 2.3965 1.2125 7 6 2.0077 -1.2128 -0.0005 8 1 3.0878 -1.2128 -0.0001 9 6 1.3033 -2.4330 -0.0016 10 6 2.0150 -3.6494 -0.0016 11 6 1.3239 -4.8274 -0.0032 12 6 -0.0794 -4.7833 -0.0043 13 6 -0.8657 -6.0340 -0.0066 14 6 -0.5811 -7.0387 -0.9312 15 6 -1.3121 -8.2118 -0.9408 16 6 -2.3366 -8.4060 -0.0322 17 9 -3.0467 -9.5552 -0.0485 18 6 -2.6366 -7.4108 0.9019 19 6 -3.6248 -7.2818 1.9798 20 6 -3.4168 -6.0796 2.5342 21 8 -2.4032 -5.4533 1.9116 22 6 -1.9025 -6.2166 0.9216 23 6 -0.7267 -3.5395 -0.0092 24 7 -0.0348 -2.4253 -0.0027 25 1 -0.4850 0.8400 -0.0004 26 1 3.0950 -3.6500 -0.0012 27 1 1.8458 -5.7729 -0.0028 28 1 0.2163 -6.8986 -1.6460 29 1 -1.0817 -8.9816 -1.6623 30 1 -4.3695 -8.0091 2.2677 31 1 -3.9806 -5.6735 3.3612 32 1 -1.8059 -3.4985 -0.0142 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244930984.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:34 Heat of formation + Delta-G solvation = 13.564007 kcal Electronic energy + Delta-G solvation = -20537.565432 eV Core-core repulsion = 17150.783260 eV Total energy + Delta-G solvation = -3386.782172 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.63548 -42.15349 -38.45318 -37.11265 -33.95996 -32.64049 -31.11309 -30.63875 -29.32956 -28.39357 -25.58744 -23.12748 -22.56418 -21.63486 -21.49908 -20.16758 -17.78445 -17.56733 -17.22761 -16.05207 -15.98135 -15.60847 -15.23870 -15.08496 -14.68019 -14.33538 -14.09635 -13.12300 -13.03551 -12.82892 -12.54944 -12.30774 -12.17331 -11.79814 -11.53445 -11.42996 -11.27148 -11.11360 -10.86363 -10.50297 -10.07528 -9.93013 -9.50623 -8.55670 -8.37299 -8.08835 -7.69437 -7.27590 -6.56867 -4.66557 0.99398 1.51631 2.38885 2.67628 2.99656 3.00089 3.03974 3.04403 3.10272 3.81168 3.86635 4.40511 4.56661 4.59359 4.98399 5.08871 5.35351 5.47134 5.59078 5.75518 5.82082 5.98934 6.01920 6.20673 6.22672 6.40485 6.52350 6.57711 6.68290 6.77652 6.90933 6.94315 7.26634 7.36440 7.49075 7.62707 7.88803 8.05780 8.46998 8.75827 9.96290 10.12650 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.032181 B = 0.004071 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.877696 B = 6875.913929 C = 7482.804478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.700 5.700 2 C 0.064 3.936 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.410 4.410 8 H 0.088 0.912 9 C 0.253 3.747 10 C -0.273 4.273 11 C -0.031 4.031 12 C -0.286 4.286 13 C 0.037 3.963 14 C -0.094 4.094 15 C -0.154 4.154 16 C 0.102 3.898 17 F -0.144 7.144 18 C -0.163 4.163 19 C -0.214 4.214 20 C 0.009 3.991 21 O -0.177 6.177 22 C 0.075 3.925 23 C 0.166 3.834 24 N -0.487 5.487 25 H 0.276 0.724 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.140 0.860 29 H 0.135 0.865 30 H 0.155 0.845 31 H 0.206 0.794 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.032 -8.986 1.480 9.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.320 5.320 2 C -0.164 4.164 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.440 4.440 8 H 0.106 0.894 9 C 0.130 3.870 10 C -0.295 4.295 11 C -0.054 4.054 12 C -0.292 4.292 13 C 0.036 3.964 14 C -0.112 4.112 15 C -0.173 4.173 16 C 0.083 3.917 17 F -0.123 7.123 18 C -0.164 4.164 19 C -0.234 4.234 20 C -0.056 4.056 21 O -0.077 6.077 22 C 0.027 3.973 23 C -0.003 4.003 24 N -0.199 5.199 25 H 0.088 0.912 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.158 0.842 29 H 0.152 0.848 30 H 0.172 0.828 31 H 0.223 0.777 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.498 -7.745 1.545 9.088 hybrid contribution 0.417 -0.611 0.096 0.746 sum -4.081 -8.356 1.641 9.443 Atomic orbital electron populations 1.70150 1.07357 1.28220 1.26283 1.26188 0.94998 1.01483 0.93692 0.86207 0.80845 0.80707 0.78788 1.18200 1.19602 1.19610 1.19777 0.94665 0.89584 1.39981 0.89393 1.18675 0.88527 0.91981 0.87833 1.21391 0.98870 0.93500 1.15737 1.20558 0.92441 0.96819 0.95621 1.18866 0.93115 0.91644 1.25560 1.17879 0.92013 0.95192 0.91348 1.20883 1.00325 0.91785 0.98208 1.20853 0.96742 0.99632 1.00092 1.16941 0.94460 0.82218 0.98113 1.91428 1.77422 1.47396 1.96063 1.19774 1.00607 0.95989 1.00054 1.22340 1.02915 0.99227 0.98880 1.23982 0.90408 0.92762 0.98497 1.84101 1.41778 1.42342 1.39440 1.19573 0.97492 0.88829 0.91396 1.22671 0.98414 0.87587 0.91600 1.68809 1.07058 1.26036 1.17965 0.91245 0.88062 0.88407 0.84197 0.84754 0.82762 0.77701 0.86487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.99 11.44 55.55 0.64 -17.35 16 2 C 0.06 1.55 5.50 -17.33 -0.10 1.45 16 3 Si 0.91 17.67 29.56 -169.99 -5.02 12.64 16 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.41 -10.50 9.11 -37.90 -0.35 -10.85 16 8 H 0.09 2.08 7.85 -52.48 -0.41 1.67 16 9 C 0.25 6.69 6.55 -84.98 -0.56 6.13 16 10 C -0.27 -6.42 9.76 -39.16 -0.38 -6.80 16 11 C -0.03 -0.67 9.59 -39.37 -0.38 -1.05 16 12 C -0.29 -6.28 5.51 -104.47 -0.58 -6.85 16 13 C 0.04 0.71 5.50 -104.77 -0.58 0.13 16 14 C -0.09 -1.51 9.51 -39.13 -0.37 -1.88 16 15 C -0.15 -2.26 10.00 -39.56 -0.40 -2.66 16 16 C 0.10 1.63 7.35 -38.99 -0.29 1.35 16 17 F -0.14 -2.23 17.27 2.25 0.04 -2.19 16 18 C -0.16 -2.74 6.38 -105.14 -0.67 -3.41 16 19 C -0.21 -2.99 11.15 -37.61 -0.42 -3.41 16 20 C 0.01 0.12 11.96 29.25 0.35 0.47 16 21 O -0.18 -3.19 10.49 4.33 0.05 -3.14 16 22 C 0.08 1.40 6.91 -38.05 -0.26 1.14 16 23 C 0.17 4.03 10.64 -17.10 -0.18 3.85 16 24 N -0.49 -13.17 7.83 -10.83 -0.08 -13.25 16 25 H 0.28 6.36 8.29 -40.82 -0.34 6.03 16 26 H 0.10 2.18 8.06 -52.48 -0.42 1.75 16 27 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 28 H 0.14 2.02 8.04 -52.48 -0.42 1.60 16 29 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.21 1.77 8.06 -52.48 -0.42 1.34 16 32 H 0.12 2.69 8.05 -52.49 -0.42 2.27 16 LS Contribution 295.82 15.07 4.46 4.46 Total: -1.00 -29.20 295.82 -7.58 -36.78 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -2.50 Total: 4.43 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -5.15 Total: -22.38 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 0.55 Total: -30.61 kcal Atomic # 8 Polarization: -3.19 SS G_CDS: 0.05 Total: -3.14 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.02 Total: 12.64 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.20 -7.58 -36.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244930984.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.343 kcal (2) G-P(sol) polarization free energy of solvation -29.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds