Wall clock time and date at job start Tue Mar 31 2020 05:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43191 * 179.97438 * 2 1 4 4 C 1.39765 * 120.11496 * 321.42099 * 3 2 1 5 5 C 1.37957 * 120.13320 * 180.02562 * 4 3 2 6 6 C 1.38213 * 120.35215 * 0.02955 * 5 4 3 7 7 C 1.39375 * 120.21919 * 359.71333 * 6 5 4 8 8 C 1.48277 * 120.07068 * 180.30214 * 7 6 5 9 9 C 1.39294 * 120.15586 * 64.95799 * 8 7 6 10 10 C 1.38015 * 119.94134 * 179.74802 * 9 8 7 11 11 C 1.38450 * 120.27136 * 0.53435 * 10 9 8 12 12 C 1.38114 * 120.32057 * 359.74236 * 11 10 9 13 13 C 1.38749 * 120.05412 * 359.97438 * 12 11 10 14 14 O 1.35667 * 120.13682 * 180.02562 * 13 12 11 15 15 C 1.34818 * 116.99923 * 354.39098 * 14 13 12 16 16 H 1.08003 * 119.99895 * 5.06712 * 15 14 13 17 17 C 1.38644 * 120.00102 * 185.06608 * 15 14 13 18 18 N 1.31563 * 120.00164 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99897 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47187 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47043 * 120.00462 * 19 17 15 22 22 H 1.48502 * 109.47157 * 240.00052 * 19 17 15 23 23 C 1.39459 * 119.86562 * 0.54093 * 7 6 5 24 24 F 1.35100 * 120.17288 * 179.73888 * 23 7 6 25 25 H 1.08005 * 119.93059 * 0.02945 * 4 3 2 26 26 H 1.07995 * 119.82724 * 180.02562 * 5 4 3 27 27 H 1.07997 * 119.88693 * 180.02562 * 6 5 4 28 28 H 1.07995 * 120.02805 * 0.02562 * 9 8 7 29 29 H 1.07998 * 119.86646 * 180.25676 * 10 9 8 30 30 H 1.07997 * 119.83229 * 179.76296 * 11 10 9 31 31 H 1.07997 * 119.97062 * 179.97438 * 12 11 10 32 32 H 0.96991 * 120.00152 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2696 -0.9442 0.7539 5 6 4.6492 -0.9436 0.7546 6 6 5.3476 -0.0103 0.0119 7 6 4.6628 0.9351 -0.7494 8 6 5.4153 1.9306 -1.5503 9 6 6.2102 1.5147 -2.6159 10 6 6.9046 2.4455 -3.3616 11 6 6.8237 3.7917 -3.0483 12 6 6.0435 4.2157 -1.9905 13 6 5.3350 3.2920 -1.2355 14 8 4.5677 3.7068 -0.1964 15 6 4.6266 5.0150 0.1240 16 1 5.2001 5.6955 -0.4878 17 6 3.9508 5.4867 1.2390 18 7 3.2525 4.6577 1.9845 19 14 4.0319 7.2995 1.6825 20 1 4.8768 8.0141 0.6924 21 1 2.6624 7.8735 1.6713 22 1 4.6213 7.4518 3.0370 23 6 3.2682 0.9462 -0.7526 24 9 2.5981 1.8633 -1.4842 25 1 2.7307 -1.6763 1.3371 26 1 5.1864 -1.6761 1.3386 27 1 6.4275 -0.0170 0.0176 28 1 6.2794 0.4653 -2.8611 29 1 7.5172 2.1221 -4.1901 30 1 7.3731 4.5136 -3.6342 31 1 5.9848 5.2671 -1.7509 32 1 2.7801 4.9876 2.7647 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245068327.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:02 Heat of formation + Delta-G solvation = 10.003492 kcal Electronic energy + Delta-G solvation = -21069.339923 eV Core-core repulsion = 17682.403356 eV Total energy + Delta-G solvation = -3386.936568 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.43194 -39.47825 -38.47768 -36.51463 -36.07650 -32.54992 -32.20749 -30.69152 -29.29196 -28.29902 -25.43897 -23.91140 -22.96794 -21.59960 -20.86804 -18.62411 -18.04988 -17.01777 -16.95007 -16.10878 -15.33340 -15.14442 -14.66062 -14.52085 -14.40203 -13.78164 -13.67445 -13.38641 -13.23011 -13.08932 -12.88961 -12.67762 -12.52279 -11.82585 -11.73929 -11.70016 -11.41021 -11.27508 -10.95581 -10.82245 -10.65826 -10.47811 -9.46312 -8.93136 -8.83051 -8.50970 -8.06587 -7.29895 -6.51682 -4.10396 0.90704 1.33399 2.03210 2.28746 2.86473 3.09110 3.10177 3.14794 3.15875 3.90417 3.92066 4.08112 4.42694 4.47646 4.93346 5.00331 5.09229 5.14882 5.27727 5.39643 5.56642 5.68664 5.84351 6.00368 6.11727 6.18507 6.24235 6.36675 6.50749 6.58641 6.72412 6.93213 6.98483 7.12966 7.26513 7.30618 7.68620 7.69280 7.91142 8.93167 9.59475 10.65027 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.012131 B = 0.007745 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.569202 B = 3614.467406 C = 5109.121929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.265 3.735 3 C -0.070 4.070 4 C -0.053 4.053 5 C -0.136 4.136 6 C -0.054 4.054 7 C -0.039 4.039 8 C -0.151 4.151 9 C -0.051 4.051 10 C -0.218 4.218 11 C -0.064 4.064 12 C -0.233 4.233 13 C 0.171 3.829 14 O -0.162 6.162 15 C -0.394 4.394 16 H 0.094 0.906 17 C 0.043 3.957 18 N -0.853 5.853 19 Si 0.940 3.060 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.275 1.275 23 C 0.177 3.823 24 F -0.116 7.116 25 H 0.136 0.864 26 H 0.136 0.864 27 H 0.137 0.863 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.130 0.870 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.609 -8.542 -3.869 11.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.050 4.050 3 C -0.074 4.074 4 C -0.074 4.074 5 C -0.154 4.154 6 C -0.073 4.073 7 C -0.040 4.040 8 C -0.152 4.152 9 C -0.069 4.069 10 C -0.237 4.237 11 C -0.082 4.082 12 C -0.252 4.252 13 C 0.116 3.884 14 O -0.064 6.064 15 C -0.470 4.470 16 H 0.111 0.889 17 C -0.162 4.162 18 N -0.487 5.487 19 Si 0.764 3.236 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.201 1.201 23 C 0.154 3.846 24 F -0.094 7.094 25 H 0.154 0.846 26 H 0.154 0.846 27 H 0.155 0.845 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.147 0.853 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.484 -8.593 -3.515 10.311 hybrid contribution 0.350 1.352 0.129 1.403 sum 4.834 -7.241 -3.386 9.342 Atomic orbital electron populations 1.81159 1.11890 1.08126 1.08449 1.25367 0.92390 0.93584 0.93667 1.15893 0.84821 1.01300 1.05409 1.20933 0.94288 0.96181 0.95972 1.20942 0.93333 1.00222 1.00953 1.21349 1.00510 0.92425 0.92971 1.18538 0.89924 0.96643 0.98877 1.17532 1.06659 0.89462 1.01558 1.20661 0.94564 0.98561 0.93143 1.20513 1.06470 0.93244 1.03439 1.20854 0.96404 0.95437 0.95516 1.21125 1.04078 1.00286 0.99739 1.19299 0.89172 0.91474 0.88472 1.83955 1.53705 1.27902 1.40834 1.21391 1.33204 0.81164 1.11277 0.88889 1.25283 0.95709 1.00282 0.94961 1.70043 1.28413 1.34939 1.15266 0.85668 0.78554 0.80484 0.78879 1.19021 1.20102 1.20060 1.17747 0.89512 0.86254 0.91045 1.91558 1.80040 1.63832 1.73988 0.84615 0.84624 0.84533 0.86669 0.87293 0.87321 0.85255 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -8.22 18.54 41.84 0.78 -7.44 16 2 C 0.27 4.83 14.97 -22.48 -0.34 4.50 16 3 C -0.07 -1.18 5.74 -106.87 -0.61 -1.79 16 4 C -0.05 -0.69 9.75 -39.11 -0.38 -1.07 16 5 C -0.14 -1.61 10.01 -39.69 -0.40 -2.01 16 6 C -0.05 -0.76 9.72 -39.17 -0.38 -1.14 16 7 C -0.04 -0.71 4.95 -104.89 -0.52 -1.23 16 8 C -0.15 -2.96 5.02 -104.73 -0.53 -3.49 16 9 C -0.05 -0.84 9.73 -39.27 -0.38 -1.23 16 10 C -0.22 -3.48 10.03 -39.59 -0.40 -3.87 16 11 C -0.06 -1.10 10.03 -39.55 -0.40 -1.50 16 12 C -0.23 -4.84 9.16 -39.44 -0.36 -5.20 16 13 C 0.17 3.94 6.45 -38.75 -0.25 3.69 16 14 O -0.16 -4.39 8.96 0.34 0.00 -4.39 16 15 C -0.39 -10.66 9.49 30.88 0.29 -10.37 16 16 H 0.09 2.33 5.21 -52.48 -0.27 2.06 16 17 C 0.04 1.16 5.49 -17.52 -0.10 1.06 16 18 N -0.85 -24.48 13.67 55.48 0.76 -23.72 16 19 Si 0.94 20.23 29.55 -169.99 -5.02 15.21 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 23 C 0.18 3.45 6.93 -38.59 -0.27 3.18 16 24 F -0.12 -2.61 16.21 2.25 0.04 -2.58 16 25 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 26 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 27 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 28 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 31 H 0.13 2.69 5.64 -52.49 -0.30 2.40 16 32 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 303.22 15.07 4.57 4.57 Total: -1.00 -31.28 303.22 -6.13 -37.41 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -2.24 Total: 1.41 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -5.01 Total: -20.48 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 1.53 Total: -31.16 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: 0.00 Total: -4.39 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.28 -6.13 -37.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245068327.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.418 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds