Wall clock time and date at job start Tue Mar 31 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39042 * 120.56348 * 273.01338 * 3 2 1 5 5 C 1.39465 * 119.79936 * 180.30819 * 4 3 2 6 6 C 1.47837 * 119.50924 * 179.71259 * 5 4 3 7 7 C 1.40146 * 120.19100 * 244.97849 * 6 5 4 8 8 O 1.35783 * 120.12656 * 359.97438 * 7 6 5 9 9 C 1.38506 * 119.74901 * 179.97438 * 7 6 5 10 10 C 1.38267 * 120.14081 * 359.97438 * 9 7 6 11 11 C 1.38387 * 120.39864 * 0.02562 * 10 9 7 12 12 C 1.38181 * 120.24538 * 359.72232 * 11 10 9 13 13 F 1.35099 * 120.07896 * 180.28421 * 12 11 10 14 14 C 1.40068 * 120.98287 * 359.68845 * 5 4 3 15 15 C 1.35948 * 121.18687 * 359.97438 * 14 5 4 16 16 C 1.41067 * 120.11799 * 0.02562 * 15 14 5 17 17 C 1.40397 * 120.48433 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00516 * 205.42108 * 17 16 15 19 19 C 1.40281 * 119.99560 * 25.42655 * 17 16 15 20 20 N 1.30648 * 120.00116 * 16.91847 * 19 17 16 21 21 Si 1.86807 * 119.99617 * 196.92252 * 19 17 16 22 22 H 1.48501 * 109.46753 * 265.17618 * 21 19 17 23 23 H 1.48499 * 109.47176 * 25.17920 * 21 19 17 24 24 H 1.48500 * 109.47002 * 145.18141 * 21 19 17 25 25 H 1.08001 * 120.10077 * 0.02562 * 4 3 2 26 26 H 0.96702 * 113.99767 * 89.99961 * 8 7 6 27 27 H 1.08005 * 119.92592 * 179.97438 * 9 7 6 28 28 H 1.08003 * 119.79827 * 180.02562 * 10 9 7 29 29 H 1.07996 * 119.87594 * 179.97438 * 11 10 9 30 30 H 1.08003 * 119.40357 * 180.02562 * 14 5 4 31 31 H 1.08007 * 119.94275 * 180.02562 * 15 14 5 32 32 H 0.97007 * 119.99881 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2751 -0.0620 1.1956 5 6 4.6696 -0.0539 1.1774 6 6 5.4149 -0.1143 2.4527 7 6 6.2070 0.9685 2.8580 8 8 6.2938 2.0782 2.0804 9 6 6.9009 0.9023 4.0549 10 6 6.8123 -0.2273 4.8473 11 6 6.0319 -1.2999 4.4528 12 6 5.3287 -1.2492 3.2644 13 9 4.5633 -2.2959 2.8854 14 6 5.3745 0.0101 -0.0313 15 6 4.7239 0.0658 -1.2237 16 6 3.3137 0.0604 -1.2615 17 6 2.6339 0.1171 -2.4886 18 1 1.6313 0.5160 -2.5326 19 6 3.2571 -0.3447 -3.6575 20 7 4.3078 -1.1168 -3.5764 21 14 2.5844 0.1447 -5.3302 22 1 1.6647 -0.9123 -5.8222 23 1 1.8458 1.4274 -5.2107 24 1 3.7081 0.3078 -6.2872 25 1 2.7460 -0.1121 2.1358 26 1 5.6256 2.7491 2.2765 27 1 7.5126 1.7349 4.3698 28 1 7.3555 -0.2728 5.7797 29 1 5.9691 -2.1782 5.0781 30 1 6.4544 0.0145 -0.0157 31 1 5.2876 0.1142 -2.1437 32 1 4.7385 -1.4364 -4.3847 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245656890.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:06 Heat of formation + Delta-G solvation = -24.939631 kcal Electronic energy + Delta-G solvation = -20635.148880 eV Core-core repulsion = 17246.697065 eV Total energy + Delta-G solvation = -3388.451815 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.42762 -39.44293 -37.57775 -36.21382 -35.13988 -34.29191 -31.55687 -29.94731 -29.53565 -28.86648 -25.66933 -22.61263 -22.53936 -21.95972 -20.64206 -18.37967 -17.78375 -17.21878 -16.40261 -16.06511 -15.56785 -15.35362 -15.13664 -14.43667 -14.25001 -13.91437 -13.53047 -13.37189 -12.88773 -12.69259 -12.17003 -12.04431 -11.91862 -11.79404 -11.65754 -11.46667 -11.32927 -11.21313 -10.83149 -10.76097 -10.39783 -9.91585 -9.84190 -9.51806 -8.53671 -8.44101 -7.77655 -7.54514 -7.20059 -4.77413 1.29056 1.33628 2.20191 2.57684 2.88638 2.92150 2.99422 3.64473 3.66935 3.89147 4.12292 4.27230 4.41348 4.72943 4.99845 5.16159 5.19964 5.38437 5.46222 5.54890 5.89687 5.97364 6.19680 6.25439 6.38436 6.39985 6.54907 6.62848 6.79866 6.96945 6.98871 7.19501 7.45356 7.62366 7.76267 7.83379 7.92543 8.19015 8.36542 8.52242 8.80251 9.67359 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.022002 B = 0.004903 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.306524 B = 5708.893617 C = 6160.130712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.301 3.699 3 C -0.191 4.191 4 C 0.002 3.998 5 C -0.207 4.207 6 C -0.053 4.053 7 C 0.132 3.868 8 O -0.484 6.484 9 C -0.159 4.159 10 C -0.096 4.096 11 C -0.167 4.167 12 C 0.110 3.890 13 F -0.131 7.131 14 C -0.036 4.036 15 C -0.168 4.168 16 C 0.158 3.842 17 C -0.421 4.421 18 H 0.087 0.913 19 C 0.075 3.925 20 N -0.755 5.755 21 Si 0.916 3.084 22 H -0.265 1.265 23 H -0.254 1.254 24 H -0.269 1.269 25 H 0.096 0.904 26 H 0.390 0.610 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.094 0.906 31 H 0.126 0.874 32 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.745 2.751 8.681 11.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.009 4.009 3 C -0.197 4.197 4 C -0.019 4.019 5 C -0.209 4.209 6 C -0.054 4.054 7 C 0.086 3.914 8 O -0.294 6.294 9 C -0.178 4.178 10 C -0.114 4.114 11 C -0.186 4.186 12 C 0.090 3.910 13 F -0.109 7.109 14 C -0.055 4.055 15 C -0.187 4.187 16 C 0.153 3.847 17 C -0.448 4.448 18 H 0.106 0.894 19 C -0.149 4.149 20 N -0.376 5.376 21 Si 0.739 3.261 22 H -0.189 1.189 23 H -0.178 1.178 24 H -0.193 1.193 25 H 0.114 0.886 26 H 0.246 0.754 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.112 0.888 31 H 0.143 0.857 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.600 2.270 8.253 10.809 hybrid contribution -0.222 0.072 -0.591 0.636 sum 6.378 2.341 7.662 10.240 Atomic orbital electron populations 1.81018 1.12695 1.15205 1.09945 1.25751 0.92676 0.91108 0.91318 1.16709 0.83206 1.25393 0.94343 1.20438 0.92351 0.94153 0.94923 1.17399 0.91477 1.21846 0.90143 1.19368 0.97783 0.92636 0.95611 1.18361 0.95982 0.87657 0.89351 1.84767 1.57113 1.27516 1.60012 1.21345 1.02453 0.99739 0.94274 1.20722 0.98587 0.92567 0.99572 1.21030 1.00254 1.00761 0.96569 1.17818 0.93817 0.84869 0.94480 1.91514 1.73095 1.55017 1.91291 1.20342 0.97626 0.95965 0.91613 1.20869 0.93640 1.07362 0.96860 1.18479 0.91603 0.84836 0.89830 1.19806 1.01661 1.31970 0.91372 0.89449 1.26172 0.93921 0.92355 1.02475 1.69726 1.15620 1.19514 1.32744 0.86128 0.79792 0.80775 0.79420 1.18934 1.17788 1.19335 0.88579 0.75400 0.85390 0.85338 0.85163 0.88823 0.85667 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.40 18.54 41.84 0.78 -11.62 16 2 C 0.30 7.16 14.29 -22.47 -0.32 6.84 16 3 C -0.19 -4.43 5.93 -104.27 -0.62 -5.05 16 4 C 0.00 0.05 9.21 -38.83 -0.36 -0.31 16 5 C -0.21 -4.19 4.67 -104.83 -0.49 -4.68 16 6 C -0.05 -0.92 5.29 -104.67 -0.55 -1.47 16 7 C 0.13 1.97 6.68 -38.77 -0.26 1.72 16 8 O -0.48 -6.97 12.70 -19.06 -0.24 -7.21 16 9 C -0.16 -1.95 9.97 -39.47 -0.39 -2.34 16 10 C -0.10 -1.09 10.03 -39.52 -0.40 -1.48 16 11 C -0.17 -2.19 10.01 -39.55 -0.40 -2.58 16 12 C 0.11 1.82 7.23 -39.02 -0.28 1.54 16 13 F -0.13 -2.42 16.65 2.25 0.04 -2.38 16 14 C -0.04 -0.77 9.27 -39.72 -0.37 -1.14 16 15 C -0.17 -3.88 8.62 -39.33 -0.34 -4.22 16 16 C 0.16 3.83 5.73 -104.61 -0.60 3.23 16 17 C -0.42 -10.25 8.55 -38.00 -0.33 -10.57 16 18 H 0.09 2.14 7.38 -52.49 -0.39 1.76 16 19 C 0.07 1.69 5.16 -17.29 -0.09 1.60 16 20 N -0.75 -17.25 10.96 55.57 0.61 -16.64 16 21 Si 0.92 16.99 29.59 -169.99 -5.03 11.96 16 22 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 23 H -0.25 -4.76 7.11 56.52 0.40 -4.36 16 24 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 25 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 26 H 0.39 4.01 9.06 45.56 0.41 4.42 16 27 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 28 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 29 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.09 1.89 8.06 -52.48 -0.42 1.46 16 31 H 0.13 2.93 6.20 -52.48 -0.33 2.61 16 32 H 0.29 5.96 8.29 -40.82 -0.34 5.62 16 LS Contribution 301.62 15.07 4.55 4.55 Total: -1.00 -27.13 301.62 -6.64 -33.77 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -1.55 Total: 6.51 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -5.79 Total: -18.93 kcal Atomic # 7 Polarization: -29.64 SS G_CDS: 1.38 Total: -28.26 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.24 Total: -7.21 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.96 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.13 -6.64 -33.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245656890.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.827 kcal (2) G-P(sol) polarization free energy of solvation -27.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds