Wall clock time and date at job start Tue Mar 31 2020 05:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30522 * 1 3 3 Si 1.86802 * 120.00086 * 2 1 4 4 H 1.48506 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47286 * 300.00568 * 3 2 1 6 6 H 1.48497 * 109.46720 * 60.00484 * 3 2 1 7 7 C 1.40418 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99836 * 179.97438 * 7 2 1 9 9 C 1.40362 * 120.00204 * 359.97438 * 7 2 1 10 10 N 1.33182 * 126.67629 * 179.97438 * 9 7 2 11 11 C 1.34339 * 105.48292 * 180.02562 * 10 9 7 12 12 C 1.48326 * 126.21667 * 180.02562 * 11 10 9 13 13 C 1.39487 * 119.97527 * 179.97438 * 12 11 10 14 14 C 1.37656 * 120.02620 * 179.97438 * 13 12 11 15 15 C 1.39714 * 119.97437 * 359.97438 * 14 13 12 16 16 C 1.47694 * 120.02679 * 180.02562 * 15 14 13 17 17 C 1.35868 * 126.59213 * 180.02562 * 16 15 14 18 18 N 1.34088 * 107.50781 * 180.02562 * 17 16 15 19 19 C 1.30382 * 108.91559 * 359.97438 * 18 17 16 20 20 O 1.33984 * 109.05422 * 359.97438 * 19 18 17 21 21 C 1.39715 * 119.94626 * 0.27199 * 15 14 13 22 22 C 1.37664 * 119.96940 * 359.46750 * 21 15 14 23 23 N 1.31334 * 107.57003 * 0.26333 * 11 10 9 24 24 O 1.21267 * 110.52091 * 359.53863 * 23 11 10 25 25 H 0.96998 * 120.00351 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.98369 * 359.97438 * 13 12 11 27 27 H 1.07998 * 120.01357 * 179.97438 * 14 13 12 28 28 H 1.08000 * 126.24283 * 359.97438 * 17 16 15 29 29 H 1.07995 * 125.47564 * 180.02562 * 19 18 17 30 30 H 1.07998 * 120.01326 * 179.72384 * 21 15 14 31 31 H 1.08000 * 119.98634 * 180.25159 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.6993 1.3463 -0.0006 5 1 1.8804 2.3965 -1.2124 6 1 1.8805 2.3963 1.2126 7 6 2.0073 -1.2161 -0.0005 8 1 3.0874 -1.2160 -0.0010 9 6 1.3055 -2.4317 -0.0005 10 7 1.8329 -3.6546 -0.0015 11 6 0.7860 -4.4966 -0.0016 12 6 0.8531 -5.9783 -0.0021 13 6 -0.3224 -6.7291 -0.0016 14 6 -0.2614 -8.1043 -0.0025 15 6 0.9786 -8.7480 -0.0044 16 6 1.0454 -10.2235 -0.0060 17 6 2.1718 -10.9832 -0.0074 18 7 1.7912 -12.2689 -0.0091 19 6 0.4886 -12.3241 -0.0082 20 8 -0.0020 -11.0773 -0.0054 21 6 2.1554 -7.9949 0.0003 22 6 2.0918 -6.6197 -0.0042 23 7 -0.3076 -3.7694 -0.0065 24 8 -0.0328 -2.5883 -0.0002 25 1 -0.4850 0.8400 0.0004 26 1 -1.2808 -6.2313 -0.0006 27 1 -1.1717 -8.6855 -0.0018 28 1 3.1883 -10.6181 -0.0080 29 1 -0.1004 -13.2293 -0.0088 30 1 3.1145 -8.4913 0.0034 31 1 3.0012 -6.0373 -0.0046 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247386576.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:21 Heat of formation + Delta-G solvation = 95.620698 kcal Electronic energy + Delta-G solvation = -19933.089362 eV Core-core repulsion = 16569.785396 eV Total energy + Delta-G solvation = -3363.303965 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.074 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.39974 -43.14165 -38.93330 -34.92251 -34.22885 -34.14621 -32.31089 -30.93171 -30.45807 -28.41698 -26.60765 -24.25697 -23.41954 -22.12970 -21.81133 -21.06718 -20.49537 -18.31995 -17.98888 -16.70736 -16.26705 -15.95057 -15.68205 -15.47752 -15.03863 -14.48049 -14.21197 -13.77975 -13.37401 -13.24288 -13.12741 -12.88165 -12.01835 -11.75207 -11.55940 -11.55249 -11.45287 -10.99786 -10.71674 -10.60934 -10.55116 -10.23564 -10.01206 -9.45145 -9.10641 -8.88208 -8.61559 -7.72812 -7.18052 -5.13599 0.52458 1.53908 1.79718 2.53066 2.56843 2.71888 2.91526 2.99235 3.20631 3.64703 3.67068 4.04844 4.28835 4.54235 4.70743 4.89577 4.93685 4.96902 5.01333 5.22920 5.31270 5.52307 5.57936 5.76194 5.92484 6.01759 6.12566 6.29113 6.35783 6.50231 6.75634 6.89498 6.96055 7.20307 7.50772 7.76984 7.96607 8.17906 8.34420 9.80815 10.17386 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.062021 B = 0.002924 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.349220 B = 9574.875502 C =10016.380542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.070 3.930 3 Si 0.937 3.063 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.412 4.412 8 H 0.115 0.885 9 C 0.304 3.696 10 N -0.604 5.604 11 C 0.182 3.818 12 C 0.037 3.963 13 C -0.096 4.096 14 C -0.098 4.098 15 C -0.034 4.034 16 C 0.017 3.983 17 C -0.035 4.035 18 N -0.486 5.486 19 C 0.161 3.839 20 O -0.200 6.200 21 C -0.095 4.095 22 C -0.083 4.083 23 N -0.451 5.451 24 O 0.055 5.945 25 H 0.293 0.707 26 H 0.135 0.865 27 H 0.128 0.872 28 H 0.187 0.813 29 H 0.249 0.751 30 H 0.131 0.869 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.832 -12.916 0.009 12.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.156 4.156 3 Si 0.760 3.240 4 H -0.178 1.178 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.450 4.450 8 H 0.133 0.867 9 C 0.114 3.886 10 N -0.348 5.348 11 C -0.089 4.089 12 C 0.035 3.965 13 C -0.116 4.116 14 C -0.117 4.117 15 C -0.036 4.036 16 C -0.036 4.036 17 C -0.174 4.174 18 N -0.214 5.214 19 C -0.064 4.064 20 O -0.086 6.086 21 C -0.113 4.113 22 C -0.103 4.103 23 N -0.178 5.178 24 O 0.004 5.996 25 H 0.104 0.896 26 H 0.153 0.847 27 H 0.146 0.854 28 H 0.204 0.796 29 H 0.265 0.735 30 H 0.149 0.851 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.528 -13.876 0.000 13.886 hybrid contribution -0.208 1.398 0.004 1.413 sum 0.320 -12.478 0.005 12.482 Atomic orbital electron populations 1.69633 1.07812 1.30956 1.30483 1.26217 0.95154 1.02420 0.91771 0.85760 0.80589 0.78691 0.78973 1.17768 1.19284 1.19280 1.18650 0.95146 0.85358 1.45857 0.86672 1.24174 0.79689 0.93939 0.90801 1.72368 1.27524 0.98393 1.36480 1.23260 0.87043 0.94748 1.03819 1.17782 0.93461 0.87820 0.97407 1.21152 0.98608 0.92948 0.98848 1.21062 0.96603 0.94230 0.99762 1.17614 0.94721 0.85396 1.05842 1.21588 0.85067 0.90961 1.05999 1.23304 0.99901 0.87580 1.06626 1.70308 1.11766 1.21856 1.17427 1.28066 0.90194 0.86615 1.01497 1.84482 1.36914 1.17559 1.69618 1.20902 0.96656 0.93370 1.00333 1.21163 0.98112 0.93261 0.97756 1.74610 1.23910 0.91079 1.28182 1.85522 1.25895 1.17634 1.70541 0.89558 0.84691 0.85393 0.79645 0.73491 0.85137 0.83859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.76 12.05 55.57 0.67 -18.09 16 2 C 0.07 1.63 5.50 -17.29 -0.10 1.53 16 3 Si 0.94 16.94 29.56 -169.99 -5.03 11.91 16 4 H -0.25 -4.50 7.11 56.52 0.40 -4.10 16 5 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 6 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 7 C -0.41 -10.50 9.48 -37.96 -0.36 -10.86 16 8 H 0.12 2.75 7.85 -52.48 -0.41 2.34 16 9 C 0.30 8.38 7.80 -16.33 -0.13 8.25 16 10 N -0.60 -15.99 11.28 -11.62 -0.13 -16.12 16 11 C 0.18 4.51 7.77 -156.48 -1.22 3.29 16 12 C 0.04 0.74 5.88 -104.82 -0.62 0.12 16 13 C -0.10 -1.66 9.67 -39.33 -0.38 -2.04 16 14 C -0.10 -1.44 9.71 -39.24 -0.38 -1.82 16 15 C -0.03 -0.48 5.88 -104.93 -0.62 -1.10 16 16 C 0.02 0.22 7.07 -36.57 -0.26 -0.04 16 17 C -0.03 -0.41 11.29 -17.42 -0.20 -0.61 16 18 N -0.49 -5.82 11.27 -14.67 -0.17 -5.99 16 19 C 0.16 1.53 13.22 52.15 0.69 2.22 16 20 O -0.20 -2.36 10.58 4.21 0.04 -2.32 16 21 C -0.09 -1.30 9.56 -39.24 -0.38 -1.67 16 22 C -0.08 -1.41 9.68 -39.33 -0.38 -1.79 16 23 N -0.45 -12.00 11.82 31.48 0.37 -11.62 16 24 O 0.06 1.56 9.71 15.16 0.15 1.71 16 25 H 0.29 6.35 8.29 -40.82 -0.34 6.01 16 26 H 0.14 2.36 7.85 -52.49 -0.41 1.94 16 27 H 0.13 1.61 7.93 -52.49 -0.42 1.19 16 28 H 0.19 1.76 7.29 -52.49 -0.38 1.38 16 29 H 0.25 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.13 1.37 7.02 -52.49 -0.37 1.00 16 31 H 0.14 2.45 7.85 -52.49 -0.41 2.04 16 LS Contribution 292.25 15.07 4.40 4.40 Total: -1.00 -30.94 292.25 -5.96 -36.90 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -1.96 Total: 3.72 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -4.31 Total: -4.51 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.75 Total: -51.83 kcal Atomic # 8 Polarization: -0.80 SS G_CDS: 0.19 Total: -0.61 kcal Atomic # 14 Polarization: 16.94 SS G_CDS: -5.03 Total: 11.91 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.94 -5.96 -36.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247386576.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.523 kcal (2) G-P(sol) polarization free energy of solvation -30.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds