Wall clock time and date at job start Tue Mar 31 2020 05:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30522 * 1 3 3 Si 1.86802 * 120.00086 * 2 1 4 4 H 1.48506 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47286 * 300.00568 * 3 2 1 6 6 H 1.48497 * 109.46720 * 60.00484 * 3 2 1 7 7 C 1.40418 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99836 * 179.97438 * 7 2 1 9 9 C 1.40362 * 120.00204 * 359.97438 * 7 2 1 10 10 N 1.33182 * 126.67629 * 179.97438 * 9 7 2 11 11 C 1.34339 * 105.48292 * 180.02562 * 10 9 7 12 12 C 1.48326 * 126.21667 * 180.02562 * 11 10 9 13 13 C 1.39487 * 119.97527 * 179.97438 * 12 11 10 14 14 C 1.37656 * 120.02620 * 179.97438 * 13 12 11 15 15 C 1.39714 * 119.97437 * 359.97438 * 14 13 12 16 16 C 1.47694 * 120.02679 * 180.02562 * 15 14 13 17 17 C 1.35868 * 126.59213 * 180.02562 * 16 15 14 18 18 N 1.34088 * 107.50781 * 180.02562 * 17 16 15 19 19 C 1.30382 * 108.91559 * 359.97438 * 18 17 16 20 20 O 1.33984 * 109.05422 * 359.97438 * 19 18 17 21 21 C 1.39715 * 119.94626 * 0.27199 * 15 14 13 22 22 C 1.37664 * 119.96940 * 359.46750 * 21 15 14 23 23 N 1.31334 * 107.57003 * 0.26333 * 11 10 9 24 24 O 1.21267 * 110.52091 * 359.53863 * 23 11 10 25 25 H 0.96998 * 120.00351 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.98369 * 359.97438 * 13 12 11 27 27 H 1.07998 * 120.01357 * 179.97438 * 14 13 12 28 28 H 1.08000 * 126.24283 * 359.97438 * 17 16 15 29 29 H 1.07995 * 125.47564 * 180.02562 * 19 18 17 30 30 H 1.07998 * 120.01326 * 179.72384 * 21 15 14 31 31 H 1.08000 * 119.98634 * 180.25159 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.6993 1.3463 -0.0006 5 1 1.8804 2.3965 -1.2124 6 1 1.8805 2.3963 1.2126 7 6 2.0073 -1.2161 -0.0005 8 1 3.0874 -1.2160 -0.0010 9 6 1.3055 -2.4317 -0.0005 10 7 1.8329 -3.6546 -0.0015 11 6 0.7860 -4.4966 -0.0016 12 6 0.8531 -5.9783 -0.0021 13 6 -0.3224 -6.7291 -0.0016 14 6 -0.2614 -8.1043 -0.0025 15 6 0.9786 -8.7480 -0.0044 16 6 1.0454 -10.2235 -0.0060 17 6 2.1718 -10.9832 -0.0074 18 7 1.7912 -12.2689 -0.0091 19 6 0.4886 -12.3241 -0.0082 20 8 -0.0020 -11.0773 -0.0054 21 6 2.1554 -7.9949 0.0003 22 6 2.0918 -6.6197 -0.0042 23 7 -0.3076 -3.7694 -0.0065 24 8 -0.0328 -2.5883 -0.0002 25 1 -0.4850 0.8400 0.0004 26 1 -1.2808 -6.2313 -0.0006 27 1 -1.1717 -8.6855 -0.0018 28 1 3.1883 -10.6181 -0.0080 29 1 -0.1004 -13.2293 -0.0088 30 1 3.1145 -8.4913 0.0034 31 1 3.0012 -6.0373 -0.0046 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247386576.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:20 Heat of formation + Delta-G solvation = 72.725603 kcal Electronic energy + Delta-G solvation = -19934.082167 eV Core-core repulsion = 16569.785396 eV Total energy + Delta-G solvation = -3364.296771 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.074 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.07526 -44.25908 -40.19512 -36.11807 -35.89153 -35.78886 -33.76005 -32.23350 -32.10302 -29.59842 -28.53000 -25.55349 -24.56526 -23.62852 -23.12236 -22.44394 -21.92565 -19.95349 -19.02368 -17.94668 -17.61190 -17.57629 -17.22919 -16.99199 -16.42880 -15.93234 -15.24332 -14.96997 -14.80774 -14.46112 -14.28135 -14.17300 -13.69836 -13.52699 -13.10738 -12.89329 -12.42861 -12.31373 -12.29637 -12.13251 -11.94021 -11.69041 -11.61607 -11.09064 -10.91511 -10.29541 -10.10362 -9.01007 -8.98306 -7.13443 -0.62635 0.30797 0.67995 1.03633 1.41266 1.56023 1.63214 1.69284 1.74042 2.05975 2.14843 2.80265 3.03034 3.03636 3.29596 3.38146 3.56959 3.76296 3.89404 3.99847 4.10129 4.27899 4.48440 4.59995 4.74494 4.79175 4.91977 4.97099 5.05638 5.30937 5.36760 5.42464 5.53136 5.72522 5.83625 6.01473 6.23265 6.41075 6.67350 8.03244 8.19876 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.062021 B = 0.002924 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.349220 B = 9574.875502 C =10016.380542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.028 3.972 3 Si 1.023 2.977 4 H -0.246 1.246 5 H -0.257 1.257 6 H -0.257 1.257 7 C -0.429 4.429 8 H 0.125 0.875 9 C 0.271 3.729 10 N -0.625 5.625 11 C 0.192 3.808 12 C -0.013 4.013 13 C -0.096 4.096 14 C -0.097 4.097 15 C -0.012 4.012 16 C -0.017 4.017 17 C -0.020 4.020 18 N -0.520 5.520 19 C 0.190 3.810 20 O -0.208 6.208 21 C -0.084 4.084 22 C -0.082 4.082 23 N -0.482 5.482 24 O 0.019 5.981 25 H 0.307 0.693 26 H 0.124 0.876 27 H 0.151 0.849 28 H 0.207 0.793 29 H 0.298 0.702 30 H 0.170 0.830 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.973 -14.710 0.009 14.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.194 4.194 3 Si 0.839 3.161 4 H -0.169 1.169 5 H -0.181 1.181 6 H -0.181 1.181 7 C -0.466 4.466 8 H 0.143 0.857 9 C 0.083 3.917 10 N -0.370 5.370 11 C -0.079 4.079 12 C -0.015 4.015 13 C -0.116 4.116 14 C -0.115 4.115 15 C -0.014 4.014 16 C -0.070 4.070 17 C -0.159 4.159 18 N -0.248 5.248 19 C -0.034 4.034 20 O -0.095 6.095 21 C -0.101 4.101 22 C -0.102 4.102 23 N -0.215 5.215 24 O -0.025 6.025 25 H 0.118 0.882 26 H 0.142 0.858 27 H 0.168 0.832 28 H 0.223 0.777 29 H 0.313 0.687 30 H 0.187 0.813 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.662 -15.648 0.001 15.736 hybrid contribution -0.577 1.626 0.004 1.726 sum 1.084 -14.022 0.005 14.064 Atomic orbital electron populations 1.69695 1.09788 1.33037 1.29643 1.27415 0.95923 1.05896 0.90215 0.84547 0.79116 0.72816 0.79580 1.16884 1.18133 1.18118 1.19204 0.95858 0.85895 1.45607 0.85709 1.24811 0.80025 0.95156 0.91748 1.72335 1.28260 0.98495 1.37930 1.24062 0.86091 0.96881 1.00834 1.17924 0.95729 0.85454 1.02360 1.21085 0.97346 0.94077 0.99075 1.21227 0.98126 0.92922 0.99231 1.17785 0.94301 0.86599 1.02700 1.21317 0.85813 0.90337 1.09489 1.23726 1.00601 0.87583 1.03950 1.70395 1.13107 1.21808 1.19471 1.29284 0.90055 0.87007 0.97067 1.84491 1.36929 1.18289 1.69822 1.21177 0.98457 0.91800 0.98702 1.21153 0.96609 0.94690 0.97715 1.74524 1.24766 0.90842 1.31392 1.85449 1.26202 1.18541 1.72357 0.88170 0.85831 0.83164 0.77650 0.68739 0.81260 0.84617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.16 12.05 21.90 0.26 -39.90 16 2 C 0.03 1.30 5.50 85.42 0.47 1.77 16 3 Si 1.02 33.94 29.56 68.60 2.03 35.97 16 4 H -0.25 -7.77 7.11 99.48 0.71 -7.07 16 5 H -0.26 -8.07 7.11 99.48 0.71 -7.36 16 6 H -0.26 -8.06 7.11 99.48 0.71 -7.35 16 7 C -0.43 -22.55 9.48 23.32 0.22 -22.33 16 8 H 0.13 6.10 7.85 -2.91 -0.02 6.07 16 9 C 0.27 15.79 7.80 85.06 0.66 16.45 16 10 N -0.63 -35.05 11.28 -305.03 -3.44 -38.49 16 11 C 0.19 10.17 7.77 137.38 1.07 11.23 16 12 C -0.01 -0.54 5.88 -19.99 -0.12 -0.66 16 13 C -0.10 -3.43 9.67 22.43 0.22 -3.22 16 14 C -0.10 -2.75 9.71 22.49 0.22 -2.53 16 15 C -0.01 -0.32 5.88 -20.07 -0.12 -0.44 16 16 C -0.02 -0.38 7.07 24.22 0.17 -0.21 16 17 C -0.02 -0.40 11.29 83.80 0.95 0.55 16 18 N -0.52 -10.51 11.27 -315.04 -3.55 -14.06 16 19 C 0.19 2.79 13.22 130.46 1.72 4.51 16 20 O -0.21 -4.20 10.58 -7.86 -0.08 -4.28 16 21 C -0.08 -2.14 9.56 22.49 0.21 -1.92 16 22 C -0.08 -2.80 9.68 22.44 0.22 -2.58 16 23 N -0.48 -27.48 11.82 -55.98 -0.66 -28.14 16 24 O 0.02 1.15 9.71 64.33 0.62 1.77 16 25 H 0.31 13.44 8.29 -92.71 -0.77 12.67 16 26 H 0.12 4.60 7.85 -2.91 -0.02 4.58 16 27 H 0.15 3.51 7.93 -2.91 -0.02 3.49 16 28 H 0.21 3.06 7.29 -2.91 -0.02 3.04 16 29 H 0.30 0.78 8.06 -2.91 -0.02 0.76 16 30 H 0.17 2.94 7.02 -2.91 -0.02 2.92 16 31 H 0.14 4.77 7.85 -2.91 -0.02 4.75 16 Total: -1.00 -72.28 292.25 2.27 -70.01 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 1.20 Total: 16.49 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 5.90 Total: 0.63 kcal Atomic # 7 Polarization: -113.20 SS G_CDS: -7.39 Total: -120.59 kcal Atomic # 8 Polarization: -3.05 SS G_CDS: 0.54 Total: -2.51 kcal Atomic # 14 Polarization: 33.94 SS G_CDS: 2.03 Total: 35.97 kcal Total: -72.28 2.27 -70.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247386576.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.731 kcal (2) G-P(sol) polarization free energy of solvation -72.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds