Wall clock time and date at job start Tue Mar 31 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38133 * 120.48050 * 2 1 4 4 N 1.31818 * 120.91319 * 180.23389 * 3 2 1 5 5 C 1.31917 * 122.04569 * 359.47014 * 4 3 2 6 6 Cl 1.73594 * 119.56885 * 180.26976 * 5 4 3 7 7 C 1.38307 * 120.86176 * 0.53080 * 5 4 3 8 8 C 1.39819 * 118.98727 * 359.73908 * 7 5 4 9 9 C 1.48050 * 120.91993 * 179.97438 * 8 7 5 10 10 O 1.21435 * 119.99618 * 186.05995 * 9 8 7 11 11 O 1.34663 * 120.00315 * 6.06228 * 9 8 7 12 12 C 1.45197 * 117.00345 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47244 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47485 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47506 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00164 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00194 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99499 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00313 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46745 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47331 * 120.00056 * 19 17 15 22 22 H 1.48495 * 109.47330 * 240.00564 * 19 17 15 23 23 H 1.09000 * 109.47228 * 96.32333 * 1 2 3 24 24 H 1.09000 * 109.46866 * 216.32186 * 1 2 3 25 25 H 1.08996 * 109.47460 * 336.31997 * 1 2 3 26 26 H 1.07999 * 119.54242 * 359.95212 * 3 2 1 27 27 H 1.08006 * 120.50295 * 179.72111 * 7 5 4 28 28 H 1.08995 * 109.47117 * 299.99908 * 12 11 9 29 29 H 1.09005 * 109.47205 * 60.00176 * 12 11 9 30 30 H 1.08996 * 109.47819 * 300.00101 * 13 12 11 31 31 H 1.09008 * 109.47044 * 60.00306 * 13 12 11 32 32 H 1.09010 * 109.46770 * 300.00756 * 14 13 12 33 33 H 1.08999 * 109.46807 * 59.99821 * 14 13 12 34 34 H 0.97000 * 119.99626 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2077 1.1904 0.0000 4 7 3.5259 1.2004 -0.0046 5 6 4.2343 0.0876 0.0009 6 17 5.9680 0.1757 0.0014 7 6 3.6137 -1.1485 0.0009 8 6 2.2167 -1.2053 0.0005 9 6 1.5082 -2.5053 0.0000 10 8 0.2994 -2.5378 -0.1114 11 8 2.2042 -3.6515 0.1230 12 6 1.4439 -4.8885 0.1150 13 6 2.3985 -6.0749 0.2635 14 6 1.5975 -7.3784 0.2544 15 6 2.5377 -8.5469 0.4013 16 1 3.6004 -8.3769 0.4916 17 6 2.0413 -9.8331 0.4203 18 7 0.7472 -10.0401 0.3098 19 14 3.2067 -11.2816 0.6017 20 1 4.6020 -10.7840 0.7066 21 1 2.8606 -12.0450 1.8275 22 1 3.0843 -12.1670 -0.5841 23 1 -0.3634 -0.1132 -1.0214 24 1 -0.3633 -0.8280 0.6087 25 1 -0.3634 0.9411 0.4127 26 1 1.6681 2.1259 -0.0008 27 1 4.1994 -2.0559 0.0010 28 1 0.7361 -4.8853 0.9438 29 1 0.9009 -4.9752 -0.8262 30 1 3.1061 -6.0780 -0.5656 31 1 2.9419 -5.9885 1.2045 32 1 0.8896 -7.3756 1.0833 33 1 1.0545 -7.4646 -0.6868 34 1 0.3980 -10.9450 0.3228 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263298075.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:21 Heat of formation + Delta-G solvation = -73.694901 kcal Electronic energy + Delta-G solvation = -18801.763068 eV Core-core repulsion = 15532.224521 eV Total energy + Delta-G solvation = -3269.538547 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.21504 -39.84332 -37.10143 -36.68944 -34.11437 -33.81890 -32.67186 -31.68101 -27.98184 -27.13474 -25.40654 -23.52648 -22.63181 -21.29785 -20.42312 -18.46116 -17.52720 -16.76990 -16.53639 -16.23209 -15.65572 -15.41434 -15.10329 -14.50392 -14.23886 -14.12426 -13.40094 -13.33026 -12.92302 -12.29400 -12.25247 -12.17198 -11.93480 -11.86855 -11.61387 -11.03454 -10.83183 -10.73205 -10.59381 -10.53119 -10.38727 -9.99611 -9.81042 -9.56914 -9.22486 -9.20215 -8.43283 -6.07913 -4.11044 0.11164 0.44163 1.41863 2.30002 2.50522 3.20233 3.27532 3.35239 3.39352 3.93639 4.23573 4.29761 4.38688 4.47804 4.53980 5.03227 5.17357 5.26569 5.28369 5.39926 5.46144 5.47825 5.56410 5.84741 5.89836 5.99636 6.33909 6.44982 6.69583 6.89774 7.17498 7.54519 7.62920 7.64607 7.90161 8.30704 8.95360 9.53685 11.03531 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.022255 B = 0.003098 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.827602 B = 9035.498959 C =10258.033553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.071 4.071 3 C 0.111 3.889 4 N -0.455 5.455 5 C 0.156 3.844 6 Cl -0.022 7.022 7 C -0.093 4.093 8 C -0.067 4.067 9 C 0.505 3.495 10 O -0.490 6.490 11 O -0.349 6.349 12 C 0.069 3.931 13 C -0.110 4.110 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.058 0.942 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.085 0.915 24 H 0.098 0.902 25 H 0.070 0.930 26 H 0.175 0.825 27 H 0.164 0.836 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.216 22.996 -0.714 23.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.073 4.073 3 C -0.047 4.047 4 N -0.166 5.166 5 C -0.008 4.008 6 Cl 0.007 6.993 7 C -0.114 4.114 8 C -0.076 4.076 9 C 0.348 3.652 10 O -0.379 6.379 11 O -0.265 6.265 12 C -0.003 4.003 13 C -0.147 4.147 14 C -0.013 4.013 15 C -0.560 4.560 16 H 0.077 0.923 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.209 1.209 23 H 0.103 0.897 24 H 0.116 0.884 25 H 0.089 0.911 26 H 0.192 0.808 27 H 0.182 0.818 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.334 23.568 -0.756 23.815 hybrid contribution 0.236 -1.679 0.062 1.697 sum 3.570 21.889 -0.694 22.189 Atomic orbital electron populations 1.21072 0.88173 1.04104 1.04395 1.21252 0.99004 0.91999 0.95048 1.22640 0.87830 0.97739 0.96492 1.66880 1.08664 1.30768 1.10240 1.21521 0.88114 0.89553 1.01590 1.98426 1.05816 1.98579 1.96480 1.22249 0.93964 0.98815 0.96367 1.19436 0.92905 0.91635 1.03638 1.20769 0.85675 0.84772 0.73949 1.90808 1.14603 1.87764 1.44700 1.86537 1.42404 1.15329 1.82252 1.23632 0.95242 0.78967 1.02488 1.21797 0.98252 0.92662 1.02034 1.19058 0.95386 0.89123 0.97736 1.21198 0.93616 0.90836 1.50359 0.92337 1.25032 0.95142 0.99135 0.95163 1.69974 1.11780 1.21265 1.50298 0.86487 0.81129 0.82407 0.77707 1.19638 1.20954 1.20949 0.89661 0.88393 0.91094 0.80767 0.81839 0.91126 0.91125 0.91992 0.91991 0.96187 0.96182 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 8.84 36.01 0.32 -0.70 16 2 C -0.07 -0.69 5.93 -104.05 -0.62 -1.30 16 3 C 0.11 0.96 10.83 -17.60 -0.19 0.77 16 4 N -0.45 -4.88 10.31 -10.41 -0.11 -4.99 16 5 C 0.16 1.69 7.27 -17.49 -0.13 1.56 16 6 Cl -0.02 -0.22 29.10 -51.86 -1.51 -1.73 16 7 C -0.09 -1.02 9.47 -38.97 -0.37 -1.38 16 8 C -0.07 -0.78 5.91 -104.67 -0.62 -1.40 16 9 C 0.50 7.17 7.86 34.76 0.27 7.45 16 10 O -0.49 -7.64 13.32 -19.22 -0.26 -7.90 16 11 O -0.35 -5.40 9.59 -40.39 -0.39 -5.79 16 12 C 0.07 1.19 5.47 37.16 0.20 1.39 16 13 C -0.11 -2.17 5.53 -26.73 -0.15 -2.32 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 19 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.10 1.04 5.95 -51.93 -0.31 0.73 16 25 H 0.07 0.40 8.05 -51.93 -0.42 -0.02 16 26 H 0.18 0.89 8.06 -52.49 -0.42 0.47 16 27 H 0.16 1.65 7.73 -52.48 -0.41 1.24 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 32 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 315.96 15.07 4.76 4.76 Total: -1.00 -30.43 315.96 -7.66 -38.09 By element: Atomic # 1 Polarization: -0.28 SS G_CDS: -4.06 Total: -4.34 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -1.83 Total: -8.70 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 0.63 Total: -30.65 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.64 Total: -13.69 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.51 Total: -1.73 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.43 -7.66 -38.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263298075.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.606 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds