Wall clock time and date at job start Tue Mar 31 2020 05:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 119.99894 * 2 1 4 4 H 1.48500 * 109.46921 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46896 * 300.00132 * 3 2 1 6 6 H 1.48503 * 109.47077 * 60.00269 * 3 2 1 7 7 C 1.38800 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00013 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99689 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99698 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47100 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99657 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99987 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00143 * 179.97438 * 13 11 10 15 15 H 1.08999 * 109.46877 * 324.99870 * 14 13 11 16 16 C 1.50693 * 109.47304 * 204.99764 * 14 13 11 17 17 N 1.34491 * 126.29313 * 134.99844 * 16 14 13 18 18 C 1.31125 * 105.61926 * 179.97438 * 17 16 14 19 19 O 1.33637 * 106.89730 * 0.02562 * 18 17 16 20 20 N 1.21302 * 109.81216 * 359.73429 * 19 18 17 21 21 C 1.53001 * 109.47370 * 84.99250 * 14 13 11 22 22 C 1.53000 * 117.50223 * 185.00345 * 21 14 13 23 23 C 1.52997 * 117.49889 * 116.37606 * 21 14 13 24 24 H 0.97006 * 120.00096 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99797 * 10 9 7 26 26 H 1.09001 * 109.46892 * 299.99679 * 10 9 7 27 27 H 0.97003 * 119.99970 * 359.97438 * 13 11 10 28 28 H 1.08001 * 126.55399 * 179.97438 * 18 17 16 29 29 H 1.09002 * 115.55911 * 330.69034 * 21 14 13 30 30 H 1.08990 * 117.49990 * 145.01974 * 22 21 14 31 31 H 1.09004 * 117.49237 * 359.97438 * 22 21 14 32 32 H 1.08999 * 117.49685 * 0.02562 * 23 21 14 33 33 H 1.08999 * 117.52022 * 214.97106 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1292 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7911 -5.5022 -0.0011 13 7 2.8441 -6.3431 -0.0008 14 6 2.3304 -7.7151 -0.0008 15 1 1.4145 -7.7601 0.5883 16 6 3.3600 -8.6370 0.6000 17 7 3.1300 -9.6059 1.5039 18 6 4.2986 -10.1510 1.7422 19 8 5.1904 -9.5042 0.9858 20 7 4.6324 -8.6450 0.3362 21 6 2.0342 -8.1487 -1.4379 22 6 1.3767 -9.5151 -1.6422 23 6 2.8488 -9.3121 -2.0068 24 1 -0.4850 0.8401 0.0004 25 1 3.1244 -3.7313 0.8894 26 1 3.1244 -3.7313 -0.8906 27 1 3.8009 -6.1835 -0.0004 28 1 4.5017 -10.9663 2.4207 29 1 1.7542 -7.3481 -2.1225 30 1 0.6643 -9.6133 -2.4612 31 1 1.1556 -10.1052 -0.7528 32 1 3.5955 -9.7689 -1.3572 33 1 3.1048 -9.2774 -3.0658 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263943113.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:55 Heat of formation + Delta-G solvation = 68.278327 kcal Electronic energy + Delta-G solvation = -19292.789304 eV Core-core repulsion = 16063.743636 eV Total energy + Delta-G solvation = -3229.045668 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -46.03769 -39.72987 -37.86166 -35.85878 -34.25631 -32.48481 -32.43199 -29.90268 -27.16678 -25.46629 -24.66665 -23.44825 -22.53825 -21.10186 -20.08583 -18.58060 -18.47372 -17.71097 -16.70878 -16.42729 -16.03343 -15.25994 -14.88250 -14.80374 -14.39215 -13.90714 -13.71361 -13.19780 -12.74053 -12.59057 -12.40595 -12.12658 -11.79410 -11.75581 -11.44310 -11.07381 -11.02951 -10.79634 -10.69032 -10.42935 -10.30663 -9.82299 -9.49543 -9.14338 -9.06701 -8.25521 -6.51456 -6.22684 -3.93406 0.81727 1.81893 2.63705 2.80777 2.96188 3.21321 3.21491 3.29618 3.35370 3.57353 3.66095 3.92198 4.19310 4.47461 4.58461 4.78805 4.81585 5.07326 5.12767 5.23585 5.26822 5.41898 5.44204 5.58234 5.68119 5.69286 5.85594 5.90021 6.00408 6.11696 6.41277 7.55051 7.59640 7.78967 8.34730 8.48111 9.22929 10.84780 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.030717 B = 0.003466 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.338496 B = 8077.436494 C = 8528.733830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.057 6.057 10 C -0.152 4.152 11 C 0.537 3.463 12 O -0.509 6.509 13 N -0.731 5.731 14 C 0.270 3.730 15 H 0.123 0.877 16 C 0.170 3.830 17 N -0.475 5.475 18 C 0.158 3.842 19 O 0.081 5.919 20 N -0.368 5.368 21 C -0.157 4.157 22 C -0.167 4.167 23 C -0.179 4.179 24 H 0.268 0.732 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.403 0.597 28 H 0.265 0.735 29 H 0.124 0.876 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.306 -21.896 0.958 24.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.169 5.831 10 C -0.303 4.303 11 C 0.324 3.676 12 O -0.382 6.382 13 N -0.386 5.386 14 C 0.163 3.837 15 H 0.140 0.860 16 C -0.103 4.103 17 N -0.208 5.208 18 C -0.083 4.083 19 O 0.021 5.979 20 N -0.074 5.074 21 C -0.177 4.177 22 C -0.204 4.204 23 C -0.216 4.216 24 H 0.078 0.922 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.238 0.762 28 H 0.280 0.720 29 H 0.142 0.858 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.048 -21.482 0.440 22.944 hybrid contribution 2.586 1.021 0.245 2.791 sum 10.634 -20.461 0.685 23.069 Atomic orbital electron populations 1.70026 1.05950 1.27378 1.46900 1.24991 0.95028 0.99037 0.94494 0.86112 0.79599 0.81846 0.77915 1.19607 1.20543 1.20544 1.22913 0.94979 0.91600 1.58923 0.90832 1.85394 1.04642 0.96287 1.96731 1.23534 1.06781 0.94814 1.05177 1.20375 0.86429 0.86089 0.74750 1.90723 1.15095 1.85379 1.46975 1.45993 1.10550 1.03903 1.78142 1.18472 0.92619 0.78596 0.94000 0.85979 1.25817 0.91547 0.97636 0.95279 1.71893 1.25321 1.08938 1.14614 1.30555 0.82424 0.99041 0.96247 1.85335 1.37379 1.34307 1.40922 1.74668 1.09546 1.08302 1.14865 1.22713 1.05513 0.93249 0.96266 1.22976 0.95406 0.98348 1.03680 1.23075 0.94407 1.02312 1.01792 0.92212 0.89083 0.88956 0.76223 0.71979 0.85821 0.88061 0.88457 0.89767 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 10 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 11 C 0.54 10.11 7.81 -10.98 -0.09 10.02 16 12 O -0.51 -11.36 15.52 5.56 0.09 -11.27 16 13 N -0.73 -10.69 5.07 -54.94 -0.28 -10.97 16 14 C 0.27 3.65 2.88 -69.09 -0.20 3.45 16 15 H 0.12 1.85 7.58 -51.93 -0.39 1.45 16 16 C 0.17 2.00 5.17 -156.38 -0.81 1.19 16 17 N -0.48 -4.88 11.55 -13.72 -0.16 -5.04 16 18 C 0.16 0.96 13.40 51.98 0.70 1.65 16 19 O 0.08 0.67 11.31 18.12 0.20 0.87 16 20 N -0.37 -4.06 10.80 30.87 0.33 -3.72 16 21 C -0.16 -1.96 5.97 -90.62 -0.54 -2.50 16 22 C -0.17 -1.76 10.11 -26.73 -0.27 -2.03 16 23 C -0.18 -1.90 9.62 -26.73 -0.26 -2.15 16 24 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 26 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 27 H 0.40 5.19 8.36 -40.82 -0.34 4.85 16 28 H 0.26 -0.02 8.06 -52.49 -0.42 -0.44 16 29 H 0.12 1.71 8.14 -51.93 -0.42 1.29 16 30 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 0.92 5.74 -51.93 -0.30 0.62 16 33 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 309.74 15.07 4.67 4.67 Total: -1.00 -35.23 309.74 -6.23 -41.45 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -3.54 Total: 2.97 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -1.05 Total: -6.23 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.63 Total: -45.14 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.29 Total: -10.40 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.23 -6.23 -41.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263943113.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.732 kcal (2) G-P(sol) polarization free energy of solvation -35.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds