Wall clock time and date at job start Tue Mar 31 2020 05:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34777 * 116.99899 * 2 1 4 4 O 1.21539 * 119.99728 * 359.97438 * 3 2 1 5 5 C 1.47237 * 120.00043 * 180.02562 * 3 2 1 6 6 C 1.40041 * 120.62180 * 0.02562 * 5 3 2 7 7 C 1.38304 * 118.37128 * 180.02562 * 6 5 3 8 8 C 1.38426 * 119.53115 * 0.27805 * 7 6 5 9 9 N 1.31810 * 121.24037 * 359.43860 * 8 7 6 10 10 C 1.32514 * 121.77526 * 0.54755 * 9 8 7 11 11 S 1.76204 * 119.84084 * 179.72566 * 10 9 8 12 12 C 1.81004 * 99.99944 * 0.02565 * 11 10 9 13 13 C 1.53000 * 109.46992 * 180.02562 * 12 11 10 14 14 H 1.08992 * 109.47521 * 59.99749 * 13 12 11 15 15 O 1.42899 * 109.46887 * 299.99731 * 13 12 11 16 16 C 1.50700 * 109.46735 * 180.02562 * 13 12 11 17 17 H 1.07994 * 120.00224 * 359.97438 * 16 13 12 18 18 C 1.37881 * 119.99622 * 179.97438 * 16 13 12 19 19 N 1.31515 * 120.00021 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 119.99769 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.47397 * 60.00036 * 20 18 16 22 22 H 1.48501 * 109.46751 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47169 * 299.99471 * 20 18 16 24 24 H 1.09005 * 109.46969 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47195 * 300.00144 * 1 2 3 26 26 H 1.08997 * 109.47269 * 60.00170 * 1 2 3 27 27 H 1.07998 * 120.81075 * 359.97438 * 6 5 3 28 28 H 1.08002 * 120.23131 * 179.97438 * 7 6 5 29 29 H 1.07997 * 119.37809 * 179.70513 * 8 7 6 30 30 H 1.08999 * 109.46790 * 299.99869 * 12 11 10 31 31 H 1.08996 * 109.47050 * 59.99451 * 12 11 10 32 32 H 0.96704 * 114.00078 * 300.00295 * 15 13 12 33 33 H 0.96999 * 119.99744 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4018 2.2201 -0.0005 5 6 3.5342 1.2780 -0.0006 6 6 4.3097 0.1119 -0.0017 7 6 5.6869 0.2385 -0.0016 8 6 6.2561 1.5003 0.0053 9 7 5.5099 2.5868 0.0009 10 6 4.1862 2.5243 0.0004 11 16 3.2384 4.0097 0.0017 12 6 4.5719 5.2336 0.0026 13 6 3.9723 6.6412 0.0045 14 1 3.3575 6.7731 0.8947 15 8 3.1656 6.8167 -1.1619 16 6 5.0827 7.6601 0.0046 17 1 6.1129 7.3361 0.0039 18 6 4.7832 9.0060 0.0057 19 7 3.5286 9.4005 0.0060 20 14 6.1595 10.2690 0.0066 21 1 6.9975 10.0889 -1.2060 22 1 5.5775 11.6352 0.0082 23 1 6.9975 10.0871 1.2190 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 3.8436 -0.8624 -0.0017 28 1 6.3138 -0.6410 -0.0020 29 1 7.3318 1.5962 0.0102 30 1 5.1870 5.0999 0.8925 31 1 5.1871 5.1013 -0.8874 32 1 3.6484 6.7133 -1.9933 33 1 3.3180 10.3473 0.0071 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307288518.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:28 Heat of formation + Delta-G solvation = -96.358867 kcal Electronic energy + Delta-G solvation = -19326.133919 eV Core-core repulsion = 16057.656296 eV Total energy + Delta-G solvation = -3268.477624 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.68191 -39.44486 -36.45253 -35.82713 -32.90293 -32.13865 -31.55077 -29.59029 -27.93583 -25.42876 -24.59942 -23.79316 -21.53314 -20.76010 -18.23208 -17.62152 -17.13172 -16.98773 -16.41386 -16.03668 -15.13594 -14.62788 -14.47641 -14.35222 -14.11869 -13.86273 -13.58703 -13.26251 -13.13779 -12.71521 -12.22931 -11.91917 -11.48559 -11.24655 -10.96675 -10.88430 -10.85946 -10.81212 -10.15982 -10.12883 -9.68725 -9.59921 -9.39722 -9.04270 -8.57798 -8.23005 -7.18286 -6.02251 -4.21715 0.45660 1.07261 1.94092 2.54008 2.57660 2.97262 3.29496 3.34574 3.36903 3.65476 4.38978 4.45090 4.63695 4.71598 4.91487 5.00683 5.07531 5.09371 5.24545 5.30687 5.46442 5.73982 5.89983 5.98892 6.17462 6.25840 6.31181 6.39625 6.82159 7.62834 7.68733 7.73128 7.81149 8.10630 8.79629 9.34427 9.54582 11.01823 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025116 B = 0.004334 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.577023 B = 6459.436298 C = 7475.171889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.360 6.360 3 C 0.503 3.497 4 O -0.470 6.470 5 C -0.187 4.187 6 C 0.000 4.000 7 C -0.215 4.215 8 C 0.156 3.844 9 N -0.492 5.492 10 C 0.158 3.842 11 S 0.052 5.948 12 C -0.156 4.156 13 C 0.244 3.756 14 H 0.063 0.937 15 O -0.559 6.559 16 C -0.568 4.568 17 H 0.059 0.941 18 C 0.080 3.920 19 N -0.858 5.858 20 Si 0.894 3.106 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 H 0.100 0.900 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.147 0.853 28 H 0.140 0.860 29 H 0.162 0.838 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.347 0.653 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.405 -21.472 -0.242 21.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.277 6.277 3 C 0.346 3.654 4 O -0.357 6.357 5 C -0.199 4.199 6 C -0.026 4.026 7 C -0.240 4.240 8 C -0.008 4.008 9 N -0.205 5.205 10 C -0.090 4.090 11 S 0.303 5.697 12 C -0.304 4.304 13 C 0.184 3.816 14 H 0.081 0.919 15 O -0.362 6.362 16 C -0.608 4.608 17 H 0.077 0.923 18 C -0.127 4.127 19 N -0.493 5.493 20 Si 0.721 3.279 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 H 0.118 0.882 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.165 0.835 28 H 0.158 0.842 29 H 0.179 0.821 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.191 0.809 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.366 -19.686 0.223 19.735 hybrid contribution 2.197 -0.471 -0.332 2.271 sum 0.831 -20.157 -0.109 20.175 Atomic orbital electron populations 1.23261 0.75946 1.03460 1.02942 1.86503 1.23559 1.32633 1.85045 1.20775 0.88582 0.81781 0.74284 1.90892 1.65694 1.34897 1.44231 1.19490 0.90403 0.94299 1.15750 1.21742 0.93686 0.97798 0.89404 1.21954 0.95210 0.99271 1.07553 1.23104 1.00483 0.87912 0.89326 1.68424 1.03809 1.32128 1.16138 1.24174 0.93561 0.98365 0.92882 1.87311 1.08120 0.90576 1.83677 1.25042 1.00017 0.99817 1.05556 1.19192 0.90675 0.84972 0.86736 0.91904 1.86595 1.39853 1.94424 1.15305 1.21509 0.92827 0.91100 1.55361 0.92315 1.25046 0.95397 0.98510 0.93715 1.70075 1.17013 1.15684 1.46525 0.86655 0.82151 0.80344 0.78752 1.20071 1.21138 1.20084 0.88190 0.91711 0.91681 0.83514 0.84176 0.82057 0.89537 0.90043 0.80918 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.57 101.05 1.07 1.41 16 2 O -0.36 -4.32 9.89 -40.70 -0.40 -4.72 16 3 C 0.50 7.63 7.88 34.39 0.27 7.90 16 4 O -0.47 -8.53 13.59 -19.30 -0.26 -8.79 16 5 C -0.19 -2.77 5.91 -104.65 -0.62 -3.38 16 6 C 0.00 0.01 9.73 -38.88 -0.38 -0.37 16 7 C -0.22 -2.06 10.08 -39.49 -0.40 -2.46 16 8 C 0.16 1.83 11.16 -17.49 -0.20 1.64 16 9 N -0.49 -7.99 9.13 -11.66 -0.11 -8.10 16 10 C 0.16 2.75 7.02 -16.34 -0.11 2.63 16 11 S 0.05 1.06 18.63 -107.50 -2.00 -0.95 16 12 C -0.16 -3.40 4.47 37.16 0.17 -3.24 16 13 C 0.24 6.36 2.87 -27.88 -0.08 6.28 16 14 H 0.06 1.81 8.14 -51.93 -0.42 1.38 16 15 O -0.56 -14.81 12.32 -35.23 -0.43 -15.25 16 16 C -0.57 -15.78 8.76 -34.44 -0.30 -16.08 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 18 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 19 N -0.86 -25.61 12.84 55.43 0.71 -24.90 16 20 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.15 1.19 7.70 -52.49 -0.40 0.78 16 28 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 29 H 0.16 1.37 8.06 -52.49 -0.42 0.94 16 30 H 0.09 1.88 8.12 -51.92 -0.42 1.46 16 31 H 0.08 1.75 8.12 -51.92 -0.42 1.33 16 32 H 0.35 8.19 9.04 45.56 0.41 8.60 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 308.81 15.07 4.65 4.65 Total: -1.00 -33.65 308.81 -6.45 -40.10 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -2.91 Total: 5.21 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -0.68 Total: -3.52 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.61 Total: -33.00 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -1.10 Total: -28.76 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.00 Total: -0.95 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.65 -6.45 -40.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307288518.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.255 kcal (2) G-P(sol) polarization free energy of solvation -33.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds