Wall clock time and date at job start Tue Mar 31 2020 05:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34777 * 116.99899 * 2 1 4 4 O 1.21539 * 119.99728 * 359.97438 * 3 2 1 5 5 C 1.47237 * 120.00043 * 180.02562 * 3 2 1 6 6 C 1.40041 * 120.62180 * 0.02562 * 5 3 2 7 7 C 1.38304 * 118.37128 * 180.02562 * 6 5 3 8 8 C 1.38426 * 119.53115 * 0.27805 * 7 6 5 9 9 N 1.31810 * 121.24037 * 359.43860 * 8 7 6 10 10 C 1.32514 * 121.77526 * 0.54755 * 9 8 7 11 11 S 1.76204 * 119.84084 * 179.72566 * 10 9 8 12 12 C 1.81004 * 99.99944 * 0.02565 * 11 10 9 13 13 C 1.53000 * 109.46992 * 180.02562 * 12 11 10 14 14 H 1.08992 * 109.47521 * 59.99749 * 13 12 11 15 15 O 1.42899 * 109.46887 * 299.99731 * 13 12 11 16 16 C 1.50700 * 109.46735 * 180.02562 * 13 12 11 17 17 H 1.07994 * 120.00224 * 359.97438 * 16 13 12 18 18 C 1.37881 * 119.99622 * 179.97438 * 16 13 12 19 19 N 1.31515 * 120.00021 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 119.99769 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.47397 * 60.00036 * 20 18 16 22 22 H 1.48501 * 109.46751 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47169 * 299.99471 * 20 18 16 24 24 H 1.09005 * 109.46969 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47195 * 300.00144 * 1 2 3 26 26 H 1.08997 * 109.47269 * 60.00170 * 1 2 3 27 27 H 1.07998 * 120.81075 * 359.97438 * 6 5 3 28 28 H 1.08002 * 120.23131 * 179.97438 * 7 6 5 29 29 H 1.07997 * 119.37809 * 179.70513 * 8 7 6 30 30 H 1.08999 * 109.46790 * 299.99869 * 12 11 10 31 31 H 1.08996 * 109.47050 * 59.99451 * 12 11 10 32 32 H 0.96704 * 114.00078 * 300.00295 * 15 13 12 33 33 H 0.96999 * 119.99744 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4018 2.2201 -0.0005 5 6 3.5342 1.2780 -0.0006 6 6 4.3097 0.1119 -0.0017 7 6 5.6869 0.2385 -0.0016 8 6 6.2561 1.5003 0.0053 9 7 5.5099 2.5868 0.0009 10 6 4.1862 2.5243 0.0004 11 16 3.2384 4.0097 0.0017 12 6 4.5719 5.2336 0.0026 13 6 3.9723 6.6412 0.0045 14 1 3.3575 6.7731 0.8947 15 8 3.1656 6.8167 -1.1619 16 6 5.0827 7.6601 0.0046 17 1 6.1129 7.3361 0.0039 18 6 4.7832 9.0060 0.0057 19 7 3.5286 9.4005 0.0060 20 14 6.1595 10.2690 0.0066 21 1 6.9975 10.0889 -1.2060 22 1 5.5775 11.6352 0.0082 23 1 6.9975 10.0871 1.2190 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 3.8436 -0.8624 -0.0017 28 1 6.3138 -0.6410 -0.0020 29 1 7.3318 1.5962 0.0102 30 1 5.1870 5.0999 0.8925 31 1 5.1871 5.1013 -0.8874 32 1 3.6484 6.7133 -1.9933 33 1 3.3180 10.3473 0.0071 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307288518.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:28 Heat of formation + Delta-G solvation = -121.068013 kcal Electronic energy + Delta-G solvation = -19327.205388 eV Core-core repulsion = 16057.656296 eV Total energy + Delta-G solvation = -3269.549093 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.77138 -40.49949 -37.93465 -37.51692 -34.31129 -33.94557 -32.58333 -31.53762 -28.77644 -27.42998 -25.70382 -24.82284 -23.15719 -22.18145 -19.35658 -19.25993 -18.68227 -18.09144 -17.45871 -17.09441 -16.72383 -16.41227 -16.21277 -15.94156 -15.33944 -15.22749 -15.07843 -14.40827 -14.19262 -13.97198 -13.45250 -13.31301 -13.21718 -12.96590 -12.75512 -12.66954 -12.29885 -12.05137 -11.82582 -11.28806 -11.14390 -10.82956 -10.81306 -10.71425 -10.60722 -10.27622 -8.65287 -8.17117 -6.45293 -0.59854 0.10357 0.57109 1.36546 1.42099 1.43067 1.43711 1.51683 1.61360 2.38656 2.64320 3.08391 3.46892 3.69696 3.76549 3.97187 4.11516 4.23083 4.27320 4.33570 4.35014 4.36454 4.49657 4.73054 4.90655 4.96599 5.02824 5.23639 5.49753 5.53518 5.63416 5.96919 6.61524 6.63954 6.66763 7.26154 7.43874 8.87603 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025116 B = 0.004334 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.577023 B = 6459.436298 C = 7475.171889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.349 6.349 3 C 0.502 3.498 4 O -0.510 6.510 5 C -0.196 4.196 6 C 0.007 3.993 7 C -0.180 4.180 8 C 0.144 3.856 9 N -0.524 5.524 10 C 0.141 3.859 11 S -0.006 6.006 12 C -0.128 4.128 13 C 0.245 3.755 14 H 0.024 0.976 15 O -0.573 6.573 16 C -0.585 4.585 17 H 0.064 0.936 18 C 0.026 3.974 19 N -0.900 5.900 20 Si 0.968 3.032 21 H -0.265 1.265 22 H -0.283 1.283 23 H -0.267 1.267 24 H 0.142 0.858 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.184 0.816 28 H 0.193 0.807 29 H 0.197 0.803 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.357 0.643 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 -24.684 -0.463 24.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.265 6.265 3 C 0.347 3.653 4 O -0.400 6.400 5 C -0.209 4.209 6 C -0.020 4.020 7 C -0.203 4.203 8 C -0.018 4.018 9 N -0.237 5.237 10 C -0.107 4.107 11 S 0.242 5.758 12 C -0.276 4.276 13 C 0.186 3.814 14 H 0.042 0.958 15 O -0.377 6.377 16 C -0.624 4.624 17 H 0.082 0.918 18 C -0.177 4.177 19 N -0.537 5.537 20 Si 0.792 3.208 21 H -0.189 1.189 22 H -0.208 1.208 23 H -0.191 1.191 24 H 0.160 0.840 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.201 0.799 28 H 0.211 0.789 29 H 0.213 0.787 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.202 0.798 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.928 -22.963 -0.001 22.981 hybrid contribution 1.517 0.192 -0.261 1.552 sum 2.445 -22.771 -0.262 22.903 Atomic orbital electron populations 1.23599 0.74196 1.06039 1.02463 1.86490 1.25172 1.30620 1.84244 1.21027 0.88984 0.82062 0.73230 1.90872 1.66530 1.36408 1.46229 1.19675 0.90598 0.94693 1.15884 1.22221 0.94182 0.97659 0.87922 1.22542 0.95014 1.00023 1.02761 1.23825 1.01834 0.87798 0.88361 1.68302 1.03528 1.34836 1.17046 1.23683 0.94173 0.97004 0.95881 1.87368 1.08734 0.93051 1.86659 1.24454 0.99975 0.98204 1.04993 1.18953 0.89633 0.87557 0.85270 0.95804 1.86534 1.40499 1.94742 1.15960 1.21884 0.93397 0.92014 1.55085 0.91789 1.25979 0.97942 1.00763 0.93015 1.70228 1.19460 1.16148 1.47817 0.85482 0.78797 0.77242 0.79278 1.18937 1.20806 1.19142 0.83974 0.92265 0.92250 0.79877 0.78936 0.78658 0.90191 0.90138 0.79772 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.57 113.37 1.20 1.69 16 2 O -0.35 -7.71 9.89 -56.88 -0.56 -8.27 16 3 C 0.50 15.10 7.88 70.19 0.55 15.66 16 4 O -0.51 -19.33 13.59 19.71 0.27 -19.06 16 5 C -0.20 -5.57 5.91 -19.88 -0.12 -5.68 16 6 C 0.01 0.11 9.73 22.72 0.22 0.34 16 7 C -0.18 -2.46 10.08 22.33 0.23 -2.24 16 8 C 0.14 2.88 11.16 84.74 0.95 3.82 16 9 N -0.52 -16.53 9.13 -190.80 -1.74 -18.27 16 10 C 0.14 4.91 7.02 85.18 0.60 5.51 16 11 S -0.01 -0.27 18.63 -56.49 -1.05 -1.32 16 12 C -0.13 -5.89 4.47 71.98 0.32 -5.57 16 13 C 0.24 13.52 2.87 29.85 0.09 13.61 16 14 H 0.02 1.49 8.14 -2.39 -0.02 1.47 16 15 O -0.57 -32.08 12.32 -148.98 -1.84 -33.92 16 16 C -0.58 -33.44 8.76 25.60 0.22 -33.21 16 17 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 18 C 0.03 1.49 5.40 84.66 0.46 1.95 16 19 N -0.90 -55.53 12.84 21.45 0.28 -55.25 16 20 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 21 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 H 0.14 1.13 8.14 -2.38 -0.02 1.11 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.18 1.90 7.70 -2.91 -0.02 1.88 16 28 H 0.19 0.74 8.06 -2.91 -0.02 0.72 16 29 H 0.20 2.43 8.06 -2.91 -0.02 2.40 16 30 H 0.08 3.67 8.12 -2.40 -0.02 3.65 16 31 H 0.08 3.62 8.12 -2.40 -0.02 3.60 16 32 H 0.36 17.75 9.04 -74.05 -0.67 17.09 16 33 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -78.34 308.81 2.56 -75.77 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.47 Total: 18.28 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 4.71 Total: -4.13 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -1.47 Total: -73.53 kcal Atomic # 8 Polarization: -59.12 SS G_CDS: -2.13 Total: -61.25 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: -0.27 SS G_CDS: -1.05 Total: -1.32 kcal Total: -78.34 2.56 -75.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307288518.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.294 kcal (2) G-P(sol) polarization free energy of solvation -78.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds