Wall clock time and date at job start Tue Mar 31 2020 05:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99968 * 2 1 4 4 H 1.48503 * 109.46930 * 269.99509 * 3 2 1 5 5 H 1.48494 * 109.47133 * 29.99647 * 3 2 1 6 6 H 1.48501 * 109.47378 * 149.99905 * 3 2 1 7 7 C 1.37873 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00341 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00042 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47119 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47229 * 179.97438 * 10 9 7 12 12 S 1.81391 * 109.47209 * 180.02562 * 11 10 9 13 13 O 1.42100 * 110.54597 * 68.37652 * 12 11 10 14 14 O 1.42107 * 110.54412 * 291.62342 * 12 11 10 15 15 N 1.65600 * 104.45184 * 180.02562 * 12 11 10 16 16 C 1.47425 * 125.65067 * 89.99607 * 15 12 11 17 17 C 1.54908 * 104.92961 * 204.15751 * 16 15 12 18 18 H 1.09008 * 111.00494 * 81.01141 * 17 16 15 19 19 F 1.39897 * 111.00628 * 204.82353 * 17 16 15 20 20 C 1.55154 * 101.58289 * 322.93718 * 17 16 15 21 21 H 1.09002 * 110.72290 * 153.86663 * 20 17 16 22 22 F 1.39904 * 110.71967 * 277.13861 * 20 17 16 23 23 C 1.47290 * 125.79191 * 270.00009 * 15 12 11 24 24 H 0.97004 * 120.00356 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47172 * 60.00050 * 9 7 2 26 26 H 1.08997 * 109.47022 * 299.99050 * 9 7 2 27 27 H 1.09005 * 109.46881 * 60.00264 * 10 9 7 28 28 H 1.08991 * 109.47381 * 300.00495 * 10 9 7 29 29 H 1.08998 * 109.47156 * 60.00277 * 11 10 9 30 30 H 1.09003 * 109.46902 * 300.00385 * 11 10 9 31 31 H 1.09002 * 110.36696 * 85.26398 * 16 15 12 32 32 H 1.08995 * 110.36608 * 323.05234 * 16 15 12 33 33 H 1.09004 * 109.85762 * 59.49720 * 23 15 12 34 34 H 1.08995 * 110.00297 * 298.42667 * 23 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 16 2.6590 -6.3658 0.0019 13 8 3.3557 -6.4256 1.2390 14 8 3.3559 -6.4269 -1.2350 15 7 1.7087 -7.7220 0.0019 16 6 1.2160 -8.4259 -1.1961 17 6 -0.0561 -9.1737 -0.7247 18 1 -0.9160 -8.5042 -0.6993 19 9 -0.3133 -10.2853 -1.5342 20 6 0.3516 -9.6099 0.7073 21 1 -0.5286 -9.7325 1.3385 22 9 1.1039 -10.7889 0.6703 23 6 1.2139 -8.4272 1.1966 24 1 -0.4851 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8904 27 1 2.8719 -3.6044 0.8906 28 1 2.8719 -3.6044 -0.8893 29 1 0.8534 -5.0451 -0.8886 30 1 0.8539 -5.0445 0.8914 31 1 1.9626 -9.1353 -1.5532 32 1 0.9672 -7.7112 -1.9805 33 1 0.6082 -7.7518 1.8009 34 1 2.0532 -8.7987 1.7846 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001309517667.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:44 Heat of formation + Delta-G solvation = -178.526520 kcal Electronic energy + Delta-G solvation = -20487.252732 eV Core-core repulsion = 16796.815617 eV Total energy + Delta-G solvation = -3690.437116 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.084 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.61727 -47.52434 -38.09654 -37.07313 -35.90278 -34.75825 -32.25389 -30.54227 -29.30203 -27.89360 -23.92272 -23.18249 -21.88105 -20.65827 -19.20561 -18.12100 -17.81182 -16.71407 -16.30903 -16.16565 -15.95111 -15.83909 -15.27631 -15.06074 -14.55113 -14.43319 -14.15577 -13.83370 -13.53306 -12.89968 -12.66839 -12.51086 -12.35538 -12.09030 -11.99817 -11.89053 -11.64217 -11.33393 -11.32292 -10.96763 -10.92489 -10.91173 -10.49562 -10.03055 -9.68135 -9.34557 -9.10412 -8.45842 -6.10856 -4.14180 0.19876 2.47581 3.27320 3.33690 3.36746 3.37592 3.58210 3.75506 3.86840 4.16724 4.26042 4.35612 4.38290 4.56230 4.82633 4.91266 5.01887 5.04344 5.16669 5.25836 5.39332 5.48483 5.63400 5.78147 5.87988 6.18805 6.34816 6.78478 7.49890 7.59192 7.86714 8.26748 8.91922 9.51016 11.00321 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.034118 B = 0.003561 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.478249 B = 7860.555964 C = 8159.729216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.107 4.107 11 C -0.606 4.606 12 S 2.612 3.388 13 O -0.951 6.951 14 O -0.951 6.951 15 N -1.016 6.016 16 C 0.098 3.902 17 C 0.056 3.944 18 H 0.123 0.877 19 F -0.189 7.189 20 C 0.060 3.940 21 H 0.119 0.881 22 F -0.191 7.191 23 C 0.094 3.906 24 H 0.262 0.738 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.901 -19.057 0.883 19.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.007 4.007 10 C -0.146 4.146 11 C -0.738 4.738 12 S 2.711 3.289 13 O -0.942 6.942 14 O -0.941 6.941 15 N -0.852 5.852 16 C -0.028 4.028 17 C 0.018 3.982 18 H 0.141 0.859 19 F -0.170 7.170 20 C 0.022 3.978 21 H 0.136 0.864 22 F -0.172 7.172 23 C -0.031 4.031 24 H 0.071 0.929 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.014 -18.970 0.874 19.097 hybrid contribution -0.328 1.027 -0.058 1.080 sum -2.342 -17.943 0.816 18.114 Atomic orbital electron populations 1.69950 1.06108 1.26851 1.50513 1.25012 0.94889 0.99399 0.95009 0.86546 0.79886 0.83104 0.78231 1.20538 1.21145 1.19715 1.21245 0.93277 0.90852 1.51220 0.92339 1.19066 0.93494 0.90413 0.97752 1.21531 0.99474 0.91525 1.02106 1.30581 1.16325 1.15556 1.11323 1.05252 0.75298 0.74110 0.74281 1.93577 1.69715 1.85589 1.45286 1.93585 1.69682 1.85571 1.45284 1.58930 1.70896 1.43742 1.11676 1.22473 0.94789 0.97480 0.88086 1.23393 1.00050 0.86003 0.88746 0.85948 1.92862 1.95299 1.54471 1.74329 1.23152 0.94624 0.82247 0.97805 0.86371 1.92883 1.78193 1.48727 1.97361 1.22384 0.99203 0.93437 0.88122 0.92855 0.96097 0.96084 0.91469 0.91462 0.85304 0.85296 0.89439 0.88488 0.88863 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.05 13.29 55.43 0.74 -25.32 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.53 -14.54 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 10 C -0.11 -2.06 5.16 -26.73 -0.14 -2.20 16 11 C -0.61 -8.48 6.18 37.16 0.23 -8.25 16 12 S 2.61 36.33 5.65 -107.50 -0.61 35.73 16 13 O -0.95 -15.87 17.61 -57.54 -1.01 -16.88 16 14 O -0.95 -16.06 17.60 -57.54 -1.01 -17.07 16 15 N -1.02 -10.61 3.63 -111.22 -0.40 -11.02 16 16 C 0.10 0.90 6.69 -2.53 -0.02 0.88 16 17 C 0.06 0.41 4.75 -24.58 -0.12 0.30 16 18 H 0.12 0.55 8.14 -51.92 -0.42 0.13 16 19 F -0.19 -1.84 16.96 2.25 0.04 -1.80 16 20 C 0.06 0.43 4.65 -24.90 -0.12 0.31 16 21 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 22 F -0.19 -1.98 16.92 2.25 0.04 -1.94 16 23 C 0.09 0.77 6.73 -2.92 -0.02 0.75 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.13 1.57 8.14 -51.93 -0.42 1.14 16 30 H 0.13 1.55 8.14 -51.92 -0.42 1.13 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.84 8.11 -51.93 -0.42 0.42 16 LS Contribution 309.96 15.07 4.67 4.67 Total: -1.00 -35.14 309.96 -7.92 -43.06 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -4.61 Total: -4.72 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -0.73 Total: -20.90 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.33 Total: -36.33 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -2.03 Total: -33.95 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.08 Total: -3.74 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 36.33 SS G_CDS: -0.61 Total: 35.73 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.14 -7.92 -43.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309517667.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.471 kcal (2) G-P(sol) polarization free energy of solvation -35.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds