Wall clock time and date at job start Tue Mar 31 2020 05:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42100 * 108.58086 * 2 1 4 4 O 1.42095 * 108.57824 * 228.96869 * 2 1 3 5 5 C 1.81406 * 101.91873 * 114.48341 * 2 1 3 6 6 C 1.50701 * 109.46973 * 179.97438 * 5 2 1 7 7 C 1.38329 * 119.91626 * 270.29948 * 6 5 2 8 8 C 1.38061 * 120.07922 * 180.25759 * 7 6 5 9 9 C 1.39030 * 119.91750 * 359.46638 * 8 7 6 10 10 N 1.39533 * 120.08362 * 180.28037 * 9 8 7 11 11 C 1.34776 * 120.00186 * 33.38585 * 10 9 8 12 12 O 1.21746 * 119.99761 * 5.28142 * 11 10 9 13 13 C 1.46168 * 120.00181 * 185.27799 * 11 10 9 14 14 H 1.08001 * 120.00066 * 0.02562 * 13 11 10 15 15 C 1.40128 * 120.00280 * 180.02562 * 13 11 10 16 16 N 1.30640 * 119.99700 * 0.02562 * 15 13 11 17 17 Si 1.86793 * 120.00302 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47298 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47398 * 120.00365 * 17 15 13 20 20 H 1.48508 * 109.47035 * 240.00252 * 17 15 13 21 21 C 1.39031 * 119.83394 * 0.25275 * 9 8 7 22 22 C 1.38061 * 119.91447 * 0.02562 * 21 9 8 23 23 H 1.09006 * 109.47000 * 305.52032 * 1 2 3 24 24 H 1.09002 * 109.47011 * 65.51021 * 1 2 3 25 25 H 1.08993 * 109.47406 * 185.51928 * 1 2 3 26 26 H 1.09000 * 109.47062 * 60.00143 * 5 2 1 27 27 H 1.08995 * 109.47051 * 299.99786 * 5 2 1 28 28 H 1.07995 * 119.96014 * 359.97438 * 7 6 5 29 29 H 1.08001 * 120.04434 * 179.75031 * 8 7 6 30 30 H 0.97003 * 120.00145 * 213.39508 * 10 9 8 31 31 H 0.97003 * 119.99783 * 179.97438 * 16 15 13 32 32 H 1.07996 * 120.03934 * 180.02562 * 21 9 8 33 33 H 1.07992 * 119.95411 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0160 5 6 2.1887 -0.7356 1.6154 6 6 3.6826 -0.8182 1.7953 7 6 4.3668 -1.9447 1.3753 8 6 5.7347 -2.0262 1.5433 9 6 6.4260 -0.9697 2.1254 10 7 7.8093 -1.0460 2.2916 11 6 8.5613 -1.7054 1.3882 12 8 8.0478 -2.1517 0.3785 13 6 9.9932 -1.8848 1.6206 14 1 10.4486 -1.4893 2.5165 15 6 10.7751 -2.5699 0.6810 16 7 10.2243 -3.0480 -0.4029 17 14 12.6048 -2.7998 0.9784 18 1 12.9796 -2.1692 2.2695 19 1 12.9204 -4.2501 1.0252 20 1 13.3693 -2.1622 -0.1237 21 6 5.7356 0.1632 2.5411 22 6 4.3669 0.2350 2.3749 23 1 -0.3633 0.5971 0.8365 24 1 -0.3633 0.4260 -0.9352 25 1 -0.3634 -1.0228 0.0988 26 1 1.7610 -1.7369 1.6666 27 1 1.7610 -0.1169 2.4043 28 1 3.8297 -2.7633 0.9195 29 1 6.2678 -2.9077 1.2188 30 1 8.2298 -0.6245 3.0575 31 1 10.7657 -3.5219 -1.0534 32 1 6.2693 0.9860 2.9933 33 1 3.8300 1.1146 2.6979 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320222652.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:52 Heat of formation + Delta-G solvation = -81.953118 kcal Electronic energy + Delta-G solvation = -19445.092319 eV Core-core repulsion = 16177.239375 eV Total energy + Delta-G solvation = -3267.852944 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.34623 -37.21107 -36.91321 -35.92388 -33.96144 -32.55575 -31.22330 -30.42443 -29.75708 -27.17257 -25.51062 -22.44053 -21.53818 -19.75825 -18.84921 -17.61640 -16.68736 -16.58744 -16.12668 -16.05503 -15.53945 -14.86211 -14.70950 -14.04494 -13.62282 -13.41370 -13.40348 -13.09553 -12.95909 -12.62123 -12.40309 -12.09071 -11.99048 -11.91524 -11.54727 -11.29346 -11.17894 -11.08256 -10.75149 -10.71698 -10.53790 -10.32114 -9.26894 -8.89824 -8.48320 -7.78457 -7.11204 -6.36691 -4.84421 -0.12154 1.84247 1.94056 2.74572 3.05549 3.13851 3.18336 3.65735 3.92199 3.97304 4.17201 4.49827 4.54250 4.54758 4.58678 4.65969 4.94206 5.35247 5.39802 5.43773 5.46175 5.62428 5.89265 6.12033 6.24934 6.50578 6.74169 6.95999 7.03476 7.25942 7.33134 7.69832 8.00663 8.13102 8.82885 9.17043 10.35399 10.54293 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.038931 B = 0.003614 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.051519 B = 7745.783659 C = 8078.256296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.665 4.665 2 S 2.408 3.592 3 O -0.936 6.936 4 O -0.932 6.932 5 C -0.540 4.540 6 C -0.152 4.152 7 C -0.077 4.077 8 C -0.131 4.131 9 C 0.209 3.791 10 N -0.698 5.698 11 C 0.540 3.460 12 O -0.556 6.556 13 C -0.537 4.537 14 H 0.073 0.927 15 C 0.085 3.915 16 N -0.757 5.757 17 Si 0.914 3.086 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.179 4.179 22 C -0.077 4.077 23 H 0.125 0.875 24 H 0.125 0.875 25 H 0.125 0.875 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.123 0.877 29 H 0.143 0.857 30 H 0.395 0.605 31 H 0.272 0.728 32 H 0.122 0.878 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.500 4.324 6.518 18.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.813 4.813 2 S 2.591 3.409 3 O -0.934 6.934 4 O -0.929 6.929 5 C -0.669 4.669 6 C -0.156 4.156 7 C -0.097 4.097 8 C -0.152 4.152 9 C 0.108 3.892 10 N -0.341 5.341 11 C 0.347 3.653 12 O -0.438 6.438 13 C -0.573 4.573 14 H 0.091 0.909 15 C -0.136 4.136 16 N -0.385 5.385 17 Si 0.738 3.262 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.200 4.200 22 C -0.097 4.097 23 H 0.143 0.857 24 H 0.144 0.856 25 H 0.144 0.856 26 H 0.152 0.848 27 H 0.151 0.849 28 H 0.141 0.859 29 H 0.161 0.839 30 H 0.228 0.772 31 H 0.083 0.917 32 H 0.140 0.860 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.201 4.162 4.903 17.431 hybrid contribution 0.417 -0.113 1.097 1.179 sum -15.784 4.048 6.000 17.365 Atomic orbital electron populations 1.30379 1.28361 1.11159 1.11357 1.08543 0.77692 0.76223 0.78436 1.93581 1.78610 1.34637 1.86524 1.93612 1.78435 1.66785 1.54038 1.29070 1.02334 1.13568 1.21900 1.18564 0.90547 0.97704 1.08738 1.20916 0.94364 0.96792 0.97643 1.21358 0.93039 0.99542 1.01259 1.18124 0.85138 0.92109 0.93823 1.44272 1.03239 1.58025 1.28537 1.18446 0.87467 0.77856 0.81574 1.90662 1.73625 1.51731 1.27737 1.20890 0.91249 1.37787 1.07375 0.90882 1.25764 1.00383 0.93480 0.93995 1.69997 1.36645 1.25027 1.06812 0.86207 0.82108 0.78592 0.79269 1.18643 1.19977 1.19973 1.20869 0.94418 0.97091 1.07668 1.20683 0.93971 0.97186 0.97817 0.85657 0.85607 0.85582 0.84760 0.84868 0.85924 0.83894 0.77191 0.91688 0.85963 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.92 10.62 101.05 1.07 -2.84 16 2 S 2.41 26.79 5.34 -107.50 -0.57 26.22 16 3 O -0.94 -14.02 18.10 -57.83 -1.05 -15.06 16 4 O -0.93 -14.77 18.10 -57.83 -1.05 -15.82 16 5 C -0.54 -5.21 5.93 36.01 0.21 -5.00 16 6 C -0.15 -2.32 5.14 -104.55 -0.54 -2.85 16 7 C -0.08 -1.37 9.69 -39.61 -0.38 -1.75 16 8 C -0.13 -2.81 8.65 -39.35 -0.34 -3.15 16 9 C 0.21 4.38 6.28 -83.77 -0.53 3.86 16 10 N -0.70 -15.61 5.32 -11.20 -0.06 -15.67 16 11 C 0.54 14.94 7.47 -13.08 -0.10 14.84 16 12 O -0.56 -17.43 12.70 5.15 0.07 -17.36 16 13 C -0.54 -14.58 9.54 -35.69 -0.34 -14.92 16 14 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 15 C 0.09 2.29 5.50 -17.35 -0.10 2.20 16 16 N -0.76 -22.00 11.82 55.55 0.66 -21.34 16 17 Si 0.91 19.44 29.56 -169.99 -5.02 14.41 16 18 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 C -0.18 -3.11 9.97 -39.35 -0.39 -3.51 16 22 C -0.08 -1.19 9.69 -39.61 -0.38 -1.57 16 23 H 0.12 0.46 8.14 -51.92 -0.42 0.03 16 24 H 0.13 0.71 8.14 -51.92 -0.42 0.29 16 25 H 0.13 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.13 0.91 8.09 -51.92 -0.42 0.49 16 27 H 0.13 0.82 8.08 -51.93 -0.42 0.40 16 28 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 29 H 0.14 3.47 6.42 -52.49 -0.34 3.13 16 30 H 0.39 7.43 8.79 -40.82 -0.36 7.07 16 31 H 0.27 7.14 8.29 -40.82 -0.34 6.81 16 32 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 33 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 306.86 15.07 4.62 4.62 Total: -1.00 -38.88 306.86 -7.83 -46.72 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -3.62 Total: 7.98 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -1.81 Total: -14.70 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.60 Total: -37.01 kcal Atomic # 8 Polarization: -46.22 SS G_CDS: -2.03 Total: -48.24 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.41 kcal Atomic # 16 Polarization: 26.79 SS G_CDS: -0.57 Total: 26.22 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -38.88 -7.83 -46.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320222652.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.235 kcal (2) G-P(sol) polarization free energy of solvation -38.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds