Wall clock time and date at job start Tue Mar 31 2020 06:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33526 * 125.97051 * 2 1 4 4 N 1.31912 * 114.56807 * 179.97438 * 3 2 1 5 5 C 1.29686 * 116.92159 * 0.02562 * 4 3 2 6 6 N 1.38754 * 124.94068 * 179.97438 * 5 4 3 7 7 C 1.34773 * 120.00127 * 359.97332 * 6 5 4 8 8 O 1.21391 * 120.00002 * 359.97438 * 7 6 5 9 9 C 1.49304 * 120.00156 * 180.02562 * 7 6 5 10 10 O 1.21368 * 119.99832 * 0.02562 * 9 7 6 11 11 N 1.34782 * 120.00224 * 179.97438 * 9 7 6 12 12 C 1.46496 * 120.00129 * 180.02562 * 11 9 7 13 13 H 1.09002 * 109.47402 * 34.99524 * 12 11 9 14 14 C 1.53003 * 109.47024 * 275.00203 * 12 11 9 15 15 C 1.50700 * 109.47420 * 155.00205 * 12 11 9 16 16 H 1.08007 * 119.99687 * 359.97438 * 15 12 11 17 17 C 1.37872 * 120.00125 * 180.02562 * 15 12 11 18 18 N 1.31513 * 120.00279 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 119.99949 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47342 * 59.99347 * 19 17 15 21 21 H 1.48501 * 109.46859 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46605 * 299.99403 * 19 17 15 23 23 S 1.70971 * 110.11525 * 359.75835 * 5 4 3 24 24 H 1.09002 * 109.47152 * 90.00130 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00230 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00211 * 1 2 3 27 27 H 1.08005 * 122.72109 * 359.95837 * 3 2 1 28 28 H 0.96999 * 119.99573 * 179.97438 * 6 5 4 29 29 H 0.96996 * 119.99701 * 0.02562 * 11 9 7 30 30 H 1.08997 * 109.47299 * 60.00015 * 14 12 11 31 31 H 1.08994 * 109.47142 * 180.02562 * 14 12 11 32 32 H 1.09007 * 109.46930 * 299.99845 * 14 12 11 33 33 H 0.96993 * 120.00489 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2913 1.0807 0.0000 4 7 3.5844 0.8199 0.0005 5 6 3.9314 -0.4297 0.0005 6 7 5.2400 -0.8911 0.0005 7 6 6.2636 -0.0144 0.0000 8 8 6.0408 1.1789 -0.0009 9 6 7.6717 -0.5109 -0.0006 10 8 7.8945 -1.7039 -0.0011 11 7 8.6954 0.3658 -0.0016 12 6 10.0770 -0.1213 -0.0027 13 1 10.1393 -1.0362 -0.5920 14 6 10.5174 -0.4093 1.4340 15 6 10.9785 0.9260 -0.6040 16 1 10.5636 1.8608 -0.9511 17 6 12.3326 0.6903 -0.7121 18 7 12.8377 -0.4482 -0.2900 19 14 13.4502 1.9888 -1.4568 20 1 13.3658 3.2346 -0.6531 21 1 14.8506 1.4949 -1.4580 22 1 13.0224 2.2692 -2.8510 23 16 2.5418 -1.4258 0.0064 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.8988 2.0869 -0.0007 28 1 5.4180 -1.8446 0.0008 29 1 8.5173 1.3193 -0.0015 30 1 9.8654 -1.1668 1.8689 31 1 11.5455 -0.7713 1.4332 32 1 10.4552 0.5055 2.0234 33 1 13.7904 -0.6139 -0.3657 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320710445.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:52 Heat of formation + Delta-G solvation = -16.781630 kcal Electronic energy + Delta-G solvation = -19148.445640 eV Core-core repulsion = 15915.711495 eV Total energy + Delta-G solvation = -3232.734145 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.79822 -39.47739 -38.01310 -35.58066 -34.75618 -32.47849 -32.23667 -29.23358 -27.27589 -25.41195 -25.22936 -23.68552 -21.66708 -20.13327 -19.58125 -19.10348 -17.56885 -16.75613 -16.24817 -15.95984 -15.69110 -15.13046 -14.77576 -14.70035 -14.25382 -13.71310 -13.33189 -13.29923 -12.99976 -12.97569 -12.50971 -11.83650 -11.48289 -11.38616 -11.16212 -11.01956 -10.87554 -10.83455 -10.40270 -10.29346 -9.82350 -9.42141 -9.18139 -9.03889 -8.64867 -8.34759 -8.17936 -6.19235 -4.29096 0.48331 0.73832 1.42782 1.79381 2.54286 2.79434 3.24887 3.29466 3.31809 3.64787 3.76311 4.29802 4.56305 4.72941 4.88446 5.03064 5.13893 5.19730 5.47321 5.56491 5.74699 6.08421 6.67122 6.71321 6.81333 6.98856 7.14354 7.29154 7.55262 7.62563 7.76970 7.89879 8.02216 8.37742 8.55596 8.80893 9.38026 10.86805 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.044825 B = 0.003199 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.498253 B = 8750.045093 C = 9157.187753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.249 4.249 3 C 0.067 3.933 4 N -0.476 5.476 5 C 0.273 3.727 6 N -0.616 5.616 7 C 0.502 3.498 8 O -0.452 6.452 9 C 0.499 3.501 10 O -0.535 6.535 11 N -0.665 5.665 12 C 0.262 3.738 13 H 0.055 0.945 14 C -0.149 4.149 15 C -0.538 4.538 16 H 0.065 0.935 17 C 0.068 3.932 18 N -0.884 5.884 19 Si 0.905 3.095 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 S 0.125 5.875 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.178 0.822 28 H 0.434 0.566 29 H 0.403 0.597 30 H 0.017 0.983 31 H 0.095 0.905 32 H 0.031 0.969 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.642 -1.668 1.248 21.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.371 4.371 3 C -0.085 4.085 4 N -0.197 5.197 5 C -0.095 4.095 6 N -0.269 5.269 7 C 0.281 3.719 8 O -0.318 6.318 9 C 0.277 3.723 10 O -0.414 6.414 11 N -0.314 5.314 12 C 0.162 3.838 13 H 0.073 0.927 14 C -0.208 4.208 15 C -0.577 4.577 16 H 0.083 0.917 17 C -0.135 4.135 18 N -0.521 5.521 19 Si 0.732 3.268 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.201 1.201 23 S 0.375 5.625 24 H 0.092 0.908 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.195 0.805 28 H 0.274 0.726 29 H 0.238 0.762 30 H 0.036 0.964 31 H 0.114 0.886 32 H 0.050 0.950 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.995 -2.400 1.272 21.170 hybrid contribution 0.378 1.497 -0.375 1.589 sum -20.617 -0.903 0.897 20.656 Atomic orbital electron populations 1.20154 0.86596 1.03236 1.02768 1.25739 1.01351 0.93890 1.16121 1.21597 0.85982 1.00121 1.00772 1.66575 1.17574 1.15913 1.19679 1.23619 0.90810 0.92250 1.02846 1.42829 1.00675 1.12125 1.71288 1.21187 0.86908 0.86503 0.77309 1.90849 1.84719 1.14901 1.41365 1.19528 0.84948 0.87285 0.80530 1.90736 1.84788 1.15196 1.50644 1.46520 1.07450 1.09850 1.67539 1.19006 0.73591 0.96600 0.94650 0.92682 1.22108 1.03525 0.98307 0.96828 1.21158 0.92286 1.02368 1.41852 0.91734 1.24870 0.97832 0.95822 0.95000 1.69874 1.13472 1.23126 1.45592 0.86440 0.79256 0.81319 0.79738 1.20017 1.21064 1.20058 1.83922 0.96428 1.10015 1.72105 0.90767 0.90239 0.91289 0.80498 0.72647 0.76208 0.96415 0.88645 0.95032 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.41 36.01 0.37 -0.02 16 2 C -0.25 -2.35 6.59 -35.96 -0.24 -2.59 16 3 C 0.07 0.77 11.24 -19.17 -0.22 0.56 16 4 N -0.48 -7.37 8.64 -15.17 -0.13 -7.50 16 5 C 0.27 3.82 8.01 -87.54 -0.70 3.12 16 6 N -0.62 -8.97 5.39 -13.55 -0.07 -9.04 16 7 C 0.50 8.93 7.85 -11.66 -0.09 8.84 16 8 O -0.45 -8.96 15.10 5.46 0.08 -8.88 16 9 C 0.50 10.00 7.85 -11.65 -0.09 9.91 16 10 O -0.53 -11.56 16.14 5.48 0.09 -11.47 16 11 N -0.66 -14.27 5.06 -55.41 -0.28 -14.55 16 12 C 0.26 6.55 2.56 -69.08 -0.18 6.37 16 13 H 0.06 1.54 7.58 -51.93 -0.39 1.15 16 14 C -0.15 -3.61 9.26 37.16 0.34 -3.27 16 15 C -0.54 -14.18 8.73 -34.44 -0.30 -14.48 16 16 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 17 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 18 N -0.88 -24.33 11.32 55.43 0.63 -23.71 16 19 Si 0.91 20.54 29.54 -169.99 -5.02 15.52 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 23 S 0.12 1.24 23.22 -107.50 -2.50 -1.26 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.18 1.61 8.06 -52.48 -0.42 1.18 16 28 H 0.43 5.28 8.29 -40.82 -0.34 4.94 16 29 H 0.40 8.13 8.01 -40.82 -0.33 7.80 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 2.49 6.07 -51.93 -0.32 2.18 16 32 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 308.28 15.07 4.65 4.65 Total: -1.00 -31.27 308.28 -7.20 -38.47 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -3.45 Total: 7.61 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -1.19 Total: 10.17 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.14 Total: -54.79 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: 0.17 Total: -20.36 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.50 Total: -1.26 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.27 -7.20 -38.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320710445.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.688 kcal (2) G-P(sol) polarization free energy of solvation -31.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds