Wall clock time and date at job start Tue Mar 31 2020 06:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33526 * 125.97051 * 2 1 4 4 N 1.31912 * 114.56807 * 179.97438 * 3 2 1 5 5 C 1.29686 * 116.92159 * 0.02562 * 4 3 2 6 6 N 1.38754 * 124.94068 * 179.97438 * 5 4 3 7 7 C 1.34773 * 120.00127 * 359.97332 * 6 5 4 8 8 O 1.21391 * 120.00002 * 359.97438 * 7 6 5 9 9 C 1.49304 * 120.00156 * 180.02562 * 7 6 5 10 10 O 1.21368 * 119.99832 * 0.02562 * 9 7 6 11 11 N 1.34782 * 120.00224 * 179.97438 * 9 7 6 12 12 C 1.46496 * 120.00129 * 180.02562 * 11 9 7 13 13 H 1.09002 * 109.47402 * 34.99524 * 12 11 9 14 14 C 1.53003 * 109.47024 * 275.00203 * 12 11 9 15 15 C 1.50700 * 109.47420 * 155.00205 * 12 11 9 16 16 H 1.08007 * 119.99687 * 359.97438 * 15 12 11 17 17 C 1.37872 * 120.00125 * 180.02562 * 15 12 11 18 18 N 1.31513 * 120.00279 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 119.99949 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47342 * 59.99347 * 19 17 15 21 21 H 1.48501 * 109.46859 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46605 * 299.99403 * 19 17 15 23 23 S 1.70971 * 110.11525 * 359.75835 * 5 4 3 24 24 H 1.09002 * 109.47152 * 90.00130 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00230 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00211 * 1 2 3 27 27 H 1.08005 * 122.72109 * 359.95837 * 3 2 1 28 28 H 0.96999 * 119.99573 * 179.97438 * 6 5 4 29 29 H 0.96996 * 119.99701 * 0.02562 * 11 9 7 30 30 H 1.08997 * 109.47299 * 60.00015 * 14 12 11 31 31 H 1.08994 * 109.47142 * 180.02562 * 14 12 11 32 32 H 1.09007 * 109.46930 * 299.99845 * 14 12 11 33 33 H 0.96993 * 120.00489 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2913 1.0807 0.0000 4 7 3.5844 0.8199 0.0005 5 6 3.9314 -0.4297 0.0005 6 7 5.2400 -0.8911 0.0005 7 6 6.2636 -0.0144 0.0000 8 8 6.0408 1.1789 -0.0009 9 6 7.6717 -0.5109 -0.0006 10 8 7.8945 -1.7039 -0.0011 11 7 8.6954 0.3658 -0.0016 12 6 10.0770 -0.1213 -0.0027 13 1 10.1393 -1.0362 -0.5920 14 6 10.5174 -0.4093 1.4340 15 6 10.9785 0.9260 -0.6040 16 1 10.5636 1.8608 -0.9511 17 6 12.3326 0.6903 -0.7121 18 7 12.8377 -0.4482 -0.2900 19 14 13.4502 1.9888 -1.4568 20 1 13.3658 3.2346 -0.6531 21 1 14.8506 1.4949 -1.4580 22 1 13.0224 2.2692 -2.8510 23 16 2.5418 -1.4258 0.0064 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.8988 2.0869 -0.0007 28 1 5.4180 -1.8446 0.0008 29 1 8.5173 1.3193 -0.0015 30 1 9.8654 -1.1668 1.8689 31 1 11.5455 -0.7713 1.4332 32 1 10.4552 0.5055 2.0234 33 1 13.7904 -0.6139 -0.3657 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320710445.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:51 Heat of formation + Delta-G solvation = -39.167232 kcal Electronic energy + Delta-G solvation = -19149.416352 eV Core-core repulsion = 15915.711495 eV Total energy + Delta-G solvation = -3233.704857 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.10857 -40.69936 -39.47552 -37.16025 -36.24536 -34.37170 -33.02934 -31.13056 -28.30663 -27.38508 -26.36806 -24.87330 -23.09201 -21.76754 -20.81397 -20.49070 -18.82808 -18.02666 -17.87736 -17.30515 -17.17240 -16.90692 -16.04769 -15.91143 -15.50958 -15.10733 -14.89470 -14.45696 -14.01104 -13.86059 -13.73284 -13.56841 -13.11895 -12.94711 -12.89572 -12.73361 -12.31001 -12.16512 -12.13718 -11.94722 -11.19207 -11.08006 -10.64741 -10.36857 -10.25038 -10.03267 -9.26940 -8.21537 -6.39007 -0.50512 -0.17765 0.40501 0.58981 1.27370 1.45907 1.46838 1.55151 1.79561 2.16508 2.35185 2.51034 3.09185 3.31593 3.64504 4.07883 4.28140 4.67940 4.68506 4.81028 4.86936 4.91375 4.99389 5.05608 5.26258 5.26720 5.39381 5.54575 5.62704 5.77502 6.01533 6.27864 6.60089 6.67146 6.87515 6.99740 7.32924 8.84468 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.044825 B = 0.003199 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.498253 B = 8750.045093 C = 9157.187753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.225 4.225 3 C 0.034 3.966 4 N -0.514 5.514 5 C 0.224 3.776 6 N -0.604 5.604 7 C 0.513 3.487 8 O -0.478 6.478 9 C 0.502 3.498 10 O -0.552 6.552 11 N -0.668 5.668 12 C 0.269 3.731 13 H 0.018 0.982 14 C -0.137 4.137 15 C -0.556 4.556 16 H 0.069 0.931 17 C 0.022 3.978 18 N -0.912 5.912 19 Si 0.971 3.029 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.272 1.272 23 S 0.194 5.806 24 H 0.090 0.910 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.195 0.805 28 H 0.443 0.557 29 H 0.410 0.590 30 H 0.022 0.978 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.965 -1.372 1.095 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.348 4.348 3 C -0.116 4.116 4 N -0.236 5.236 5 C -0.143 4.143 6 N -0.258 5.258 7 C 0.292 3.708 8 O -0.347 6.347 9 C 0.281 3.719 10 O -0.432 6.432 11 N -0.318 5.318 12 C 0.167 3.833 13 H 0.036 0.964 14 C -0.196 4.196 15 C -0.594 4.594 16 H 0.088 0.912 17 C -0.179 4.179 18 N -0.549 5.549 19 Si 0.796 3.204 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.197 1.197 23 S 0.444 5.556 24 H 0.108 0.892 25 H 0.115 0.885 26 H 0.102 0.898 27 H 0.212 0.788 28 H 0.284 0.716 29 H 0.246 0.754 30 H 0.041 0.959 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.375 -2.130 1.123 23.499 hybrid contribution 0.853 1.309 -0.327 1.596 sum -22.522 -0.821 0.796 22.551 Atomic orbital electron populations 1.20386 0.83589 1.04843 1.04231 1.26390 1.03194 0.93221 1.11971 1.21886 0.85104 1.01736 1.02863 1.66498 1.19965 1.17515 1.19592 1.23753 0.91136 0.93417 1.05946 1.42523 1.00807 1.11973 1.70483 1.20464 0.86330 0.86406 0.77631 1.90837 1.84853 1.15714 1.43265 1.19895 0.85937 0.86759 0.79290 1.90715 1.85448 1.15971 1.51070 1.46283 1.06712 1.10401 1.68357 1.18653 0.75373 0.94997 0.94297 0.96374 1.21940 1.02311 0.98681 0.96658 1.21465 0.92943 1.02784 1.42196 0.91249 1.25707 0.99219 0.97752 0.95259 1.69998 1.13834 1.24756 1.46349 0.85406 0.77229 0.78859 0.78926 1.19182 1.20696 1.19693 1.83682 0.93432 1.08429 1.70035 0.89174 0.88526 0.89793 0.78818 0.71577 0.75435 0.95890 0.90641 0.94202 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.41 71.24 0.74 0.21 16 2 C -0.23 -3.60 6.59 24.62 0.16 -3.44 16 3 C 0.03 0.74 11.24 83.61 0.94 1.68 16 4 N -0.51 -15.66 8.64 -201.90 -1.74 -17.40 16 5 C 0.22 6.08 8.01 179.27 1.44 7.52 16 6 N -0.60 -17.55 5.39 -315.12 -1.70 -19.25 16 7 C 0.51 18.55 7.85 87.22 0.68 19.23 16 8 O -0.48 -19.30 15.10 -3.37 -0.05 -19.35 16 9 C 0.50 20.56 7.85 87.22 0.68 21.24 16 10 O -0.55 -24.42 16.14 -3.30 -0.05 -24.47 16 11 N -0.67 -29.36 5.06 -447.57 -2.27 -31.62 16 12 C 0.27 13.80 2.56 44.25 0.11 13.91 16 13 H 0.02 1.07 7.58 -2.39 -0.02 1.05 16 14 C -0.14 -6.78 9.26 71.98 0.67 -6.11 16 15 C -0.56 -29.64 8.73 25.60 0.22 -29.41 16 16 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 17 C 0.02 1.15 5.30 84.65 0.45 1.60 16 18 N -0.91 -50.99 11.32 21.45 0.24 -50.75 16 19 Si 0.97 42.03 29.54 68.60 2.03 44.06 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 23 S 0.19 3.35 23.22 -56.49 -1.31 2.04 16 24 H 0.09 0.49 8.14 -2.39 -0.02 0.48 16 25 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 27 H 0.20 3.24 8.06 -2.91 -0.02 3.21 16 28 H 0.44 10.66 8.29 -92.71 -0.77 9.89 16 29 H 0.41 16.87 8.01 -92.71 -0.74 16.13 16 30 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 4.04 6.07 -2.39 -0.01 4.03 16 32 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -68.25 308.28 0.91 -67.34 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -0.34 Total: 22.96 kcal Atomic # 6 Polarization: 20.34 SS G_CDS: 6.10 Total: 26.44 kcal Atomic # 7 Polarization: -113.55 SS G_CDS: -5.46 Total: -119.02 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -0.10 Total: -43.82 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -1.31 Total: 2.04 kcal Total: -68.25 0.91 -67.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320710445.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.172 kcal (2) G-P(sol) polarization free energy of solvation -68.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds