Wall clock time and date at job start Tue Mar 31 2020 05:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86797 * 119.99731 * 2 1 4 4 H 1.48507 * 109.47209 * 269.99789 * 3 2 1 5 5 H 1.48498 * 109.47483 * 30.00188 * 3 2 1 6 6 H 1.48504 * 109.46794 * 150.00275 * 3 2 1 7 7 C 1.38790 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99915 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00502 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00138 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47110 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00065 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00396 * 180.02562 * 11 10 9 14 14 C 1.47427 * 125.64541 * 359.97438 * 13 11 10 15 15 C 1.54908 * 104.83240 * 155.89410 * 14 13 11 16 16 C 1.55156 * 101.58474 * 37.00936 * 15 14 13 17 17 C 1.47023 * 125.65429 * 180.02562 * 13 11 10 18 18 H 1.09005 * 110.00851 * 300.52430 * 17 13 11 19 19 C 1.50692 * 109.88352 * 61.61720 * 17 13 11 20 20 N 1.34496 * 126.28782 * 222.81163 * 19 17 13 21 21 C 1.31131 * 105.61540 * 179.97438 * 20 19 17 22 22 O 1.33644 * 106.89535 * 359.97438 * 21 20 19 23 23 N 1.21293 * 109.81329 * 0.02562 * 22 21 20 24 24 H 0.97000 * 119.99887 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47501 * 60.00446 * 10 9 7 26 26 H 1.09000 * 109.47306 * 299.99786 * 10 9 7 27 27 H 1.09002 * 110.37117 * 37.05398 * 14 13 11 28 28 H 1.09004 * 110.36703 * 274.72679 * 14 13 11 29 29 H 1.08999 * 111.00585 * 278.93382 * 15 14 13 30 30 H 1.09002 * 111.00477 * 155.08788 * 15 14 13 31 31 H 1.08996 * 110.72150 * 206.13842 * 16 15 14 32 32 H 1.08998 * 110.87040 * 82.93068 * 16 15 14 33 33 H 1.08003 * 126.55533 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7911 -5.5023 -0.0021 13 7 2.8440 -6.3431 -0.0008 14 6 4.3150 -6.2448 -0.0002 15 6 4.8016 -7.5822 0.6117 16 6 3.7728 -8.5853 0.0262 17 6 2.4665 -7.7640 -0.0018 18 1 1.8670 -7.9913 0.8797 19 6 1.6852 -8.0858 -1.2495 20 7 0.5776 -8.8455 -1.3214 21 6 0.2379 -8.8552 -2.5879 22 8 1.1377 -8.1103 -3.2372 23 7 1.9572 -7.6796 -2.4535 24 1 -0.4850 0.8401 0.0004 25 1 3.1244 -3.7314 0.8894 26 1 3.1244 -3.7314 -0.8905 27 1 4.6390 -5.4058 0.6155 28 1 4.6883 -6.1356 -1.0185 29 1 4.7466 -7.5568 1.7000 30 1 5.8119 -7.8195 0.2786 31 1 3.6685 -9.4541 0.6760 32 1 4.0577 -8.8904 -0.9807 33 1 -0.6080 -9.3667 -3.0231 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326396357.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:43 Heat of formation + Delta-G solvation = 12.842882 kcal Electronic energy + Delta-G solvation = -19797.465111 eV Core-core repulsion = 16566.015581 eV Total energy + Delta-G solvation = -3231.449530 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -46.62859 -41.26395 -38.70364 -36.69141 -34.62585 -33.62608 -33.04623 -30.95288 -29.84587 -27.71034 -25.57429 -25.07386 -23.70248 -22.22959 -20.76756 -19.72660 -19.05132 -18.91574 -18.25866 -17.45754 -16.91948 -16.71389 -16.37904 -15.98933 -15.68271 -14.96537 -14.74596 -14.37148 -14.13171 -13.76484 -13.57386 -13.26762 -13.18642 -13.15490 -12.91392 -12.66130 -12.43057 -12.24413 -12.13700 -11.78659 -11.76078 -11.24693 -11.17546 -10.98321 -10.35063 -9.97486 -8.73958 -8.38217 -6.18187 0.26533 1.06538 1.25324 1.40679 1.42289 1.42598 1.54202 1.95841 2.20019 2.23554 2.70343 2.96186 3.16440 3.18368 3.44320 3.61009 3.79107 3.90224 4.10363 4.18514 4.28793 4.35130 4.48203 4.69059 4.70468 4.78692 4.83431 5.01840 5.02635 5.18334 5.25147 5.37751 6.16013 6.22413 6.95763 7.02639 7.20069 8.71424 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024057 B = 0.004385 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.628820 B = 6384.018760 C = 7096.290212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 1.001 2.999 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.256 1.256 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.117 4.117 11 C 0.547 3.453 12 O -0.561 6.561 13 N -0.610 5.610 14 C 0.086 3.914 15 C -0.114 4.114 16 C -0.107 4.107 17 C 0.217 3.783 18 H 0.095 0.905 19 C 0.155 3.845 20 N -0.514 5.514 21 C 0.178 3.822 22 O 0.070 5.930 23 N -0.398 5.398 24 H 0.272 0.728 25 H 0.112 0.888 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.078 0.922 33 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.103 -20.359 -2.383 23.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.190 4.190 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.180 1.180 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.077 5.923 10 C -0.268 4.268 11 C 0.336 3.664 12 O -0.439 6.439 13 N -0.345 5.345 14 C -0.036 4.036 15 C -0.151 4.151 16 C -0.146 4.146 17 C 0.111 3.889 18 H 0.113 0.887 19 C -0.119 4.119 20 N -0.247 5.247 21 C -0.061 4.061 22 O 0.012 5.988 23 N -0.106 5.106 24 H 0.081 0.919 25 H 0.130 0.870 26 H 0.119 0.881 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.097 0.903 33 H 0.333 0.667 Dipole moment (debyes) X Y Z Total from point charges 9.791 -20.080 -2.122 22.441 hybrid contribution 0.742 1.264 -0.304 1.497 sum 10.533 -18.817 -2.426 21.700 Atomic orbital electron populations 1.70190 1.08072 1.28730 1.47879 1.26161 0.95978 1.03386 0.93518 0.84917 0.78239 0.75739 0.78856 1.19284 1.20112 1.17994 1.23181 0.95334 0.91727 1.59197 0.89863 1.85600 1.10351 0.99345 1.97049 1.23281 1.03566 0.93607 1.06356 1.19911 0.85492 0.86124 0.74907 1.90694 1.17091 1.85702 1.50366 1.48539 1.08645 1.03958 1.73369 1.22766 0.76874 1.01507 1.02419 1.22831 0.99903 0.90633 1.01769 1.22710 0.89952 0.98345 1.03571 1.20052 0.96890 0.81947 0.89964 0.88686 1.26340 0.94012 0.95895 0.95645 1.71795 1.11806 1.21201 1.19882 1.31636 0.96748 0.91723 0.86015 1.85249 1.29331 1.48618 1.35599 1.74555 1.14015 1.19506 1.02514 0.91899 0.86970 0.88050 0.88822 0.90673 0.88691 0.86112 0.86492 0.90327 0.66749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.99 13.22 21.65 0.29 -56.70 16 2 C 0.01 0.83 5.49 84.85 0.47 1.29 16 3 Si 1.00 44.07 29.55 68.60 2.03 46.09 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.55 -31.95 9.50 67.95 0.65 -31.31 16 8 H 0.08 4.51 7.80 -2.91 -0.02 4.49 16 9 S -0.15 -8.72 20.57 -56.49 -1.16 -9.89 16 10 C -0.12 -5.04 5.16 71.23 0.37 -4.67 16 11 C 0.55 22.79 7.66 87.66 0.67 23.46 16 12 O -0.56 -28.56 15.70 -3.03 -0.05 -28.61 16 13 N -0.61 -18.59 3.05 -792.18 -2.41 -21.00 16 14 C 0.09 1.72 6.69 86.85 0.58 2.30 16 15 C -0.11 -1.36 7.08 31.99 0.23 -1.14 16 16 C -0.11 -1.66 6.47 31.78 0.21 -1.45 16 17 C 0.22 5.80 3.40 44.59 0.15 5.95 16 18 H 0.10 2.69 8.14 -2.38 -0.02 2.67 16 19 C 0.15 4.71 6.16 138.46 0.85 5.56 16 20 N -0.51 -14.35 11.55 -315.39 -3.64 -17.99 16 21 C 0.18 3.47 13.40 130.51 1.75 5.21 16 22 O 0.07 1.82 11.31 74.83 0.85 2.66 16 23 N -0.40 -12.51 12.14 -60.41 -0.73 -13.24 16 24 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 25 H 0.11 4.29 7.85 -2.40 -0.02 4.27 16 26 H 0.10 4.09 8.14 -2.40 -0.02 4.07 16 27 H 0.09 1.73 7.48 -2.39 -0.02 1.72 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 1.26 7.84 -2.39 -0.02 1.24 16 33 H 0.32 1.51 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -87.88 305.62 2.21 -85.67 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 1.13 Total: 7.80 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 5.92 Total: 5.21 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -6.50 Total: -108.94 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: 0.80 Total: -25.95 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.89 kcal Total: -87.88 2.21 -85.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326396357.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.512 kcal (2) G-P(sol) polarization free energy of solvation -87.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds