Wall clock time and date at job start Tue Mar 31 2020 05:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 120.00102 * 2 1 4 4 H 1.48501 * 109.47405 * 270.00308 * 3 2 1 5 5 H 1.48505 * 109.47032 * 30.00068 * 3 2 1 6 6 H 1.48497 * 109.47409 * 150.00077 * 3 2 1 7 7 C 1.38795 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00171 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47178 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.47429 * 125.64683 * 0.02562 * 13 11 10 15 15 C 1.54904 * 104.83171 * 204.09682 * 14 13 11 16 16 C 1.55158 * 101.58211 * 322.98854 * 15 14 13 17 17 C 1.47014 * 125.64925 * 179.71903 * 13 11 10 18 18 H 1.08999 * 109.88686 * 59.55315 * 17 13 11 19 19 C 1.50697 * 109.88027 * 298.38753 * 17 13 11 20 20 N 1.34505 * 126.28726 * 136.16796 * 19 17 13 21 21 C 1.31124 * 105.61407 * 179.90606 * 20 19 17 22 22 O 1.33644 * 106.89924 * 0.35203 * 21 20 19 23 23 N 1.21292 * 109.81021 * 359.76898 * 22 21 20 24 24 H 0.97005 * 119.99806 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 26 26 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 27 27 H 1.09004 * 110.36746 * 322.93213 * 14 13 11 28 28 H 1.08996 * 110.36514 * 85.14590 * 14 13 11 29 29 H 1.08998 * 111.00749 * 81.06988 * 15 14 13 30 30 H 1.09006 * 111.00190 * 204.87987 * 15 14 13 31 31 H 1.08997 * 110.71971 * 153.86387 * 16 15 14 32 32 H 1.08999 * 110.71810 * 277.14021 * 16 15 14 33 33 H 1.08002 * 126.54779 * 180.12796 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9874 -5.3027 -0.0030 12 8 0.7911 -5.5023 -0.0021 13 7 2.8441 -6.3431 -0.0037 14 6 4.3151 -6.2448 -0.0032 15 6 4.8021 -7.5817 -0.6157 16 6 3.7729 -8.5852 -0.0314 17 6 2.4666 -7.7639 0.0013 18 1 1.8660 -7.9911 -0.8795 19 6 1.6886 -8.0831 1.2518 20 7 0.5703 -8.8268 1.3256 21 6 0.2401 -8.8427 2.5945 22 8 1.1519 -8.1112 3.2424 23 7 1.9717 -7.6857 2.4562 24 1 -0.4850 0.8401 0.0004 25 1 3.1238 -3.7309 -0.8925 26 1 3.1252 -3.7317 0.8875 27 1 4.6395 -5.4054 -0.6183 28 1 4.6875 -6.1342 1.0152 29 1 4.7479 -7.5556 -1.7040 30 1 5.8125 -7.8190 -0.2825 31 1 3.6690 -9.4536 -0.6818 32 1 4.0589 -8.8883 0.9758 33 1 -0.6087 -9.3473 3.0319 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326396360.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:47 Heat of formation + Delta-G solvation = 42.673638 kcal Electronic energy + Delta-G solvation = -19796.432635 eV Core-core repulsion = 16566.276664 eV Total energy + Delta-G solvation = -3230.155971 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.59807 -39.99331 -37.36072 -35.66876 -32.54095 -32.43579 -31.87823 -29.77841 -28.50542 -25.50437 -24.51862 -24.09735 -22.62424 -21.35222 -19.46373 -18.03397 -17.98996 -17.61650 -16.85455 -16.30266 -15.53187 -15.07050 -14.80743 -14.55945 -14.09739 -13.82282 -13.57305 -13.01727 -12.59086 -12.57700 -12.37408 -12.24251 -11.86655 -11.51155 -11.48248 -11.17180 -11.06482 -11.02714 -11.01371 -10.76723 -10.13620 -9.82457 -9.44490 -9.07024 -8.71830 -8.24620 -6.51260 -6.21954 -3.92950 1.20988 2.17425 2.82762 2.94955 3.04673 3.22244 3.24923 3.30061 3.54588 3.67815 4.09033 4.19822 4.31050 4.40400 4.66823 4.94808 5.02892 5.08908 5.13267 5.31136 5.42878 5.50735 5.56509 5.59897 5.66109 5.69211 5.88484 5.90956 5.97376 6.11520 6.27667 7.55692 7.59387 8.17893 8.34821 8.48092 9.23201 10.85583 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024018 B = 0.004387 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.516628 B = 6380.843203 C = 7091.763568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.145 4.145 11 C 0.550 3.450 12 O -0.508 6.508 13 N -0.618 5.618 14 C 0.100 3.900 15 C -0.130 4.130 16 C -0.119 4.119 17 C 0.229 3.771 18 H 0.106 0.894 19 C 0.169 3.831 20 N -0.477 5.477 21 C 0.154 3.846 22 O 0.078 5.922 23 N -0.367 5.367 24 H 0.268 0.732 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.623 -19.532 2.356 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.295 4.295 11 C 0.339 3.661 12 O -0.381 6.381 13 N -0.356 5.356 14 C -0.023 4.023 15 C -0.168 4.168 16 C -0.158 4.158 17 C 0.123 3.877 18 H 0.124 0.876 19 C -0.105 4.105 20 N -0.210 5.210 21 C -0.087 4.087 22 O 0.018 5.982 23 N -0.073 5.073 24 H 0.078 0.922 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 7.259 -19.200 2.097 20.633 hybrid contribution 1.539 1.181 0.259 1.957 sum 8.798 -18.019 2.356 20.190 Atomic orbital electron populations 1.70021 1.05981 1.27473 1.46839 1.24990 0.95023 0.99029 0.94488 0.86159 0.79420 0.81507 0.78367 1.20226 1.20724 1.19665 1.22852 0.94899 0.91538 1.59018 0.90903 1.85414 1.04870 0.96362 1.96719 1.23502 1.06566 0.94537 1.04891 1.20150 0.85706 0.85500 0.74778 1.90725 1.14931 1.84992 1.47472 1.48608 1.07165 1.03986 1.75873 1.22358 0.79694 0.98806 1.01463 1.22799 0.98975 0.93693 1.01289 1.22685 0.92390 0.98026 1.02736 1.19664 0.94686 0.82735 0.90665 0.87649 1.26045 0.93243 0.95948 0.95292 1.71803 1.11456 1.19852 1.17845 1.30417 0.96981 0.94224 0.87043 1.85307 1.28556 1.48662 1.35692 1.74582 1.12567 1.18138 1.02014 0.92165 0.89107 0.89209 0.89690 0.91084 0.89910 0.89309 0.89019 0.90350 0.72308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.51 13.22 55.49 0.73 -25.78 16 2 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 3 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -15.49 9.50 30.94 0.29 -15.19 16 8 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.14 -3.09 5.16 36.01 0.19 -2.91 16 11 C 0.55 11.25 7.65 -10.98 -0.08 11.17 16 12 O -0.51 -12.41 15.70 5.56 0.09 -12.32 16 13 N -0.62 -9.60 3.05 -164.32 -0.50 -10.10 16 14 C 0.10 1.12 6.69 -2.53 -0.02 1.10 16 15 C -0.13 -1.01 7.09 -24.58 -0.17 -1.19 16 16 C -0.12 -1.08 6.48 -24.89 -0.16 -1.24 16 17 C 0.23 3.13 3.40 -68.10 -0.23 2.89 16 18 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 19 C 0.17 2.57 6.17 -156.37 -0.96 1.61 16 20 N -0.48 -6.76 11.55 -13.72 -0.16 -6.92 16 21 C 0.15 1.61 13.40 51.98 0.70 2.31 16 22 O 0.08 1.02 11.31 18.10 0.20 1.23 16 23 N -0.37 -5.77 12.15 30.87 0.38 -5.40 16 24 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.09 1.77 7.85 -51.92 -0.41 1.36 16 26 H 0.09 1.82 8.14 -51.92 -0.42 1.40 16 27 H 0.08 0.89 7.48 -51.93 -0.39 0.51 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.73 7.83 -51.93 -0.41 0.32 16 33 H 0.26 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 305.64 15.07 4.61 4.61 Total: -1.00 -38.19 305.64 -6.15 -44.33 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -3.71 Total: -2.92 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -0.55 Total: 0.59 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.45 Total: -48.20 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.29 Total: -11.10 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -38.19 -6.15 -44.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326396360.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.005 kcal (2) G-P(sol) polarization free energy of solvation -38.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds