Wall clock time and date at job start Tue Mar 31 2020 06:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29864 * 125.54557 * 2 1 4 4 N 1.26259 * 117.78181 * 179.97438 * 3 2 1 5 5 C 1.30756 * 116.25250 * 0.02562 * 4 3 2 6 6 C 1.47316 * 126.18817 * 180.02562 * 5 4 3 7 7 O 1.21604 * 120.00233 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99694 * 0.02562 * 6 5 4 9 9 C 1.47021 * 125.65165 * 359.97438 * 8 6 5 10 10 C 1.54320 * 107.27383 * 178.97713 * 9 8 6 11 11 C 1.55163 * 102.94147 * 337.80980 * 10 9 8 12 12 O 1.42905 * 111.00244 * 277.42891 * 11 10 9 13 13 C 1.50698 * 111.00660 * 153.61367 * 11 10 9 14 14 H 1.08002 * 119.99847 * 3.18328 * 13 11 10 15 15 C 1.37871 * 120.00404 * 183.17791 * 13 11 10 16 16 N 1.31519 * 119.99458 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00501 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46727 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46971 * 120.00003 * 17 15 13 20 20 H 1.48494 * 109.47420 * 240.00150 * 17 15 13 21 21 C 1.47524 * 125.63317 * 180.02562 * 8 6 5 22 22 S 1.71284 * 125.54221 * 180.31633 * 2 1 3 23 23 H 1.08997 * 109.46764 * 90.02184 * 1 2 3 24 24 H 1.08998 * 109.47355 * 210.02840 * 1 2 3 25 25 H 1.08996 * 109.46922 * 330.02800 * 1 2 3 26 26 H 1.09008 * 109.87829 * 59.55894 * 9 8 6 27 27 H 1.09003 * 110.01182 * 298.46925 * 9 8 6 28 28 H 1.09002 * 110.72325 * 219.44906 * 10 9 8 29 29 H 1.08996 * 110.71901 * 96.16983 * 10 9 8 30 30 H 0.96696 * 114.00036 * 176.81949 * 12 11 10 31 31 H 0.97010 * 119.99713 * 180.02562 * 16 15 13 32 32 H 1.09004 * 110.36953 * 85.27503 * 21 8 6 33 33 H 1.09001 * 110.41107 * 322.91781 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2620 1.0566 0.0000 4 7 3.5130 0.8861 0.0005 5 6 3.9277 -0.3540 0.0004 6 6 5.3311 -0.8019 0.0015 7 8 5.5902 -1.9900 0.0009 8 7 6.3279 0.1053 0.0032 9 6 6.1576 1.5656 0.0036 10 6 7.5679 2.1914 0.0319 11 6 8.4424 1.0510 0.6170 12 8 8.3658 1.0273 2.0438 13 6 9.8722 1.1768 0.1577 14 1 10.1716 2.0165 -0.4519 15 6 10.7980 0.2200 0.5158 16 7 10.4332 -0.8027 1.2579 17 14 12.5702 0.3755 -0.0540 18 1 12.7211 1.6064 -0.8711 19 1 13.4652 0.4540 1.1284 20 1 12.9330 -0.8096 -0.8718 21 6 7.7706 -0.2030 0.0038 22 16 2.5027 -1.3937 -0.0077 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3634 -0.8897 0.5143 25 1 -0.3633 0.8902 0.5134 26 1 5.5976 1.8732 0.8868 27 1 5.6306 1.8799 -0.8974 28 1 7.5889 3.0658 0.6824 29 1 7.8952 2.4505 -0.9749 30 1 8.8571 0.3014 2.4520 31 1 11.0847 -1.4757 1.5102 32 1 8.1247 -0.3635 -1.0145 33 1 7.9716 -1.0801 0.6190 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327072949.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:33 Heat of formation + Delta-G solvation = -13.600985 kcal Electronic energy + Delta-G solvation = -20072.419890 eV Core-core repulsion = 16839.823669 eV Total energy + Delta-G solvation = -3232.596222 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.23125 -39.35274 -37.26897 -34.39026 -33.27943 -32.22161 -30.50718 -29.32126 -27.74250 -26.00128 -25.00390 -23.02735 -21.38007 -19.76897 -19.15641 -18.80710 -17.22201 -16.66229 -16.12384 -15.44705 -15.04585 -14.92777 -14.57940 -14.16191 -13.50583 -13.43523 -13.09094 -13.04107 -12.93425 -12.87660 -12.12525 -11.66544 -11.54403 -11.09305 -10.88623 -10.78507 -10.60409 -10.47601 -10.36338 -10.20636 -9.83379 -9.82567 -9.78811 -9.40632 -8.72838 -8.43701 -7.92056 -6.31884 -4.41279 -0.03181 0.64055 1.18307 2.16790 3.17889 3.26946 3.28586 3.31075 3.34497 3.92079 4.24165 4.38832 4.66300 4.95134 5.02719 5.07483 5.24090 5.47104 5.52417 5.77705 5.83765 6.06753 6.29441 6.49477 6.71822 6.78639 6.84218 7.17283 7.29265 7.71053 7.94142 7.97366 8.25888 8.44018 8.63212 9.27963 9.38585 10.75520 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.041560 B = 0.004228 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.556771 B = 6621.513880 C = 6996.348886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.016 4.016 3 N -0.271 5.271 4 N -0.210 5.210 5 C -0.032 4.032 6 C 0.597 3.403 7 O -0.536 6.536 8 N -0.575 5.575 9 C 0.109 3.891 10 C -0.119 4.119 11 C 0.249 3.751 12 O -0.582 6.582 13 C -0.536 4.536 14 H 0.069 0.931 15 C 0.071 3.929 16 N -0.894 5.894 17 Si 0.905 3.095 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.282 1.282 21 C 0.093 3.907 22 S 0.210 5.790 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.383 0.617 31 H 0.271 0.729 32 H 0.069 0.931 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.381 -0.053 -2.794 16.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.292 4.292 3 N -0.112 5.112 4 N -0.053 5.053 5 C -0.311 4.311 6 C 0.379 3.621 7 O -0.414 6.414 8 N -0.306 5.306 9 C -0.014 4.014 10 C -0.157 4.157 11 C 0.208 3.792 12 O -0.391 6.391 13 C -0.575 4.575 14 H 0.087 0.913 15 C -0.133 4.133 16 N -0.533 5.533 17 Si 0.732 3.268 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.208 1.208 21 C -0.028 4.028 22 S 0.453 5.547 23 H 0.111 0.889 24 H 0.105 0.895 25 H 0.114 0.886 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.234 0.766 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.543 -0.069 -2.822 16.782 hybrid contribution 1.266 -0.442 -0.194 1.355 sum -15.277 -0.512 -3.016 15.581 Atomic orbital electron populations 1.20416 0.83633 1.04882 1.04471 1.29488 1.04399 0.92633 1.02728 1.71347 0.97281 1.27082 1.15492 1.72180 1.05223 1.16656 1.11232 1.29950 1.01245 0.92290 1.07636 1.16121 0.81033 0.85459 0.79527 1.90846 1.82826 1.15111 1.52625 1.48625 1.07676 1.07146 1.67140 1.22155 0.98670 0.79005 1.01529 1.22684 0.92560 0.99139 1.01342 1.19639 0.92330 0.87772 0.79463 1.86109 1.76367 1.55989 1.20608 1.21521 0.92952 1.09375 1.33614 0.91258 1.25094 0.99716 0.94425 0.94030 1.69661 1.35445 1.11833 1.36404 0.86324 0.83595 0.78244 0.78607 1.19528 1.20726 1.20753 1.23546 0.74237 1.03160 1.01827 1.84790 0.96448 1.09581 1.63913 0.88882 0.89526 0.88600 0.91143 0.91722 0.90422 0.90309 0.76567 0.91939 0.91304 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.48 36.01 0.38 -0.09 16 2 C -0.02 -0.18 7.53 -13.11 -0.10 -0.28 16 3 N -0.27 -4.08 11.59 32.66 0.38 -3.71 16 4 N -0.21 -3.61 9.18 32.94 0.30 -3.30 16 5 C -0.03 -0.55 7.44 -14.32 -0.11 -0.66 16 6 C 0.60 12.37 7.84 -12.57 -0.10 12.28 16 7 O -0.54 -12.29 17.23 5.27 0.09 -12.20 16 8 N -0.58 -12.28 3.33 -171.74 -0.57 -12.85 16 9 C 0.11 2.10 5.53 -3.07 -0.02 2.08 16 10 C -0.12 -2.42 6.13 -24.90 -0.15 -2.57 16 11 C 0.25 5.99 0.88 -89.62 -0.08 5.92 16 12 O -0.58 -14.85 13.17 -35.23 -0.46 -15.31 16 13 C -0.54 -13.76 8.26 -34.44 -0.28 -14.04 16 14 H 0.07 1.74 7.78 -52.49 -0.41 1.34 16 15 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 16 N -0.89 -23.47 10.69 55.43 0.59 -22.88 16 17 Si 0.91 20.08 29.54 -169.99 -5.02 15.06 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 21 C 0.09 2.21 5.51 -2.47 -0.01 2.20 16 22 S 0.21 2.65 23.13 -107.50 -2.49 0.16 16 23 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 1.37 7.65 -51.92 -0.40 0.97 16 27 H 0.06 1.14 7.76 -51.93 -0.40 0.74 16 28 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 29 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 30 H 0.38 10.03 7.25 45.56 0.33 10.36 16 31 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.07 1.65 8.03 -51.93 -0.42 1.23 16 33 H 0.09 2.36 7.48 -51.93 -0.39 1.97 16 LS Contribution 298.92 15.07 4.50 4.50 Total: -1.00 -29.73 298.92 -6.17 -35.90 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -2.93 Total: 8.08 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -0.57 Total: 6.54 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.70 Total: -42.74 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.37 Total: -27.51 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.49 Total: 0.16 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.73 -6.17 -35.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327072949.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.299 kcal (2) G-P(sol) polarization free energy of solvation -29.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds