Wall clock time and date at job start Tue Mar 31 2020 05:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86800 * 120.00363 * 2 1 4 4 H 1.48504 * 109.46564 * 270.00020 * 3 2 1 5 5 H 1.48499 * 109.47042 * 29.99662 * 3 2 1 6 6 H 1.48497 * 109.47281 * 149.99864 * 3 2 1 7 7 C 1.38640 * 119.99505 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00155 * 0.02562 * 7 2 1 9 9 O 1.34801 * 119.99579 * 179.97438 * 7 2 1 10 10 C 1.35774 * 116.99896 * 174.98177 * 9 7 2 11 11 C 1.38740 * 120.08903 * 5.21465 * 10 9 7 12 12 C 1.38339 * 119.98189 * 180.02562 * 11 10 9 13 13 F 1.35096 * 119.92688 * 180.02562 * 12 11 10 14 14 C 1.38551 * 120.14995 * 0.02562 * 12 11 10 15 15 C 1.38184 * 120.17992 * 359.72192 * 14 12 11 16 16 C 1.38716 * 120.01993 * 0.55385 * 15 14 12 17 17 N 1.40082 * 120.08009 * 179.72071 * 16 15 14 18 18 C 1.34782 * 119.99738 * 335.24250 * 17 16 15 19 19 O 1.21299 * 120.00176 * 354.54801 * 18 17 16 20 20 C 1.50700 * 119.99882 * 174.55706 * 18 17 16 21 21 H 1.09002 * 115.55179 * 34.32475 * 20 18 17 22 22 C 1.53003 * 117.49859 * 248.61675 * 20 18 17 23 23 C 1.52997 * 59.99973 * 252.50808 * 22 20 18 24 24 H 1.08997 * 117.50003 * 252.50618 * 23 22 20 25 25 F 1.39908 * 117.49864 * 107.48825 * 23 22 20 26 26 H 0.97006 * 119.99204 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.00528 * 0.02562 * 11 10 9 28 28 H 1.08008 * 119.91000 * 180.02562 * 14 12 11 29 29 H 1.07998 * 119.99172 * 180.30106 * 15 14 12 30 30 H 0.96996 * 120.00234 * 155.50631 * 17 16 15 31 31 H 1.09001 * 117.49525 * 0.02562 * 22 20 18 32 32 H 1.09000 * 117.49932 * 145.01975 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0462 -1.4002 5 1 1.4473 2.6527 0.7000 6 1 3.5474 1.4401 0.7000 7 6 2.0088 -1.2007 0.0005 8 1 1.4688 -2.1359 0.0005 9 8 3.3569 -1.2007 0.0000 10 6 3.9733 -2.4058 0.1064 11 6 3.2238 -3.5734 0.1005 12 6 3.8541 -4.8000 0.2095 13 9 3.1233 -5.9362 0.2031 14 6 5.2332 -4.8659 0.3253 15 6 5.9864 -3.7073 0.3267 16 6 5.3614 -2.4732 0.2235 17 7 6.1233 -1.2977 0.2307 18 6 7.3376 -1.2852 0.8153 19 8 7.7294 -2.2607 1.4205 20 6 8.2086 -0.0593 0.7170 21 1 7.6801 0.8940 0.7150 22 6 9.4823 -0.1632 -0.1243 23 6 9.5760 -0.1075 1.4018 24 1 9.9472 0.8142 1.8499 25 9 9.9220 -1.2862 2.0713 26 1 -0.4849 0.8402 -0.0004 27 1 2.1486 -3.5246 0.0107 28 1 5.7213 -5.8257 0.4098 29 1 7.0615 -3.7625 0.4123 30 1 5.7752 -0.4917 -0.1817 31 1 9.6900 -1.1182 -0.6071 32 1 9.7919 0.7218 -0.6802 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340565663.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:10 Heat of formation + Delta-G solvation = -93.731462 kcal Electronic energy + Delta-G solvation = -21686.874791 eV Core-core repulsion = 17864.670714 eV Total energy + Delta-G solvation = -3822.204078 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.081 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.30887 -47.58608 -40.37438 -38.92235 -36.74298 -35.76852 -34.27056 -32.54395 -29.67582 -28.80321 -25.55697 -24.71113 -22.71027 -22.30015 -21.49849 -19.95723 -18.38058 -18.08750 -17.73782 -16.93356 -16.20026 -15.52139 -15.41510 -15.27620 -14.96447 -14.70788 -14.51708 -14.15779 -13.92948 -13.77989 -13.48243 -13.24463 -13.01776 -12.52466 -12.38717 -12.31903 -11.92271 -11.55343 -11.02054 -10.84580 -10.68273 -10.51138 -10.31515 -9.95514 -9.78820 -9.44193 -9.04364 -8.01735 -7.25647 -6.57837 -4.25318 1.62569 1.97205 2.51541 3.07035 3.08339 3.13089 3.19087 3.42365 3.87309 4.05019 4.19530 4.35566 4.42179 4.52163 4.74668 4.90886 4.91072 4.96405 5.29209 5.45661 5.54251 5.65709 5.79818 5.86104 6.03463 6.35982 6.65688 6.77201 6.82934 6.90997 7.41213 7.57756 7.69126 7.83421 8.30810 8.74745 9.28778 10.49282 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.012726 B = 0.006561 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.726448 B = 4266.897427 C = 6280.282016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.066 3.934 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.391 4.391 8 H 0.109 0.891 9 O -0.210 6.210 10 C 0.163 3.837 11 C -0.244 4.244 12 C 0.128 3.872 13 F -0.148 7.148 14 C -0.218 4.218 15 C -0.062 4.062 16 C 0.063 3.937 17 N -0.646 5.646 18 C 0.534 3.466 19 O -0.514 6.514 20 C -0.207 4.207 21 H 0.139 0.861 22 C -0.164 4.164 23 C 0.053 3.947 24 H 0.140 0.860 25 F -0.164 7.164 26 H 0.282 0.718 27 H 0.150 0.850 28 H 0.125 0.875 29 H 0.149 0.851 30 H 0.413 0.587 31 H 0.111 0.889 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.481 2.302 -1.197 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.466 4.466 8 H 0.127 0.873 9 O -0.115 6.115 10 C 0.108 3.892 11 C -0.264 4.264 12 C 0.108 3.892 13 F -0.127 7.127 14 C -0.238 4.238 15 C -0.082 4.082 16 C -0.031 4.031 17 N -0.289 5.289 18 C 0.320 3.680 19 O -0.390 6.390 20 C -0.229 4.229 21 H 0.157 0.843 22 C -0.202 4.202 23 C 0.017 3.983 24 H 0.158 0.842 25 F -0.144 7.144 26 H 0.092 0.908 27 H 0.167 0.833 28 H 0.143 0.857 29 H 0.166 0.834 30 H 0.249 0.751 31 H 0.130 0.870 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.629 1.942 -0.773 15.768 hybrid contribution -0.495 0.856 -0.186 1.007 sum 15.133 2.798 -0.959 15.420 Atomic orbital electron populations 1.69648 1.05573 1.28742 1.46794 1.24480 0.95059 0.98829 0.95507 0.86192 0.80321 0.81493 0.78924 1.19680 1.20580 1.18431 1.20756 0.76294 0.96900 1.52688 0.87345 1.83477 1.23202 1.24727 1.80104 1.18411 0.89251 0.85922 0.95568 1.20974 1.02130 0.90050 1.13292 1.17471 0.89080 0.81348 1.01329 1.91428 1.77863 1.49397 1.94012 1.20567 0.91566 0.99073 1.12610 1.20781 1.00711 0.88996 0.97701 1.16926 0.87069 0.86418 1.12687 1.43098 1.16908 1.12934 1.55999 1.19454 0.81655 0.88152 0.78700 1.90716 1.72675 1.35213 1.40430 1.22959 0.91489 1.00126 1.08342 0.84336 1.23683 0.97124 1.05714 0.93661 1.21978 0.97190 0.87031 0.92118 0.84227 1.92905 1.92088 1.48476 1.80905 0.90778 0.83266 0.85656 0.83393 0.75089 0.87029 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.98 13.96 55.48 0.77 -23.21 16 2 C 0.07 1.73 5.49 -17.51 -0.10 1.63 16 3 Si 0.91 19.73 28.62 -169.99 -4.86 14.87 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 6 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.39 -10.34 9.94 30.88 0.31 -10.03 16 8 H 0.11 2.98 5.44 -52.49 -0.29 2.70 16 9 O -0.21 -5.02 7.99 0.06 0.00 -5.02 16 10 C 0.16 3.57 6.66 -38.94 -0.26 3.31 16 11 C -0.24 -5.26 9.14 -39.36 -0.36 -5.62 16 12 C 0.13 2.52 7.29 -39.43 -0.29 2.23 16 13 F -0.15 -2.85 17.26 2.25 0.04 -2.81 16 14 C -0.22 -3.94 10.02 -39.49 -0.40 -4.34 16 15 C -0.06 -1.14 8.72 -39.42 -0.34 -1.49 16 16 C 0.06 1.24 6.45 -83.45 -0.54 0.70 16 17 N -0.65 -10.83 5.29 -9.71 -0.05 -10.88 16 18 C 0.53 8.38 7.42 -10.98 -0.08 8.29 16 19 O -0.51 -9.65 12.31 5.54 0.07 -9.59 16 20 C -0.21 -2.24 6.19 -91.77 -0.57 -2.80 16 21 H 0.14 1.14 8.14 -51.93 -0.42 0.72 16 22 C -0.16 -1.36 10.22 -26.73 -0.27 -1.63 16 23 C 0.05 0.53 7.82 -26.73 -0.21 0.32 16 24 H 0.14 0.86 8.14 -51.93 -0.42 0.44 16 25 F -0.16 -2.35 15.71 2.25 0.04 -2.32 16 26 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.15 3.37 5.63 -52.48 -0.30 3.07 16 28 H 0.13 1.95 8.06 -52.48 -0.42 1.53 16 29 H 0.15 2.67 5.78 -52.49 -0.30 2.36 16 30 H 0.41 6.30 8.34 -40.82 -0.34 5.96 16 31 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 291.97 15.07 4.40 4.40 Total: -1.00 -30.43 291.97 -5.18 -35.60 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -2.47 Total: 8.38 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -3.11 Total: -9.43 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.72 Total: -34.09 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.07 Total: -14.61 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.07 Total: -5.12 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.86 Total: 14.87 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.43 -5.18 -35.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340565663.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.128 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds