Wall clock time and date at job start Tue Mar 31 2020 05:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86800 * 120.00363 * 2 1 4 4 H 1.48504 * 109.46564 * 270.00020 * 3 2 1 5 5 H 1.48499 * 109.47042 * 29.99662 * 3 2 1 6 6 H 1.48497 * 109.47281 * 149.99864 * 3 2 1 7 7 C 1.38640 * 119.99505 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00155 * 0.02562 * 7 2 1 9 9 O 1.34801 * 119.99579 * 179.97438 * 7 2 1 10 10 C 1.35774 * 116.99896 * 174.98177 * 9 7 2 11 11 C 1.38740 * 120.08903 * 5.21465 * 10 9 7 12 12 C 1.38339 * 119.98189 * 180.02562 * 11 10 9 13 13 F 1.35096 * 119.92688 * 180.02562 * 12 11 10 14 14 C 1.38551 * 120.14995 * 0.02562 * 12 11 10 15 15 C 1.38184 * 120.17992 * 359.72192 * 14 12 11 16 16 C 1.38716 * 120.01993 * 0.55385 * 15 14 12 17 17 N 1.40082 * 120.08009 * 179.72071 * 16 15 14 18 18 C 1.34782 * 119.99738 * 335.24250 * 17 16 15 19 19 O 1.21299 * 120.00176 * 354.54801 * 18 17 16 20 20 C 1.50700 * 119.99882 * 174.55706 * 18 17 16 21 21 H 1.09002 * 115.55179 * 34.32475 * 20 18 17 22 22 C 1.53003 * 117.49859 * 248.61675 * 20 18 17 23 23 C 1.52997 * 59.99973 * 252.50808 * 22 20 18 24 24 H 1.08997 * 117.50003 * 252.50618 * 23 22 20 25 25 F 1.39908 * 117.49864 * 107.48825 * 23 22 20 26 26 H 0.97006 * 119.99204 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.00528 * 0.02562 * 11 10 9 28 28 H 1.08008 * 119.91000 * 180.02562 * 14 12 11 29 29 H 1.07998 * 119.99172 * 180.30106 * 15 14 12 30 30 H 0.96996 * 120.00234 * 155.50631 * 17 16 15 31 31 H 1.09001 * 117.49525 * 0.02562 * 22 20 18 32 32 H 1.09000 * 117.49932 * 145.01975 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0462 -1.4002 5 1 1.4473 2.6527 0.7000 6 1 3.5474 1.4401 0.7000 7 6 2.0088 -1.2007 0.0005 8 1 1.4688 -2.1359 0.0005 9 8 3.3569 -1.2007 0.0000 10 6 3.9733 -2.4058 0.1064 11 6 3.2238 -3.5734 0.1005 12 6 3.8541 -4.8000 0.2095 13 9 3.1233 -5.9362 0.2031 14 6 5.2332 -4.8659 0.3253 15 6 5.9864 -3.7073 0.3267 16 6 5.3614 -2.4732 0.2235 17 7 6.1233 -1.2977 0.2307 18 6 7.3376 -1.2852 0.8153 19 8 7.7294 -2.2607 1.4205 20 6 8.2086 -0.0593 0.7170 21 1 7.6801 0.8940 0.7150 22 6 9.4823 -0.1632 -0.1243 23 6 9.5760 -0.1075 1.4018 24 1 9.9472 0.8142 1.8499 25 9 9.9220 -1.2862 2.0713 26 1 -0.4849 0.8402 -0.0004 27 1 2.1486 -3.5246 0.0107 28 1 5.7213 -5.8257 0.4098 29 1 7.0615 -3.7625 0.4123 30 1 5.7752 -0.4917 -0.1817 31 1 9.6900 -1.1182 -0.6071 32 1 9.7919 0.7218 -0.6802 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340565663.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:09 Heat of formation + Delta-G solvation = -112.981396 kcal Electronic energy + Delta-G solvation = -21687.709531 eV Core-core repulsion = 17864.670714 eV Total energy + Delta-G solvation = -3823.038817 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.081 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.89552 -48.49303 -41.80598 -40.43951 -38.27440 -36.73652 -35.68924 -34.49153 -31.31568 -30.35199 -27.42257 -25.86105 -23.96745 -23.31290 -23.01179 -21.17816 -20.18649 -19.70023 -18.82135 -18.39083 -17.46193 -17.08948 -16.78696 -16.55900 -16.35223 -16.06686 -15.85287 -15.61452 -15.53706 -15.24909 -15.05257 -14.55211 -14.27541 -13.99606 -13.81615 -13.64516 -13.17771 -13.09505 -12.64579 -12.43004 -12.17706 -11.67867 -11.43302 -11.39816 -11.07807 -10.95386 -10.78770 -9.67824 -8.84683 -8.52970 -6.28074 0.06074 0.33912 1.33509 1.35483 1.39683 1.52100 1.91624 2.26189 2.53269 2.65715 2.72063 2.99803 3.13367 3.32594 3.50362 3.62938 3.85099 4.07983 4.09311 4.17126 4.23687 4.49745 4.77752 4.80311 4.84348 5.06035 5.12036 5.13842 5.23588 5.39072 5.56034 5.78046 6.02123 6.38434 6.77928 7.03772 7.38952 8.57795 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.012726 B = 0.006561 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.726448 B = 4266.897427 C = 6280.282016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.011 3.989 3 Si 0.973 3.027 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.247 1.247 7 C -0.404 4.404 8 H 0.078 0.922 9 O -0.219 6.219 10 C 0.138 3.862 11 C -0.255 4.255 12 C 0.117 3.883 13 F -0.146 7.146 14 C -0.192 4.192 15 C -0.064 4.064 16 C 0.075 3.925 17 N -0.647 5.647 18 C 0.530 3.470 19 O -0.549 6.549 20 C -0.221 4.221 21 H 0.170 0.830 22 C -0.140 4.140 23 C 0.041 3.959 24 H 0.182 0.818 25 F -0.196 7.196 26 H 0.286 0.714 27 H 0.128 0.872 28 H 0.160 0.840 29 H 0.160 0.840 30 H 0.421 0.579 31 H 0.098 0.902 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.721 3.808 -1.452 19.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.188 4.188 3 Si 0.794 3.206 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.170 1.170 7 C -0.480 4.480 8 H 0.096 0.904 9 O -0.126 6.126 10 C 0.086 3.914 11 C -0.276 4.276 12 C 0.097 3.903 13 F -0.124 7.124 14 C -0.211 4.211 15 C -0.084 4.084 16 C -0.020 4.020 17 N -0.292 5.292 18 C 0.319 3.681 19 O -0.427 6.427 20 C -0.242 4.242 21 H 0.187 0.813 22 C -0.177 4.177 23 C 0.005 3.995 24 H 0.199 0.801 25 F -0.176 7.176 26 H 0.096 0.904 27 H 0.146 0.854 28 H 0.177 0.823 29 H 0.178 0.822 30 H 0.258 0.742 31 H 0.116 0.884 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 18.903 3.427 -1.037 19.240 hybrid contribution -1.355 0.145 -0.089 1.366 sum 17.548 3.572 -1.126 17.944 Atomic orbital electron populations 1.69751 1.07294 1.29938 1.48846 1.25393 0.95907 1.02588 0.94919 0.85186 0.79303 0.76448 0.79698 1.18281 1.20018 1.17014 1.20638 0.77564 0.96265 1.53521 0.90418 1.83426 1.21527 1.25399 1.82219 1.18718 0.90315 0.85519 0.96882 1.20989 1.01400 0.91350 1.13836 1.17498 0.89823 0.80768 1.02236 1.91432 1.77982 1.48953 1.94058 1.20952 0.90585 1.00536 1.09052 1.21011 1.01269 0.88700 0.97433 1.17110 0.86357 0.88133 1.10434 1.43252 1.17242 1.12310 1.56356 1.20381 0.81166 0.89385 0.77157 1.90691 1.73179 1.37105 1.41718 1.23050 0.91568 0.98677 1.10914 0.81285 1.23856 0.94047 1.06913 0.92905 1.22654 0.96286 0.87156 0.93406 0.80091 1.92838 1.92303 1.50685 1.81763 0.90387 0.85409 0.82271 0.82233 0.74156 0.88386 0.81930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.55 13.96 21.61 0.30 -52.25 16 2 C 0.01 0.61 5.49 84.83 0.47 1.08 16 3 Si 0.97 40.42 28.62 68.60 1.96 42.39 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 5 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 7 C -0.40 -22.32 9.94 67.92 0.68 -21.64 16 8 H 0.08 4.63 5.44 -2.91 -0.02 4.61 16 9 O -0.22 -10.67 7.99 -22.71 -0.18 -10.85 16 10 C 0.14 6.14 6.66 22.69 0.15 6.29 16 11 C -0.25 -11.41 9.14 22.41 0.20 -11.21 16 12 C 0.12 4.57 7.29 22.37 0.16 4.74 16 13 F -0.15 -5.54 17.26 44.97 0.78 -4.76 16 14 C -0.19 -6.54 10.02 22.33 0.22 -6.32 16 15 C -0.06 -2.26 8.72 22.37 0.19 -2.06 16 16 C 0.07 2.86 6.45 38.23 0.25 3.11 16 17 N -0.65 -20.61 5.29 -303.02 -1.60 -22.21 16 18 C 0.53 15.50 7.42 87.66 0.65 16.15 16 19 O -0.55 -19.79 12.31 -3.09 -0.04 -19.83 16 20 C -0.22 -3.95 6.19 -11.54 -0.07 -4.02 16 21 H 0.17 1.97 8.14 -2.39 -0.02 1.95 16 22 C -0.14 -1.72 10.22 30.59 0.31 -1.41 16 23 C 0.04 0.66 7.82 30.59 0.24 0.90 16 24 H 0.18 1.32 8.14 -2.39 -0.02 1.30 16 25 F -0.20 -5.27 15.71 44.97 0.71 -4.57 16 26 H 0.29 14.99 8.31 -92.70 -0.77 14.22 16 27 H 0.13 6.24 5.63 -2.91 -0.02 6.22 16 28 H 0.16 4.38 8.06 -2.91 -0.02 4.36 16 29 H 0.16 5.41 5.78 -2.91 -0.02 5.40 16 30 H 0.42 11.99 8.34 -92.71 -0.77 11.22 16 31 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.16 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -69.44 291.97 5.81 -63.63 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.43 Total: 22.85 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 3.46 Total: -14.39 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -1.30 Total: -74.46 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -0.22 Total: -30.68 kcal Atomic # 9 Polarization: -10.81 SS G_CDS: 1.48 Total: -9.33 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 1.96 Total: 42.39 kcal Total: -69.44 5.81 -63.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340565663.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.352 kcal (2) G-P(sol) polarization free energy of solvation -69.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds