Wall clock time and date at job start Tue Mar 31 2020 05:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86794 * 120.00181 * 2 1 4 4 H 1.48502 * 109.47219 * 270.00063 * 3 2 1 5 5 H 1.48497 * 109.47377 * 30.00163 * 3 2 1 6 6 H 1.48499 * 109.47129 * 149.99868 * 3 2 1 7 7 C 1.38638 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99776 * 359.97438 * 7 2 1 9 9 O 1.34804 * 120.00030 * 179.97438 * 7 2 1 10 10 C 1.35778 * 116.99953 * 185.01688 * 9 7 2 11 11 C 1.38741 * 120.08644 * 354.83685 * 10 9 7 12 12 C 1.38345 * 119.97362 * 179.97438 * 11 10 9 13 13 F 1.35105 * 119.91974 * 180.02562 * 12 11 10 14 14 C 1.38547 * 120.15742 * 0.02562 * 12 11 10 15 15 C 1.38191 * 120.17283 * 359.97438 * 14 12 11 16 16 C 1.38706 * 120.02126 * 359.74680 * 15 14 12 17 17 N 1.40095 * 120.07460 * 180.27877 * 16 15 14 18 18 C 1.34772 * 120.00067 * 335.19285 * 17 16 15 19 19 O 1.21292 * 120.00056 * 354.44381 * 18 17 16 20 20 C 1.50701 * 120.00006 * 174.44338 * 18 17 16 21 21 H 1.08996 * 115.54782 * 325.58311 * 20 18 17 22 22 C 1.52999 * 117.50078 * 111.25577 * 20 18 17 23 23 C 1.53001 * 117.50124 * 179.91509 * 20 18 17 24 24 H 1.08991 * 117.50253 * 145.01669 * 23 20 18 25 25 F 1.39903 * 117.49536 * 0.02562 * 23 20 18 26 26 H 0.97006 * 119.99384 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.01321 * 359.95224 * 11 10 9 28 28 H 1.07999 * 119.91395 * 179.97438 * 14 12 11 29 29 H 1.07998 * 119.98544 * 180.02562 * 15 14 12 30 30 H 0.97002 * 119.99951 * 155.19353 * 17 16 15 31 31 H 1.09002 * 117.49866 * 214.98119 * 22 20 18 32 32 H 1.09000 * 117.49581 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4473 2.6526 0.7000 6 1 3.5473 1.4401 0.7001 7 6 2.0089 -1.2007 -0.0005 8 1 1.4688 -2.1360 -0.0005 9 8 3.3569 -1.2007 -0.0011 10 6 3.9733 -2.4058 -0.1074 11 6 3.2237 -3.5733 -0.1014 12 6 3.8540 -4.8000 -0.2104 13 9 3.1230 -5.9362 -0.2049 14 6 5.2332 -4.8661 -0.3251 15 6 5.9859 -3.7072 -0.3317 16 6 5.3610 -2.4732 -0.2287 17 7 6.1226 -1.2974 -0.2412 18 6 7.4137 -1.3266 0.1441 19 8 7.8886 -2.3469 0.5965 20 6 8.2674 -0.0917 0.0126 21 1 8.0507 0.5401 -0.8487 22 6 8.7117 0.6006 1.3026 23 6 9.7246 -0.1883 0.4691 24 1 10.4664 0.3802 -0.0916 25 9 10.1625 -1.4165 0.9761 26 1 -0.4849 0.8401 0.0004 27 1 2.1486 -3.5246 -0.0113 28 1 5.7212 -5.8258 -0.4095 29 1 7.0607 -3.7622 -0.4217 30 1 5.7205 -0.4622 -0.5271 31 1 8.7876 1.6879 1.2899 32 1 8.3861 0.1631 2.2464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340565664.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:13 Heat of formation + Delta-G solvation = -93.878739 kcal Electronic energy + Delta-G solvation = -21695.487939 eV Core-core repulsion = 17873.277475 eV Total energy + Delta-G solvation = -3822.210464 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.30586 -47.58457 -40.37074 -38.92025 -36.74275 -35.75624 -34.26842 -32.54749 -29.67093 -28.79783 -25.55186 -24.71849 -22.66759 -22.31184 -21.50067 -19.96526 -18.37664 -18.12309 -17.69001 -16.93482 -16.14494 -15.60207 -15.42092 -15.22478 -14.97647 -14.62263 -14.57754 -14.16610 -13.88225 -13.73944 -13.55928 -13.37453 -12.84402 -12.47898 -12.42602 -12.32517 -11.92558 -11.55911 -11.02041 -10.85767 -10.64004 -10.51631 -10.31703 -9.94687 -9.77773 -9.45460 -9.04641 -8.01228 -7.26184 -6.58182 -4.25674 1.62849 1.97525 2.53276 3.04724 3.07992 3.11764 3.19807 3.45082 3.87567 4.04903 4.21137 4.37313 4.43283 4.52377 4.74642 4.89337 4.90952 4.95388 5.33606 5.47210 5.56134 5.65837 5.81684 5.86352 6.03521 6.36425 6.65999 6.77444 6.83211 6.91195 7.41341 7.57731 7.69241 7.83182 8.30811 8.74497 9.28775 10.48927 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.012544 B = 0.006726 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.657320 B = 4161.696970 C = 6286.924898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.066 3.934 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.109 0.891 9 O -0.209 6.209 10 C 0.163 3.837 11 C -0.244 4.244 12 C 0.128 3.872 13 F -0.148 7.148 14 C -0.218 4.218 15 C -0.061 4.061 16 C 0.062 3.938 17 N -0.646 5.646 18 C 0.534 3.466 19 O -0.515 6.515 20 C -0.207 4.207 21 H 0.139 0.861 22 C -0.165 4.165 23 C 0.053 3.947 24 H 0.141 0.859 25 F -0.164 7.164 26 H 0.282 0.718 27 H 0.150 0.850 28 H 0.126 0.874 29 H 0.149 0.851 30 H 0.413 0.587 31 H 0.121 0.879 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.893 2.785 -1.390 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.126 0.874 9 O -0.114 6.114 10 C 0.108 3.892 11 C -0.264 4.264 12 C 0.108 3.892 13 F -0.127 7.127 14 C -0.238 4.238 15 C -0.081 4.081 16 C -0.032 4.032 17 N -0.290 5.290 18 C 0.320 3.680 19 O -0.391 6.391 20 C -0.229 4.229 21 H 0.157 0.843 22 C -0.203 4.203 23 C 0.017 3.983 24 H 0.158 0.842 25 F -0.144 7.144 26 H 0.092 0.908 27 H 0.167 0.833 28 H 0.144 0.856 29 H 0.167 0.833 30 H 0.249 0.751 31 H 0.139 0.861 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 15.102 2.391 -1.039 15.325 hybrid contribution -0.501 0.845 -0.139 0.992 sum 14.601 3.236 -1.177 15.001 Atomic orbital electron populations 1.69647 1.05582 1.28748 1.46762 1.24478 0.95055 0.98829 0.95502 0.86209 0.80407 0.81491 0.78955 1.19680 1.20538 1.18333 1.20765 0.76339 0.96900 1.52700 0.87352 1.83497 1.23163 1.24730 1.80006 1.18443 0.89515 0.85912 0.95317 1.20975 1.02111 0.90065 1.13286 1.17477 0.89051 0.81339 1.01362 1.91430 1.77845 1.49417 1.94016 1.20569 0.91502 0.99089 1.12683 1.20788 1.00720 0.89148 0.97453 1.16939 0.87242 0.86608 1.12443 1.43100 1.10395 1.10886 1.64575 1.19465 0.81874 0.88782 0.77855 1.90713 1.72532 1.32453 1.43353 1.22970 0.97618 1.00097 1.02219 0.84295 1.23708 1.00828 1.00544 0.95217 1.21991 0.90516 0.84656 1.01148 0.84214 1.92903 1.90012 1.43751 1.87728 0.90776 0.83270 0.85646 0.83343 0.75096 0.86094 0.86966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.92 13.96 55.48 0.77 -23.14 16 2 C 0.07 1.73 5.49 -17.51 -0.10 1.63 16 3 Si 0.90 19.64 28.62 -169.99 -4.86 14.78 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.39 -10.33 9.94 30.88 0.31 -10.03 16 8 H 0.11 2.98 5.44 -52.48 -0.29 2.69 16 9 O -0.21 -5.00 8.00 0.04 0.00 -5.00 16 10 C 0.16 3.56 6.66 -38.94 -0.26 3.30 16 11 C -0.24 -5.26 9.14 -39.36 -0.36 -5.62 16 12 C 0.13 2.52 7.29 -39.43 -0.29 2.23 16 13 F -0.15 -2.85 17.26 2.25 0.04 -2.81 16 14 C -0.22 -3.95 10.02 -39.48 -0.40 -4.35 16 15 C -0.06 -1.13 8.72 -39.43 -0.34 -1.47 16 16 C 0.06 1.21 6.45 -83.45 -0.54 0.67 16 17 N -0.65 -10.82 5.28 -9.72 -0.05 -10.87 16 18 C 0.53 8.34 7.42 -10.99 -0.08 8.26 16 19 O -0.51 -9.62 12.31 5.55 0.07 -9.55 16 20 C -0.21 -2.23 6.19 -91.77 -0.57 -2.79 16 21 H 0.14 1.06 8.14 -51.93 -0.42 0.64 16 22 C -0.17 -1.51 10.22 -26.70 -0.27 -1.78 16 23 C 0.05 0.52 7.83 -26.69 -0.21 0.32 16 24 H 0.14 0.82 8.14 -51.93 -0.42 0.40 16 25 F -0.16 -2.35 15.71 2.25 0.04 -2.31 16 26 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.15 3.37 5.63 -52.49 -0.30 3.07 16 28 H 0.13 1.96 8.06 -52.49 -0.42 1.53 16 29 H 0.15 2.69 5.79 -52.49 -0.30 2.39 16 30 H 0.41 6.31 8.35 -40.82 -0.34 5.97 16 31 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 292.00 15.07 4.40 4.40 Total: -1.00 -30.34 292.00 -5.18 -35.51 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -2.47 Total: 8.61 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -3.10 Total: -9.63 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.72 Total: -34.01 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.07 Total: -14.55 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.07 Total: -5.12 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.86 Total: 14.78 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.34 -5.18 -35.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340565664.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.364 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds