Wall clock time and date at job start Tue Mar 31 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33526 * 122.71449 * 2 1 4 4 S 1.76185 * 108.05127 * 179.88516 * 3 2 1 5 5 C 1.70961 * 90.33858 * 0.31986 * 4 3 2 6 6 N 1.38751 * 124.94626 * 179.83517 * 5 4 3 7 7 C 1.34777 * 119.99587 * 359.97438 * 6 5 4 8 8 O 1.21384 * 119.99974 * 0.02562 * 7 6 5 9 9 C 1.49306 * 120.00150 * 179.97438 * 7 6 5 10 10 O 1.21365 * 119.99569 * 0.02562 * 9 7 6 11 11 N 1.34777 * 120.00150 * 180.02562 * 9 7 6 12 12 C 1.46499 * 119.99770 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.47117 * 180.02562 * 12 11 9 14 14 C 1.50702 * 109.47662 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99293 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00467 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99803 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00004 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46991 * 90.00126 * 18 16 14 20 20 H 1.48507 * 109.46812 * 209.99808 * 18 16 14 21 21 H 1.48499 * 109.47119 * 329.99912 * 18 16 14 22 22 N 1.29687 * 110.11702 * 359.81421 * 5 4 3 23 23 H 1.09001 * 109.46953 * 269.72823 * 1 2 3 24 24 H 1.09000 * 109.47318 * 29.72421 * 1 2 3 25 25 H 1.09000 * 109.47161 * 149.73051 * 1 2 3 26 26 H 1.08003 * 125.97527 * 359.97269 * 3 2 1 27 27 H 0.96992 * 120.00226 * 179.97438 * 6 5 4 28 28 H 0.96992 * 120.00187 * 0.02562 * 11 9 7 29 29 H 1.09005 * 109.47334 * 300.00072 * 12 11 9 30 30 H 1.08997 * 109.47470 * 60.00030 * 12 11 9 31 31 H 1.09006 * 109.47249 * 299.99852 * 13 12 11 32 32 H 1.08997 * 109.47246 * 59.99501 * 13 12 11 33 33 H 0.96995 * 120.00011 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2287 1.1235 0.0000 4 16 3.9332 0.6775 0.0034 5 6 3.5102 -0.9790 -0.0051 6 7 4.4155 -2.0304 -0.0101 7 6 5.7397 -1.7794 -0.0090 8 8 6.1402 -0.6335 -0.0031 9 6 6.7141 -2.9107 -0.0138 10 8 6.3136 -4.0564 -0.0192 11 7 8.0383 -2.6597 -0.0121 12 6 8.9942 -3.7698 -0.0174 13 6 10.4200 -3.2150 -0.0135 14 6 11.4035 -4.3569 -0.0183 15 1 11.0471 -5.3764 -0.0232 16 6 12.7581 -4.1002 -0.0165 17 7 13.1920 -2.8587 -0.0110 18 14 13.9770 -5.5157 -0.0217 19 1 14.3008 -5.8849 -1.4231 20 1 15.2185 -5.1024 0.6808 21 1 13.3809 -6.6848 0.6732 22 7 2.2200 -1.1099 -0.0057 23 1 -0.3633 -0.0049 1.0277 24 1 -0.3634 0.8924 -0.5095 25 1 -0.3633 -0.8876 -0.5180 26 1 1.8362 2.1296 -0.0004 27 1 4.0955 -2.9460 -0.0144 28 1 8.3583 -1.7441 -0.0074 29 1 8.8416 -4.3849 0.8695 30 1 8.8422 -4.3760 -0.9104 31 1 10.5729 -2.5997 -0.9002 32 1 10.5717 -2.6091 0.8797 33 1 14.1450 -2.6780 -0.0094 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344441721.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:39 Heat of formation + Delta-G solvation = -27.363459 kcal Electronic energy + Delta-G solvation = -18646.280349 eV Core-core repulsion = 15413.087342 eV Total energy + Delta-G solvation = -3233.193007 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.17515 -39.92869 -38.68718 -35.90055 -34.92814 -32.95967 -31.51453 -29.97412 -27.86095 -26.56193 -24.80888 -23.10260 -21.56717 -21.04536 -20.00662 -18.46131 -18.11569 -17.03708 -16.60359 -16.46402 -16.17708 -15.25220 -15.15684 -14.58572 -14.39465 -14.35018 -13.78575 -13.33107 -13.24442 -12.90970 -12.78364 -12.38233 -12.23911 -11.35069 -11.16057 -11.13759 -11.12079 -10.71880 -10.49646 -9.99407 -9.97324 -9.64008 -9.41919 -9.34860 -8.88825 -8.51246 -8.48132 -6.15717 -4.19772 0.37106 0.89611 1.26704 1.61735 1.95541 2.54999 3.09458 3.25747 3.32106 3.34880 3.43373 4.21747 4.33453 4.46232 4.93852 5.06131 5.21484 5.31525 5.35775 5.46024 5.58143 6.00021 6.02848 6.12112 6.32187 6.42654 6.55969 7.10759 7.39271 7.48849 7.50771 7.58670 7.80337 7.99361 8.19836 8.85675 9.45647 10.95704 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.056880 B = 0.002699 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.143821 B =10371.518472 C =10837.913445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.090 3.910 3 C -0.321 4.321 4 S 0.248 5.752 5 C 0.242 3.758 6 N -0.599 5.599 7 C 0.508 3.492 8 O -0.482 6.482 9 C 0.509 3.491 10 O -0.521 6.521 11 N -0.678 5.678 12 C 0.118 3.882 13 C 0.011 3.989 14 C -0.525 4.525 15 H 0.061 0.939 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.899 3.101 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.272 1.272 22 N -0.509 5.509 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.176 0.824 27 H 0.436 0.564 28 H 0.413 0.587 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.685 8.279 0.034 23.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.043 4.043 3 C -0.461 4.461 4 S 0.499 5.501 5 C -0.125 4.125 6 N -0.250 5.250 7 C 0.289 3.711 8 O -0.355 6.355 9 C 0.287 3.713 10 O -0.398 6.398 11 N -0.329 5.329 12 C -0.003 4.003 13 C -0.027 4.027 14 C -0.563 4.563 15 H 0.079 0.921 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.726 3.274 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.197 1.197 22 N -0.233 5.233 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.193 0.807 27 H 0.277 0.723 28 H 0.249 0.751 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.626 8.312 0.041 22.238 hybrid contribution -0.240 -0.770 -0.005 0.806 sum -20.866 7.543 0.037 22.187 Atomic orbital electron populations 1.20357 0.87089 1.03289 1.02939 1.19844 0.97724 0.85869 1.00875 1.27271 0.98518 1.03906 1.16430 1.84992 1.02349 0.95792 1.67017 1.23366 0.90568 0.94498 1.04079 1.42449 1.03933 1.09653 1.69004 1.21003 0.82483 0.90823 0.76823 1.90716 1.77280 1.21945 1.45519 1.19247 0.84006 0.87718 0.80364 1.90797 1.78576 1.21092 1.49311 1.46243 1.04217 1.13248 1.69171 1.22044 0.89318 0.87267 1.01709 1.19370 0.87467 0.97472 0.98361 1.20988 0.90729 0.92657 1.51974 0.92108 1.25000 0.98576 0.95827 0.94844 1.69950 1.14742 1.18423 1.49882 0.86485 0.80452 0.82225 0.78234 1.20515 1.21128 1.19703 1.66134 1.02248 1.32853 1.22053 0.90651 0.90643 0.90650 0.80661 0.72337 0.75135 0.91483 0.91482 0.95564 0.95560 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.31 36.01 0.37 -0.18 16 2 C 0.09 0.94 6.74 -84.20 -0.57 0.38 16 3 C -0.32 -3.04 11.11 29.08 0.32 -2.71 16 4 S 0.25 2.81 20.21 -107.50 -2.17 0.64 16 5 C 0.24 3.08 8.18 -87.54 -0.72 2.37 16 6 N -0.60 -7.48 5.39 -13.55 -0.07 -7.56 16 7 C 0.51 6.99 7.85 -11.65 -0.09 6.90 16 8 O -0.48 -7.01 13.93 5.47 0.08 -6.94 16 9 C 0.51 7.94 7.88 -11.65 -0.09 7.85 16 10 O -0.52 -9.11 16.47 5.48 0.09 -9.02 16 11 N -0.68 -11.17 5.55 -60.78 -0.34 -11.51 16 12 C 0.12 2.29 5.61 -4.04 -0.02 2.27 16 13 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 14 C -0.52 -13.96 9.11 -34.44 -0.31 -14.28 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 18 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 N -0.51 -6.47 10.58 -11.32 -0.12 -6.59 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.18 1.15 8.06 -52.48 -0.42 0.72 16 27 H 0.44 4.95 8.29 -40.82 -0.34 4.62 16 28 H 0.41 6.33 7.94 -40.82 -0.32 6.00 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 310.92 15.07 4.69 4.69 Total: -1.00 -30.23 310.92 -7.07 -37.30 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -3.58 Total: 3.69 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -1.35 Total: 4.23 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 0.21 Total: -50.40 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.17 Total: -15.95 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -2.17 Total: 0.64 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.23 -7.07 -37.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344441721.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.936 kcal (2) G-P(sol) polarization free energy of solvation -30.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds