Wall clock time and date at job start Tue Mar 31 2020 06:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33526 * 122.71449 * 2 1 4 4 S 1.76185 * 108.05127 * 179.88516 * 3 2 1 5 5 C 1.70961 * 90.33858 * 0.31986 * 4 3 2 6 6 N 1.38751 * 124.94626 * 179.83517 * 5 4 3 7 7 C 1.34777 * 119.99587 * 359.97438 * 6 5 4 8 8 O 1.21384 * 119.99974 * 0.02562 * 7 6 5 9 9 C 1.49306 * 120.00150 * 179.97438 * 7 6 5 10 10 O 1.21365 * 119.99569 * 0.02562 * 9 7 6 11 11 N 1.34777 * 120.00150 * 180.02562 * 9 7 6 12 12 C 1.46499 * 119.99770 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.47117 * 180.02562 * 12 11 9 14 14 C 1.50702 * 109.47662 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99293 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00467 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99803 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00004 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46991 * 90.00126 * 18 16 14 20 20 H 1.48507 * 109.46812 * 209.99808 * 18 16 14 21 21 H 1.48499 * 109.47119 * 329.99912 * 18 16 14 22 22 N 1.29687 * 110.11702 * 359.81421 * 5 4 3 23 23 H 1.09001 * 109.46953 * 269.72823 * 1 2 3 24 24 H 1.09000 * 109.47318 * 29.72421 * 1 2 3 25 25 H 1.09000 * 109.47161 * 149.73051 * 1 2 3 26 26 H 1.08003 * 125.97527 * 359.97269 * 3 2 1 27 27 H 0.96992 * 120.00226 * 179.97438 * 6 5 4 28 28 H 0.96992 * 120.00187 * 0.02562 * 11 9 7 29 29 H 1.09005 * 109.47334 * 300.00072 * 12 11 9 30 30 H 1.08997 * 109.47470 * 60.00030 * 12 11 9 31 31 H 1.09006 * 109.47249 * 299.99852 * 13 12 11 32 32 H 1.08997 * 109.47246 * 59.99501 * 13 12 11 33 33 H 0.96995 * 120.00011 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2287 1.1235 0.0000 4 16 3.9332 0.6775 0.0034 5 6 3.5102 -0.9790 -0.0051 6 7 4.4155 -2.0304 -0.0101 7 6 5.7397 -1.7794 -0.0090 8 8 6.1402 -0.6335 -0.0031 9 6 6.7141 -2.9107 -0.0138 10 8 6.3136 -4.0564 -0.0192 11 7 8.0383 -2.6597 -0.0121 12 6 8.9942 -3.7698 -0.0174 13 6 10.4200 -3.2150 -0.0135 14 6 11.4035 -4.3569 -0.0183 15 1 11.0471 -5.3764 -0.0232 16 6 12.7581 -4.1002 -0.0165 17 7 13.1920 -2.8587 -0.0110 18 14 13.9770 -5.5157 -0.0217 19 1 14.3008 -5.8849 -1.4231 20 1 15.2185 -5.1024 0.6808 21 1 13.3809 -6.6848 0.6732 22 7 2.2200 -1.1099 -0.0057 23 1 -0.3633 -0.0049 1.0277 24 1 -0.3634 0.8924 -0.5095 25 1 -0.3633 -0.8876 -0.5180 26 1 1.8362 2.1296 -0.0004 27 1 4.0955 -2.9460 -0.0144 28 1 8.3583 -1.7441 -0.0074 29 1 8.8416 -4.3849 0.8695 30 1 8.8422 -4.3760 -0.9104 31 1 10.5729 -2.5997 -0.9002 32 1 10.5717 -2.6091 0.8797 33 1 14.1450 -2.6780 -0.0094 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344441721.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:37 Heat of formation + Delta-G solvation = -48.954442 kcal Electronic energy + Delta-G solvation = -18647.216604 eV Core-core repulsion = 15413.087342 eV Total energy + Delta-G solvation = -3234.129263 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -42.30184 -40.87287 -39.91810 -37.16030 -36.26623 -34.84636 -32.30426 -31.74752 -28.58022 -27.90875 -26.35366 -24.29413 -22.97543 -22.37699 -21.13325 -19.43184 -19.24398 -18.56799 -17.92425 -17.60036 -17.40781 -16.56544 -16.42633 -16.40107 -15.56703 -15.28783 -15.05389 -14.67705 -14.31236 -14.13098 -13.66669 -13.44774 -13.27163 -13.19967 -12.95342 -12.54384 -12.29354 -12.09006 -12.04501 -11.67773 -11.43232 -10.94872 -10.88433 -10.61795 -10.30677 -10.28821 -9.36173 -8.23243 -6.33848 -0.59159 0.01558 0.19616 0.67004 0.97130 1.44074 1.44352 1.55528 1.61684 1.96114 2.23425 2.43951 3.12297 3.13061 3.44121 4.28952 4.34496 4.36177 4.45306 4.52714 4.81355 4.81672 4.84068 4.89568 4.96630 5.31561 5.37528 5.45617 5.55893 5.76842 6.01635 6.12703 6.29158 6.65761 6.69838 6.81490 7.35769 8.88636 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.056880 B = 0.002699 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.143821 B =10371.518472 C =10837.913445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.068 3.932 3 C -0.299 4.299 4 S 0.238 5.762 5 C 0.215 3.785 6 N -0.591 5.591 7 C 0.519 3.481 8 O -0.491 6.491 9 C 0.517 3.483 10 O -0.537 6.537 11 N -0.678 5.678 12 C 0.137 3.863 13 C 0.018 3.982 14 C -0.544 4.544 15 H 0.065 0.935 16 C 0.005 3.995 17 N -0.927 5.927 18 Si 0.965 3.035 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.264 1.264 22 N -0.522 5.522 23 H 0.085 0.915 24 H 0.099 0.901 25 H 0.070 0.930 26 H 0.209 0.791 27 H 0.439 0.561 28 H 0.418 0.582 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.080 8.525 0.028 24.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.064 4.064 3 C -0.439 4.439 4 S 0.488 5.512 5 C -0.150 4.150 6 N -0.242 5.242 7 C 0.299 3.701 8 O -0.364 6.364 9 C 0.296 3.704 10 O -0.415 6.415 11 N -0.329 5.329 12 C 0.015 3.985 13 C -0.020 4.020 14 C -0.582 4.582 15 H 0.083 0.917 16 C -0.193 4.193 17 N -0.567 5.567 18 Si 0.790 3.210 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.188 1.188 22 N -0.246 5.246 23 H 0.103 0.897 24 H 0.118 0.882 25 H 0.089 0.911 26 H 0.226 0.774 27 H 0.281 0.719 28 H 0.256 0.744 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.068 8.561 0.034 23.670 hybrid contribution 0.059 -0.762 -0.002 0.765 sum -22.009 7.799 0.032 23.350 Atomic orbital electron populations 1.20470 0.84710 1.04325 1.03895 1.20441 0.99289 0.85527 1.01163 1.27626 0.96906 1.05191 1.14198 1.84989 1.04228 0.95216 1.66764 1.23489 0.90768 0.94839 1.05951 1.42258 1.03440 1.10053 1.68435 1.20364 0.82626 0.89852 0.77279 1.90727 1.77563 1.21871 1.46241 1.19400 0.83752 0.88004 0.79267 1.90789 1.78852 1.22060 1.49845 1.46011 1.04386 1.12808 1.69744 1.21570 0.87706 0.87625 1.01627 1.19190 0.89669 0.96433 0.96703 1.21449 0.91678 0.93658 1.51432 0.91664 1.25884 1.00622 0.98322 0.94515 1.70064 1.15193 1.20433 1.51006 0.85437 0.77930 0.79185 0.78446 1.19866 1.20884 1.18801 1.66157 1.02381 1.34316 1.21766 0.89652 0.88202 0.91073 0.77414 0.71930 0.74443 0.91578 0.91552 0.97169 0.97164 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.31 71.24 0.73 -0.13 16 2 C 0.07 1.28 6.74 41.48 0.28 1.56 16 3 C -0.30 -4.89 11.11 66.75 0.74 -4.15 16 4 S 0.24 5.10 20.21 -56.49 -1.14 3.96 16 5 C 0.22 5.33 8.18 179.27 1.47 6.80 16 6 N -0.59 -14.51 5.39 -315.13 -1.70 -16.21 16 7 C 0.52 14.06 7.85 87.22 0.68 14.75 16 8 O -0.49 -14.06 13.93 -3.35 -0.05 -14.10 16 9 C 0.52 15.95 7.88 87.22 0.69 16.63 16 10 O -0.54 -18.56 16.47 -3.29 -0.05 -18.61 16 11 N -0.68 -22.31 5.55 -464.56 -2.58 -24.88 16 12 C 0.14 5.34 5.61 86.38 0.48 5.82 16 13 C 0.02 0.84 5.09 29.85 0.15 1.00 16 14 C -0.54 -29.05 9.11 25.60 0.23 -28.82 16 15 H 0.07 3.35 7.74 -2.91 -0.02 3.32 16 16 C 0.01 0.29 5.46 84.65 0.46 0.76 16 17 N -0.93 -53.60 13.29 21.45 0.28 -53.31 16 18 Si 0.97 42.54 29.54 68.60 2.03 44.57 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 22 N -0.52 -12.68 10.58 -189.74 -2.01 -14.69 16 23 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.10 0.66 8.12 -2.39 -0.02 0.64 16 25 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.21 1.90 8.06 -2.91 -0.02 1.87 16 27 H 0.44 9.87 8.29 -92.71 -0.77 9.10 16 28 H 0.42 12.90 7.94 -92.71 -0.74 12.16 16 29 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 30 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -63.86 310.92 0.38 -63.49 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -0.34 Total: 15.58 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 5.93 Total: 14.22 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -6.00 Total: -109.09 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.10 Total: -32.72 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: 5.10 SS G_CDS: -1.14 Total: 3.96 kcal Total: -63.86 0.38 -63.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344441721.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.534 kcal (2) G-P(sol) polarization free energy of solvation -63.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds