Wall clock time and date at job start Tue Mar 31 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50697 * 109.47477 * 2 1 4 4 C 1.38127 * 119.54259 * 124.99806 * 3 2 1 5 5 C 1.39878 * 119.02665 * 179.72244 * 4 3 2 6 6 C 1.48054 * 120.91939 * 180.29845 * 5 4 3 7 7 O 1.21430 * 119.99708 * 0.02562 * 6 5 4 8 8 O 1.34666 * 120.00122 * 180.02562 * 6 5 4 9 9 C 1.45194 * 117.00268 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.47190 * 329.99433 * 9 8 6 11 11 C 1.52993 * 109.47547 * 89.99669 * 9 8 6 12 12 C 1.50701 * 109.47427 * 210.00046 * 9 8 6 13 13 H 1.08000 * 119.99784 * 359.97438 * 12 9 8 14 14 C 1.37876 * 120.00284 * 179.97438 * 12 9 8 15 15 N 1.31517 * 120.00073 * 359.97438 * 14 12 9 16 16 Si 1.86806 * 120.00070 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.47058 * 89.99803 * 16 14 12 18 18 H 1.48498 * 109.47035 * 209.99988 * 16 14 12 19 19 H 1.48498 * 109.46608 * 329.99867 * 16 14 12 20 20 C 1.39817 * 118.16046 * 0.28401 * 5 4 3 21 21 C 1.38306 * 118.98313 * 359.97438 * 20 5 4 22 22 Cl 1.73602 * 119.56512 * 180.02562 * 21 20 5 23 23 N 1.31826 * 119.53897 * 305.29596 * 3 2 1 24 24 H 1.08994 * 109.47432 * 59.99753 * 1 2 3 25 25 H 1.09000 * 109.47269 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46865 * 299.99755 * 1 2 3 27 27 H 1.09002 * 109.47463 * 239.99963 * 2 1 3 28 28 H 1.09004 * 109.47412 * 120.00361 * 2 1 3 29 29 H 1.08002 * 120.48841 * 0.02562 * 4 3 2 30 30 H 1.09002 * 109.47598 * 300.00188 * 11 9 8 31 31 H 1.09003 * 109.47199 * 60.00225 * 11 9 8 32 32 H 1.09007 * 109.47612 * 180.02562 * 11 9 8 33 33 H 0.97002 * 120.00153 * 179.97438 * 15 14 12 34 34 H 1.08002 * 120.50820 * 180.02562 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9092 1.8331 0.9844 5 6 3.3733 3.1525 0.9707 6 6 4.3191 3.6371 2.0016 7 8 4.7029 2.8854 2.8746 8 8 4.7536 4.9113 1.9710 9 6 5.6800 5.3171 3.0128 10 1 5.4837 4.7421 3.9178 11 6 7.1149 5.0613 2.5474 12 6 5.4998 6.7851 3.3016 13 1 4.7629 7.3562 2.7563 14 6 6.2755 7.3992 4.2618 15 7 7.1725 6.7037 4.9262 16 14 6.0526 9.2191 4.6192 17 1 5.0342 9.3930 5.6860 18 1 7.3444 9.7971 5.0690 19 1 5.6018 9.9139 3.3866 20 6 2.9195 4.0011 -0.0437 21 6 2.0370 3.5063 -0.9866 22 17 1.4644 4.5465 -2.2530 23 7 1.6243 2.2544 -0.9361 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.2356 1.1454 1.7506 30 1 7.2453 3.9994 2.3386 31 1 7.3113 5.6363 1.6425 32 1 7.8104 5.3654 3.3297 33 1 7.7185 7.1358 5.6015 34 1 3.2537 5.0271 -0.0907 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344514556.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:35 Heat of formation + Delta-G solvation = -72.622981 kcal Electronic energy + Delta-G solvation = -19353.408288 eV Core-core repulsion = 16083.916224 eV Total energy + Delta-G solvation = -3269.492065 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.76426 -39.32489 -36.84301 -35.92846 -34.43763 -33.36335 -32.64497 -30.07672 -29.61034 -25.64281 -25.35083 -24.21760 -22.71381 -21.35106 -19.78931 -17.93442 -17.10550 -16.34114 -16.11208 -15.87450 -15.42789 -15.14008 -14.77528 -14.44701 -14.27574 -13.97606 -13.11015 -12.72390 -12.45697 -12.26796 -12.03803 -11.69911 -11.63220 -11.45753 -11.34161 -11.22098 -11.13787 -10.94583 -10.46117 -10.38416 -10.22686 -10.02310 -9.73524 -9.68373 -9.03674 -9.01803 -8.56977 -6.25726 -4.33287 0.49242 0.73647 1.62730 2.81556 3.17549 3.21644 3.27841 3.34631 3.60558 4.01225 4.25708 4.59922 4.68580 4.83471 4.99378 5.04268 5.07903 5.11393 5.30616 5.51449 5.63937 5.68628 5.82675 5.99454 6.04664 6.23668 6.51159 6.78360 6.79331 6.97807 7.47336 7.47631 7.61283 7.79247 8.02488 8.40567 8.75688 9.32449 10.81747 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.021412 B = 0.004106 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.382484 B = 6817.977658 C = 7691.260139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.070 4.070 3 C 0.140 3.860 4 C -0.112 4.112 5 C -0.048 4.048 6 C 0.497 3.503 7 O -0.503 6.503 8 O -0.345 6.345 9 C 0.216 3.784 10 H 0.049 0.951 11 C -0.156 4.156 12 C -0.524 4.524 13 H 0.070 0.930 14 C 0.064 3.936 15 N -0.888 5.888 16 Si 0.913 3.087 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.270 1.270 20 C -0.106 4.106 21 C 0.170 3.830 22 Cl -0.026 7.026 23 N -0.461 5.461 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.156 0.844 30 H 0.017 0.983 31 H 0.039 0.961 32 H 0.102 0.898 33 H 0.267 0.733 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.150 -9.666 -10.685 17.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 C 0.002 3.998 4 C -0.132 4.132 5 C -0.057 4.057 6 C 0.340 3.660 7 O -0.393 6.393 8 O -0.261 6.261 9 C 0.164 3.836 10 H 0.067 0.933 11 C -0.214 4.214 12 C -0.561 4.561 13 H 0.089 0.911 14 C -0.139 4.139 15 N -0.526 5.526 16 Si 0.740 3.260 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.195 1.195 20 C -0.127 4.127 21 C 0.006 3.994 22 Cl 0.002 6.998 23 N -0.173 5.173 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.174 0.826 30 H 0.036 0.964 31 H 0.058 0.942 32 H 0.120 0.880 33 H 0.077 0.923 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.468 -9.997 -10.985 18.171 hybrid contribution 0.615 1.363 0.818 1.705 sum -9.853 -8.634 -10.167 16.583 Atomic orbital electron populations 1.21693 0.93831 1.01901 1.02866 1.20520 0.97247 0.89307 1.03757 1.21098 0.93297 0.95989 0.89464 1.22262 0.96143 0.95333 0.99433 1.19798 0.96918 0.94096 0.94884 1.20724 0.79440 0.82665 0.83190 1.90788 1.55901 1.56796 1.35793 1.86543 1.59189 1.25532 1.54826 1.20771 0.83347 0.95794 0.83691 0.93286 1.22184 0.99889 0.97059 1.02239 1.21002 1.21506 0.92354 1.21288 0.91145 1.24883 0.94589 0.99232 0.95155 1.69893 1.22189 1.36394 1.24118 0.86250 0.77676 0.83300 0.78806 1.20336 1.20887 1.19506 1.22265 0.95453 1.02535 0.92410 1.21469 0.95775 0.90159 0.92009 1.98411 1.88281 1.62879 1.50183 1.66581 1.23882 1.02506 1.24357 0.91492 0.92116 0.92702 0.89525 0.89620 0.82620 0.96438 0.94217 0.88011 0.92279 0.81835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.77 37.15 0.36 -0.83 16 2 C -0.07 -0.61 6.33 -27.89 -0.18 -0.79 16 3 C 0.14 1.69 6.18 -82.64 -0.51 1.18 16 4 C -0.11 -1.51 9.28 -39.01 -0.36 -1.87 16 5 C -0.05 -0.77 5.91 -104.67 -0.62 -1.39 16 6 C 0.50 10.18 7.90 34.76 0.27 10.46 16 7 O -0.50 -11.37 15.70 -19.21 -0.30 -11.67 16 8 O -0.35 -7.92 9.22 -40.40 -0.37 -8.29 16 9 C 0.22 5.63 2.56 -27.89 -0.07 5.56 16 10 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 11 C -0.16 -3.85 9.33 37.15 0.35 -3.50 16 12 C -0.52 -14.31 8.90 -34.44 -0.31 -14.62 16 13 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 14 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 15 N -0.89 -24.68 11.32 55.43 0.63 -24.05 16 16 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 C -0.11 -1.56 9.47 -38.97 -0.37 -1.93 16 21 C 0.17 2.33 7.27 -17.49 -0.13 2.20 16 22 Cl -0.03 -0.32 29.10 -51.86 -1.51 -1.83 16 23 N -0.46 -6.15 9.81 -6.67 -0.07 -6.22 16 24 H 0.07 0.62 7.94 -51.93 -0.41 0.20 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.48 8.14 -51.92 -0.42 0.05 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 0.60 7.87 -51.93 -0.41 0.19 16 29 H 0.16 1.92 7.63 -52.49 -0.40 1.51 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.10 2.68 6.07 -51.93 -0.32 2.37 16 33 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.16 2.35 7.71 -52.49 -0.40 1.94 16 LS Contribution 315.42 15.07 4.75 4.75 Total: -1.00 -29.28 315.42 -7.51 -36.79 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -3.97 Total: -1.22 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -1.65 Total: -3.90 kcal Atomic # 7 Polarization: -30.84 SS G_CDS: 0.56 Total: -30.27 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.67 Total: -19.96 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.51 Total: -1.83 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.28 -7.51 -36.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344514556.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.830 kcal (2) G-P(sol) polarization free energy of solvation -29.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds