Wall clock time and date at job start Tue Mar 31 2020 05:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99600 * 2 1 4 4 H 1.48501 * 109.47349 * 240.00020 * 3 2 1 5 5 H 1.48500 * 109.47204 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46992 * 120.00288 * 3 2 1 7 7 C 1.37871 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00311 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00051 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46853 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46853 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99915 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99885 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99816 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47080 * 179.97438 * 14 13 11 16 16 N 1.28643 * 124.71794 * 89.99817 * 15 14 13 17 17 C 1.33564 * 115.76554 * 179.97438 * 16 15 14 18 18 C 1.47265 * 123.14160 * 179.97438 * 17 16 15 19 19 N 1.34781 * 119.99996 * 359.97438 * 18 17 16 20 20 O 1.21627 * 120.00000 * 179.97438 * 18 17 16 21 21 C 1.35198 * 113.71708 * 0.02562 * 17 16 15 22 22 S 1.70771 * 124.71987 * 269.95730 * 15 14 13 23 23 H 0.96997 * 120.00368 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47229 * 60.00413 * 9 7 2 25 25 H 1.08995 * 109.46853 * 299.99656 * 9 7 2 26 26 H 1.08997 * 109.46897 * 60.00172 * 10 9 7 27 27 H 1.08995 * 109.47079 * 299.99479 * 10 9 7 28 28 H 0.96990 * 120.00039 * 359.97438 * 13 11 10 29 29 H 1.09004 * 109.47603 * 59.99284 * 14 13 11 30 30 H 1.09004 * 109.46939 * 299.99706 * 14 13 11 31 31 H 0.96999 * 120.00160 * 359.97438 * 19 18 17 32 32 H 0.97000 * 119.99989 * 179.97438 * 19 18 17 33 33 H 1.08004 * 125.58973 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1660 -6.1343 -0.0008 14 6 1.4336 -7.4031 -0.0019 15 6 2.4129 -8.5485 -0.0018 16 7 2.8883 -9.1059 1.0556 17 6 3.7454 -10.1089 0.8479 18 6 4.3866 -10.8595 1.9408 19 7 4.1175 -10.5441 3.2233 20 8 5.1588 -11.7639 1.6860 21 6 3.9703 -10.3701 -0.4594 22 16 3.0452 -9.2877 -1.4054 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5568 -0.8903 25 1 0.6249 -2.5571 0.8897 26 1 2.8721 -3.6042 0.8894 27 1 2.8721 -3.6043 -0.8905 28 1 3.1359 -6.1343 -0.0004 29 1 0.8077 -7.4606 -0.8926 30 1 0.8059 -7.4611 0.8874 31 1 3.5019 -9.8226 3.4264 32 1 4.5395 -11.0387 3.9431 33 1 4.6267 -11.1371 -0.8433 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347866783.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:01 Heat of formation + Delta-G solvation = -44.866863 kcal Electronic energy + Delta-G solvation = -18519.652798 eV Core-core repulsion = 15285.700786 eV Total energy + Delta-G solvation = -3233.952012 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.86426 -39.34358 -38.72281 -34.90363 -33.98288 -33.48269 -31.56183 -30.78351 -27.98705 -25.99090 -25.13055 -22.20309 -21.45163 -20.22504 -19.84355 -19.01515 -17.84084 -17.01906 -16.35121 -16.19809 -15.86306 -15.45164 -15.32807 -14.93510 -14.45132 -14.26308 -14.03417 -13.54369 -13.12909 -12.97744 -12.35185 -12.19065 -12.03420 -11.20237 -10.92655 -10.71137 -10.64119 -10.32967 -10.16835 -10.08630 -9.98894 -9.72751 -9.54899 -9.19988 -9.04165 -8.99462 -8.33691 -5.97909 -4.02543 0.02343 0.75490 1.17396 1.44900 2.93350 3.08941 3.14044 3.33362 3.37856 3.39135 3.43684 3.67259 4.34723 4.46125 4.74163 4.80316 5.07886 5.34839 5.37079 5.44324 5.65390 6.17564 6.19189 6.34573 6.45510 6.79386 6.83923 7.09857 7.69695 7.72496 7.83036 7.83297 8.04533 8.35488 8.64299 9.05563 9.61169 11.12958 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.030276 B = 0.002784 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.589141 B =10054.964809 C =10357.033827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.514 3.486 12 O -0.530 6.530 13 N -0.741 5.741 14 C 0.198 3.802 15 C 0.008 3.992 16 N -0.428 5.428 17 C -0.001 4.001 18 C 0.603 3.397 19 N -0.836 5.836 20 O -0.541 6.541 21 C -0.224 4.224 22 S 0.251 5.749 23 H 0.262 0.738 24 H 0.024 0.976 25 H 0.024 0.976 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.399 0.601 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.413 0.587 32 H 0.406 0.594 33 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.973 -22.024 -0.038 23.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.169 4.169 11 C 0.303 3.697 12 O -0.404 6.404 13 N -0.397 5.397 14 C 0.071 3.929 15 C -0.272 4.272 16 N -0.145 5.145 17 C -0.137 4.137 18 C 0.385 3.615 19 N -0.399 5.399 20 O -0.418 6.418 21 C -0.367 4.367 22 S 0.508 5.492 23 H 0.071 0.929 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.233 0.767 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.243 0.757 32 H 0.237 0.763 33 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 7.040 -22.073 -0.904 23.186 hybrid contribution 1.284 0.443 1.213 1.821 sum 8.325 -21.630 0.309 23.179 Atomic orbital electron populations 1.69982 1.06050 1.26745 1.50043 1.25018 0.94828 0.99222 0.95264 0.86652 0.79548 0.83162 0.78556 1.20244 1.21280 1.20248 1.21178 0.92906 0.91007 1.51612 0.92643 1.18907 0.93150 0.89294 0.98695 1.21886 1.00784 0.91505 1.02688 1.21634 0.88670 0.85262 0.74147 1.90692 1.14348 1.87412 1.47950 1.46230 1.10201 1.04568 1.78702 1.19679 0.90282 0.78242 1.04687 1.27149 1.04370 1.03665 0.91974 1.66927 1.08858 1.07177 1.31497 1.20335 1.01428 0.98411 0.93481 1.17027 0.80144 0.81872 0.82453 1.43627 1.49688 1.39716 1.06833 1.90865 1.36143 1.30753 1.84008 1.26769 1.06380 1.06445 0.97130 1.83160 1.33151 1.22472 1.10408 0.92861 0.95740 0.95757 0.90059 0.90063 0.76664 0.89166 0.88443 0.75724 0.76277 0.79128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 10 C -0.13 -2.47 5.64 -27.88 -0.16 -2.63 16 11 C 0.51 9.14 7.83 -10.98 -0.09 9.06 16 12 O -0.53 -11.65 15.98 5.55 0.09 -11.56 16 13 N -0.74 -9.38 5.55 -61.47 -0.34 -9.72 16 14 C 0.20 2.17 6.24 -5.19 -0.03 2.14 16 15 C 0.01 0.07 6.71 -13.61 -0.09 -0.02 16 16 N -0.43 -4.40 10.12 -8.51 -0.09 -4.48 16 17 C 0.00 -0.01 6.70 -84.53 -0.57 -0.57 16 18 C 0.60 6.44 8.07 -12.59 -0.10 6.34 16 19 N -0.84 -6.26 8.87 30.40 0.27 -5.99 16 20 O -0.54 -7.29 17.55 5.25 0.09 -7.20 16 21 C -0.22 -1.89 10.62 29.65 0.31 -1.58 16 22 S 0.25 1.79 22.92 -107.50 -2.46 -0.68 16 23 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 27 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.40 4.15 8.46 -40.82 -0.35 3.80 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.41 2.72 8.35 -40.82 -0.34 2.38 16 32 H 0.41 2.27 8.93 -40.82 -0.36 1.90 16 33 H 0.19 1.35 8.03 -52.48 -0.42 0.93 16 LS Contribution 314.36 15.07 4.74 4.74 Total: -1.00 -35.49 314.36 -6.78 -42.27 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -3.55 Total: 2.43 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -1.25 Total: 0.14 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.58 Total: -46.50 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: 0.18 Total: -18.76 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.46 Total: -0.68 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.49 -6.78 -42.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347866783.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.594 kcal (2) G-P(sol) polarization free energy of solvation -35.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds