Wall clock time and date at job start Tue Mar 31 2020 05:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99600 * 2 1 4 4 H 1.48501 * 109.47349 * 240.00020 * 3 2 1 5 5 H 1.48500 * 109.47204 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46992 * 120.00288 * 3 2 1 7 7 C 1.37871 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00311 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00051 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46853 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46853 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99915 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99885 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99816 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47080 * 179.97438 * 14 13 11 16 16 N 1.28643 * 124.71794 * 89.99817 * 15 14 13 17 17 C 1.33564 * 115.76554 * 179.97438 * 16 15 14 18 18 C 1.47265 * 123.14160 * 179.97438 * 17 16 15 19 19 N 1.34781 * 119.99996 * 359.97438 * 18 17 16 20 20 O 1.21627 * 120.00000 * 179.97438 * 18 17 16 21 21 C 1.35198 * 113.71708 * 0.02562 * 17 16 15 22 22 S 1.70771 * 124.71987 * 269.95730 * 15 14 13 23 23 H 0.96997 * 120.00368 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47229 * 60.00413 * 9 7 2 25 25 H 1.08995 * 109.46853 * 299.99656 * 9 7 2 26 26 H 1.08997 * 109.46897 * 60.00172 * 10 9 7 27 27 H 1.08995 * 109.47079 * 299.99479 * 10 9 7 28 28 H 0.96990 * 120.00039 * 359.97438 * 13 11 10 29 29 H 1.09004 * 109.47603 * 59.99284 * 14 13 11 30 30 H 1.09004 * 109.46939 * 299.99706 * 14 13 11 31 31 H 0.96999 * 120.00160 * 359.97438 * 19 18 17 32 32 H 0.97000 * 119.99989 * 179.97438 * 19 18 17 33 33 H 1.08004 * 125.58973 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1660 -6.1343 -0.0008 14 6 1.4336 -7.4031 -0.0019 15 6 2.4129 -8.5485 -0.0018 16 7 2.8883 -9.1059 1.0556 17 6 3.7454 -10.1089 0.8479 18 6 4.3866 -10.8595 1.9408 19 7 4.1175 -10.5441 3.2233 20 8 5.1588 -11.7639 1.6860 21 6 3.9703 -10.3701 -0.4594 22 16 3.0452 -9.2877 -1.4054 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5568 -0.8903 25 1 0.6249 -2.5571 0.8897 26 1 2.8721 -3.6042 0.8894 27 1 2.8721 -3.6043 -0.8905 28 1 3.1359 -6.1343 -0.0004 29 1 0.8077 -7.4606 -0.8926 30 1 0.8059 -7.4611 0.8874 31 1 3.5019 -9.8226 3.4264 32 1 4.5395 -11.0387 3.9431 33 1 4.6267 -11.1371 -0.8433 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347866783.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:01 Heat of formation + Delta-G solvation = -74.891656 kcal Electronic energy + Delta-G solvation = -18520.954770 eV Core-core repulsion = 15285.700786 eV Total energy + Delta-G solvation = -3235.253985 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.61755 -40.66162 -39.60623 -36.11043 -35.49395 -34.71570 -33.11558 -32.01951 -29.07802 -27.40606 -26.29358 -23.69528 -22.61200 -21.28478 -20.91722 -19.79126 -18.79633 -18.52195 -17.54640 -17.29391 -16.99627 -16.63209 -16.47560 -16.27551 -15.85185 -15.19054 -14.93980 -14.80676 -14.41031 -14.13224 -14.02990 -13.46951 -13.20459 -12.99826 -12.75280 -12.49667 -11.86789 -11.61251 -11.54149 -11.29287 -11.06940 -10.94517 -10.80976 -10.68986 -10.53229 -10.17008 -10.04504 -8.15253 -6.28764 -0.66460 0.10673 0.50574 0.67476 1.44381 1.48203 1.55890 1.71580 2.09975 2.31415 2.43528 2.50681 2.88227 3.17933 3.58999 4.05058 4.10550 4.15802 4.27939 4.52118 4.59820 4.62457 4.71847 5.11444 5.32138 5.53988 5.68504 5.71962 5.89417 6.10436 6.21102 6.41146 6.52768 6.89877 7.14734 7.30091 7.41410 8.97013 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.030276 B = 0.002784 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.589141 B =10054.964809 C =10357.033827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.971 3.029 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.041 3.959 10 C -0.119 4.119 11 C 0.520 3.480 12 O -0.580 6.580 13 N -0.716 5.716 14 C 0.200 3.800 15 C -0.016 4.016 16 N -0.437 5.437 17 C -0.023 4.023 18 C 0.599 3.401 19 N -0.821 5.821 20 O -0.577 6.577 21 C -0.224 4.224 22 S 0.329 5.671 23 H 0.262 0.738 24 H -0.014 1.014 25 H -0.017 1.017 26 H 0.103 0.897 27 H 0.108 0.892 28 H 0.415 0.585 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.418 0.582 32 H 0.415 0.585 33 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.196 -22.368 -0.717 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.795 3.205 4 H -0.187 1.187 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.093 0.907 9 C 0.004 3.996 10 C -0.159 4.159 11 C 0.308 3.692 12 O -0.459 6.459 13 N -0.371 5.371 14 C 0.074 3.926 15 C -0.294 4.294 16 N -0.154 5.154 17 C -0.159 4.159 18 C 0.381 3.619 19 N -0.383 5.383 20 O -0.457 6.457 21 C -0.368 4.368 22 S 0.587 5.413 23 H 0.071 0.929 24 H 0.005 0.995 25 H 0.002 0.998 26 H 0.121 0.879 27 H 0.126 0.874 28 H 0.251 0.749 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.249 0.751 32 H 0.248 0.752 33 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 9.310 -22.442 -1.560 24.346 hybrid contribution 0.587 0.454 1.393 1.578 sum 9.897 -21.988 -0.167 24.113 Atomic orbital electron populations 1.70160 1.08220 1.27816 1.51505 1.26096 0.95694 1.03805 0.94743 0.85419 0.78083 0.77592 0.79420 1.18694 1.21456 1.18857 1.21704 0.93999 0.91722 1.50721 0.90674 1.18697 0.93735 0.92275 0.94927 1.21644 0.99364 0.89913 1.04993 1.21248 0.87770 0.86223 0.73948 1.90683 1.16387 1.88152 1.50713 1.45863 1.10905 1.03966 1.76383 1.19666 0.90543 0.77686 1.04754 1.26852 1.05093 1.03971 0.93500 1.66868 1.08879 1.07300 1.32375 1.20317 1.02408 0.99128 0.94027 1.17204 0.79822 0.81549 0.83322 1.43547 1.49043 1.39413 1.06335 1.90840 1.37894 1.32363 1.84592 1.27099 1.06008 1.06592 0.97058 1.82926 1.30761 1.20178 1.07461 0.92890 0.99547 0.99846 0.87907 0.87432 0.74859 0.88230 0.89544 0.75053 0.75225 0.77924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.57 13.29 21.45 0.28 -58.29 16 2 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 3 Si 0.97 43.58 29.54 68.60 2.03 45.61 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.54 -30.22 9.11 25.60 0.23 -29.98 16 8 H 0.08 3.79 7.74 -2.91 -0.02 3.76 16 9 C 0.04 2.22 4.26 29.85 0.13 2.35 16 10 C -0.12 -4.48 5.64 29.85 0.17 -4.31 16 11 C 0.52 18.24 7.83 87.66 0.69 18.93 16 12 O -0.58 -26.24 15.98 -3.05 -0.05 -26.29 16 13 N -0.72 -16.88 5.55 -466.77 -2.59 -19.47 16 14 C 0.20 4.10 6.24 85.63 0.53 4.63 16 15 C -0.02 -0.26 6.71 88.58 0.59 0.33 16 16 N -0.44 -8.28 10.12 -180.84 -1.83 -10.11 16 17 C -0.02 -0.42 6.70 40.55 0.27 -0.15 16 18 C 0.60 12.26 8.07 86.62 0.70 12.96 16 19 N -0.82 -11.52 8.87 -175.99 -1.56 -13.08 16 20 O -0.58 -15.27 17.55 -4.12 -0.07 -15.34 16 21 C -0.22 -3.26 10.62 67.12 0.71 -2.55 16 22 S 0.33 3.70 22.92 -56.49 -1.29 2.41 16 23 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 24 H -0.01 -0.84 8.10 -2.39 -0.02 -0.86 16 25 H -0.02 -1.03 8.10 -2.39 -0.02 -1.05 16 26 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 27 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 28 H 0.41 7.43 8.46 -92.72 -0.78 6.64 16 29 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.42 5.08 8.35 -92.71 -0.77 4.31 16 32 H 0.42 4.26 8.93 -92.71 -0.83 3.43 16 33 H 0.20 2.40 8.03 -2.91 -0.02 2.38 16 Total: -1.00 -79.56 314.36 -1.79 -81.36 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -1.20 Total: 10.87 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 4.49 Total: 2.34 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -5.70 Total: -100.95 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: -0.12 Total: -41.63 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.29 Total: 2.41 kcal Total: -79.56 -1.79 -81.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347866783.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.467 kcal (2) G-P(sol) polarization free energy of solvation -79.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds