Wall clock time and date at job start Tue Mar 31 2020 05:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99684 * 2 1 4 4 H 1.48501 * 109.47239 * 274.99629 * 3 2 1 5 5 H 1.48493 * 109.47384 * 34.99747 * 3 2 1 6 6 H 1.48497 * 109.47157 * 155.00155 * 3 2 1 7 7 C 1.37869 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99563 * 184.92681 * 7 2 1 9 9 C 1.50701 * 120.00506 * 4.92912 * 7 2 1 10 10 O 1.42904 * 110.88307 * 298.62934 * 9 7 2 11 11 C 1.55155 * 111.00400 * 174.75214 * 9 7 2 12 12 C 1.54319 * 102.93986 * 206.38126 * 11 9 7 13 13 N 1.47021 * 107.27358 * 22.19518 * 12 11 9 14 14 C 1.34776 * 125.65256 * 181.01996 * 13 12 11 15 15 O 1.21754 * 119.99960 * 180.02562 * 14 13 12 16 16 C 1.46229 * 119.99705 * 0.02562 * 14 13 12 17 17 C 1.36778 * 126.79640 * 179.97438 * 16 14 13 18 18 N 1.33086 * 108.17619 * 180.26661 * 17 16 14 19 19 C 1.31848 * 109.83533 * 359.61996 * 18 17 16 20 20 S 1.76203 * 125.58553 * 180.14686 * 19 18 17 21 21 N 1.35791 * 108.82810 * 0.38336 * 19 18 17 22 22 H 0.96999 * 126.62844 * 179.74921 * 21 19 18 23 23 C 1.47428 * 108.69892 * 1.28636 * 13 12 11 24 24 H 0.96999 * 120.00321 * 0.02562 * 1 2 3 25 25 H 0.96704 * 113.99490 * 56.11919 * 10 9 7 26 26 H 1.09006 * 110.71947 * 88.02433 * 11 9 7 27 27 H 1.09001 * 110.72257 * 324.74929 * 11 9 7 28 28 H 1.08999 * 109.88508 * 262.77207 * 12 11 9 29 29 H 1.09006 * 110.00907 * 141.68552 * 12 11 9 30 30 H 1.07997 * 125.90979 * 0.02562 * 17 16 14 31 31 H 1.40993 * 99.99876 * 270.27347 * 20 19 18 32 32 H 1.09004 * 110.36960 * 94.48041 * 23 13 12 33 33 H 1.08998 * 110.36332 * 216.80376 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3910 2.1075 -1.3948 5 1 1.5034 2.6199 0.8029 6 1 3.5955 1.4121 0.5917 7 6 2.0045 -1.1940 0.0005 8 1 3.0816 -1.1957 0.0809 9 6 1.2552 -2.4968 -0.1110 10 8 0.3617 -2.6666 0.9913 11 6 2.2354 -3.6944 -0.2219 12 6 1.4060 -4.7506 -0.9821 13 7 0.3486 -4.0341 -1.7101 14 6 -0.5997 -4.6038 -2.4799 15 8 -1.4289 -3.9089 -3.0385 16 6 -0.6325 -6.0564 -2.6443 17 6 -1.5268 -6.7768 -3.3874 18 7 -1.2188 -8.0664 -3.2720 19 6 -0.1627 -8.2064 -2.4952 20 16 0.5993 -9.7362 -2.0665 21 7 0.2385 -6.9788 -2.0756 22 1 0.9878 -6.7832 -1.4916 23 6 0.5012 -2.5886 -1.4635 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2699 -1.9425 1.1006 26 1 2.5114 -4.0597 0.7674 27 1 3.1215 -3.4160 -0.7924 28 1 0.9606 -5.4510 -0.2757 29 1 2.0417 -5.2881 -1.6859 30 1 -2.3439 -6.3698 -3.9644 31 1 -0.1285 -10.0542 -0.9016 32 1 1.0868 -2.1277 -2.2590 33 1 -0.4759 -2.1119 -1.3857 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349468380.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:33 Heat of formation + Delta-G solvation = -34.677465 kcal Electronic energy + Delta-G solvation = -20272.335832 eV Core-core repulsion = 17038.825665 eV Total energy + Delta-G solvation = -3233.510166 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.25396 -40.86211 -38.96407 -36.31759 -34.22941 -34.00986 -32.15065 -31.03068 -29.70751 -27.29808 -25.35854 -23.44438 -22.82945 -21.89830 -21.49102 -19.29928 -19.16674 -18.42140 -17.41927 -17.30696 -17.04689 -16.61828 -16.20015 -16.06883 -15.36158 -14.95779 -14.92549 -14.78450 -14.68076 -13.89574 -13.53937 -13.37515 -12.89634 -12.65330 -12.42427 -12.39019 -12.27669 -12.20078 -11.76387 -11.46355 -11.39382 -11.22170 -10.68594 -10.39433 -10.02308 -9.59616 -9.44562 -8.29304 -6.45809 -0.24803 0.01588 1.06729 1.41176 1.44977 1.53859 1.61607 1.77425 2.01058 2.10147 2.37125 2.97815 3.29586 3.59916 3.67595 3.99043 4.02169 4.05976 4.12618 4.31718 4.39090 4.64226 4.93312 4.97305 5.10719 5.20956 5.30490 5.40964 5.72278 5.79036 5.99525 6.31741 6.46624 6.63200 6.86942 7.24624 7.33938 8.76487 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.033909 B = 0.004254 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.536346 B = 6580.405895 C = 7086.909058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.028 3.972 3 Si 0.963 3.037 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.557 4.557 8 H 0.073 0.927 9 C 0.233 3.767 10 O -0.590 6.590 11 C -0.109 4.109 12 C 0.090 3.910 13 N -0.608 5.608 14 C 0.593 3.407 15 O -0.572 6.572 16 C -0.057 4.057 17 C 0.062 3.938 18 N -0.468 5.468 19 C 0.201 3.799 20 S 0.001 5.999 21 N -0.521 5.521 22 H 0.439 0.561 23 C 0.106 3.894 24 H 0.271 0.729 25 H 0.377 0.623 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.197 0.803 31 H 0.128 0.872 32 H 0.053 0.947 33 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.597 -15.514 -1.443 16.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.173 4.173 3 Si 0.788 3.212 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.596 4.596 8 H 0.091 0.909 9 C 0.192 3.808 10 O -0.399 6.399 11 C -0.146 4.146 12 C -0.032 4.032 13 N -0.339 5.339 14 C 0.382 3.618 15 O -0.452 6.452 16 C -0.177 4.177 17 C -0.096 4.096 18 N -0.189 5.189 19 C -0.170 4.170 20 S 0.152 5.848 21 N -0.134 5.134 22 H 0.287 0.713 23 C -0.016 4.016 24 H 0.080 0.920 25 H 0.227 0.773 26 H 0.111 0.889 27 H 0.116 0.884 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.214 0.786 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.464 -17.033 -2.004 17.721 hybrid contribution -0.597 3.364 0.989 3.557 sum 3.867 -13.669 -1.014 14.241 Atomic orbital electron populations 1.69737 1.07246 1.28599 1.49952 1.25807 0.95664 1.02837 0.92977 0.85458 0.78923 0.78780 0.77994 1.20384 1.21130 1.18759 1.21813 0.94473 0.91090 1.52182 0.90901 1.19896 0.86198 0.93282 0.81416 1.86058 1.51297 1.50479 1.52074 1.22631 0.97447 0.93474 1.01091 1.22424 0.89151 0.96163 0.95459 1.48698 1.29200 1.09710 1.46334 1.16745 0.80650 0.85447 0.78913 1.90835 1.40545 1.63517 1.50308 1.21210 0.99155 0.89605 1.07753 1.22981 0.99451 0.88111 0.99053 1.70776 1.12331 1.18950 1.16831 1.25094 0.98533 0.90946 1.02416 1.87037 1.46153 1.14275 1.37379 1.44768 1.25610 1.05746 1.37307 0.71347 1.22988 1.00641 0.78170 0.99834 0.91994 0.77258 0.88873 0.88435 0.90530 0.88637 0.78631 0.90808 0.92840 0.93395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.30 10.71 21.45 0.23 -48.07 16 2 C 0.03 1.42 5.26 84.65 0.44 1.86 16 3 Si 0.96 40.18 29.54 68.60 2.03 42.21 16 4 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.56 -27.38 8.26 25.60 0.21 -27.17 16 8 H 0.07 3.43 7.79 -2.91 -0.02 3.41 16 9 C 0.23 10.51 0.89 -10.07 -0.01 10.51 16 10 O -0.59 -28.92 13.20 -148.98 -1.97 -30.89 16 11 C -0.11 -3.64 6.12 31.78 0.19 -3.45 16 12 C 0.09 2.59 5.12 86.73 0.44 3.03 16 13 N -0.61 -23.31 3.32 -816.54 -2.71 -26.02 16 14 C 0.59 23.19 7.81 86.32 0.67 23.86 16 15 O -0.57 -26.73 17.15 -4.52 -0.08 -26.81 16 16 C -0.06 -1.75 6.89 39.74 0.27 -1.48 16 17 C 0.06 1.84 11.62 84.16 0.98 2.81 16 18 N -0.47 -13.02 11.22 -195.44 -2.19 -15.21 16 19 C 0.20 4.66 8.51 179.63 1.53 6.19 16 20 S 0.00 0.01 26.28 -56.49 -1.48 -1.48 16 21 N -0.52 -12.29 5.74 -183.66 -1.06 -13.34 16 22 H 0.44 8.19 5.14 -92.71 -0.48 7.72 16 23 C 0.11 4.92 5.52 86.93 0.48 5.40 16 24 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 25 H 0.38 19.76 7.18 -74.05 -0.53 19.23 16 26 H 0.09 2.86 8.14 -2.38 -0.02 2.84 16 27 H 0.10 2.97 8.03 -2.39 -0.02 2.96 16 28 H 0.08 1.93 7.10 -2.39 -0.02 1.92 16 29 H 0.10 2.03 7.24 -2.38 -0.02 2.01 16 30 H 0.20 5.32 8.06 -2.91 -0.02 5.30 16 31 H 0.13 1.41 9.55 73.80 0.70 2.11 16 32 H 0.05 2.55 8.04 -2.39 -0.02 2.53 16 33 H 0.05 2.59 7.50 -2.39 -0.02 2.57 16 Total: -1.00 -63.21 296.57 -1.13 -64.34 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: 0.89 Total: 33.70 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: 5.22 Total: 21.58 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -5.73 Total: -102.64 kcal Atomic # 8 Polarization: -55.65 SS G_CDS: -2.04 Total: -57.70 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -1.48 Total: -1.48 kcal Total: -63.21 -1.13 -64.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349468380.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.658 kcal (2) G-P(sol) polarization free energy of solvation -63.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds