Wall clock time and date at job start Tue Mar 31 2020 05:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00134 * 2 1 4 4 H 1.48495 * 109.47397 * 240.00125 * 3 2 1 5 5 H 1.48501 * 109.46768 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47267 * 119.99578 * 3 2 1 7 7 C 1.37876 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00102 * 172.23120 * 7 2 1 9 9 C 1.50700 * 119.99863 * 352.22587 * 7 2 1 10 10 C 1.53007 * 115.54854 * 84.78912 * 9 7 2 11 11 S 1.81389 * 109.47309 * 65.19124 * 10 9 7 12 12 O 1.42102 * 110.54545 * 62.18644 * 11 10 9 13 13 O 1.42101 * 110.54523 * 285.43298 * 11 10 9 14 14 N 1.65601 * 104.44936 * 173.81201 * 11 10 9 15 15 C 1.46498 * 120.00315 * 64.72563 * 14 11 10 16 16 C 1.52993 * 109.47472 * 165.27589 * 15 14 11 17 17 C 1.53001 * 109.47280 * 179.97438 * 16 15 14 18 18 F 1.39907 * 109.46965 * 64.99710 * 17 16 15 19 19 F 1.39897 * 109.47366 * 185.00009 * 17 16 15 20 20 C 1.53002 * 117.49864 * 230.45136 * 9 7 2 21 21 C 1.52995 * 117.50288 * 299.11504 * 9 7 2 22 22 H 0.97003 * 120.00122 * 5.02948 * 1 2 3 23 23 H 1.09006 * 109.46528 * 305.19109 * 10 9 7 24 24 H 1.09002 * 109.46643 * 185.19570 * 10 9 7 25 25 H 0.97001 * 119.99933 * 244.99699 * 14 11 10 26 26 H 1.08997 * 109.46924 * 285.28107 * 15 14 11 27 27 H 1.08999 * 109.46737 * 45.27163 * 15 14 11 28 28 H 1.09004 * 109.47369 * 299.99805 * 16 15 14 29 29 H 1.08999 * 109.47488 * 60.00034 * 16 15 14 30 30 H 1.08998 * 109.47274 * 305.00441 * 17 16 15 31 31 H 1.08996 * 117.49740 * 215.00232 * 20 9 7 32 32 H 1.09000 * 117.49983 * 0.03008 * 20 9 7 33 33 H 1.09000 * 117.49768 * 359.97438 * 21 9 7 34 34 H 1.09001 * 117.49907 * 144.97353 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0771 -1.1984 -0.1259 9 6 1.2614 -2.4930 0.1777 10 6 0.6669 -3.0925 -1.0984 11 16 2.0070 -3.5643 -2.2261 12 8 2.8267 -4.5639 -1.6360 13 8 2.5776 -2.4126 -2.8321 14 7 1.2436 -4.3449 -3.4713 15 6 0.3129 -3.6129 -4.3339 16 6 0.0345 -4.4325 -5.5954 17 6 -0.9380 -3.6682 -6.4959 18 9 -0.3300 -2.4912 -6.9458 19 9 -1.2813 -4.4648 -7.5935 20 6 1.7806 -3.4648 1.2393 21 6 0.4827 -2.6897 1.4798 22 1 -0.4850 0.8368 -0.0736 23 1 0.0274 -2.3544 -1.5827 24 1 0.0776 -3.9738 -0.8454 25 1 1.4097 -5.2878 -3.6270 26 1 -0.6209 -3.4419 -3.7982 27 1 0.7525 -2.6552 -4.6124 28 1 0.9684 -4.6034 -6.1311 29 1 -0.4051 -5.3902 -5.3169 30 1 -1.8370 -3.4200 -5.9318 31 1 1.6985 -4.5311 1.0287 32 1 2.6593 -3.1644 1.8099 33 1 0.5082 -1.8796 2.2087 34 1 -0.4534 -3.2456 1.4274 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475783523.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:09 Heat of formation + Delta-G solvation = -163.587572 kcal Electronic energy + Delta-G solvation = -20837.102850 eV Core-core repulsion = 17147.313535 eV Total energy + Delta-G solvation = -3689.789314 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.084 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.09642 -47.10382 -36.79520 -36.44277 -36.02451 -35.10410 -32.06755 -31.36773 -28.21471 -25.49555 -25.20670 -22.27678 -21.24687 -19.77576 -18.76031 -17.82618 -17.47507 -17.12769 -16.46032 -16.06963 -15.67155 -15.24809 -14.77661 -14.63582 -14.30602 -13.93232 -13.79151 -13.45498 -13.15997 -12.86508 -12.41939 -11.99522 -11.94313 -11.82033 -11.48050 -11.31651 -11.20062 -11.07130 -10.93086 -10.91950 -10.62248 -10.49061 -10.15515 -9.77341 -9.33266 -8.99422 -8.58624 -8.13093 -6.16589 -4.27164 1.00148 3.24445 3.31805 3.33836 3.40650 3.73932 4.07928 4.21598 4.35717 4.36533 4.51452 4.90626 4.97231 5.06095 5.12090 5.17985 5.28247 5.46362 5.66426 5.73071 5.91644 6.01831 6.22020 6.33113 6.56934 6.69071 6.94687 7.12873 7.21901 7.36108 7.78152 8.17383 8.78325 9.44319 10.91078 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018102 B = 0.005450 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.421120 B = 5136.785140 C = 5893.185737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.083 3.917 3 Si 0.891 3.109 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.068 0.932 9 C 0.042 3.958 10 C -0.553 4.553 11 S 2.606 3.394 12 O -0.972 6.972 13 O -0.947 6.947 14 N -1.133 6.133 15 C 0.116 3.884 16 C -0.179 4.179 17 C 0.264 3.736 18 F -0.202 7.202 19 F -0.208 7.208 20 C -0.208 4.208 21 C -0.141 4.141 22 H 0.264 0.736 23 H 0.134 0.866 24 H 0.099 0.901 25 H 0.410 0.590 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.902 -8.835 -8.826 13.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.122 4.122 3 Si 0.718 3.282 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.040 3.960 10 C -0.687 4.687 11 S 2.704 3.296 12 O -0.963 6.963 13 O -0.937 6.937 14 N -0.889 5.889 15 C -0.011 4.011 16 C -0.218 4.218 17 C 0.209 3.791 18 F -0.183 7.183 19 F -0.189 7.189 20 C -0.245 4.245 21 C -0.180 4.180 22 H 0.073 0.927 23 H 0.152 0.848 24 H 0.118 0.882 25 H 0.242 0.758 26 H 0.089 0.911 27 H 0.109 0.891 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.133 0.867 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.148 -8.347 -8.757 12.789 hybrid contribution -0.392 0.484 -0.089 0.629 sum -4.540 -7.863 -8.847 12.677 Atomic orbital electron populations 1.69962 1.06049 1.27341 1.47744 1.24946 0.94812 0.99234 0.93249 0.86649 0.79934 0.82364 0.79294 1.19439 1.21110 1.19872 1.20487 0.93693 0.88583 1.52611 0.91369 1.18283 0.99054 0.94376 0.84300 1.29978 1.16472 1.08485 1.13725 1.05204 0.76474 0.73748 0.74220 1.93511 1.65390 1.59517 1.77858 1.93547 1.74829 1.50876 1.74438 1.55988 1.62075 1.22535 1.48334 1.21129 0.93932 0.96042 0.90029 1.22863 1.01479 1.00667 0.96793 1.21847 0.96659 0.77351 0.83224 1.93026 1.85392 1.49177 1.90709 1.92983 1.93267 1.74644 1.58048 1.23199 0.98694 0.96018 1.06605 1.22553 0.92554 1.01031 1.01863 0.92652 0.84832 0.88202 0.75765 0.91087 0.89094 0.88575 0.88071 0.86700 0.90671 0.89506 0.89575 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.58 12.98 55.43 0.72 -22.87 16 2 C 0.08 2.22 5.38 -17.82 -0.10 2.12 16 3 Si 0.89 21.13 29.55 -169.99 -5.02 16.11 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -13.88 8.18 -34.44 -0.28 -14.17 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 C 0.04 1.00 1.32 -155.66 -0.21 0.80 16 10 C -0.55 -11.02 5.92 37.16 0.22 -10.80 16 11 S 2.61 50.22 5.19 -107.50 -0.56 49.66 16 12 O -0.97 -20.58 18.08 -57.54 -1.04 -21.62 16 13 O -0.95 -22.01 17.18 -57.54 -0.99 -23.00 16 14 N -1.13 -15.25 5.89 -10.62 -0.06 -15.31 16 15 C 0.12 1.34 6.04 -4.05 -0.02 1.32 16 16 C -0.18 -1.55 5.58 -26.73 -0.15 -1.70 16 17 C 0.26 2.36 5.29 37.16 0.20 2.55 16 18 F -0.20 -2.42 17.02 2.25 0.04 -2.38 16 19 F -0.21 -2.13 17.34 2.25 0.04 -2.09 16 20 C -0.21 -4.46 9.96 -26.69 -0.27 -4.73 16 21 C -0.14 -3.13 9.49 -26.69 -0.25 -3.38 16 22 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 23 H 0.13 2.73 8.14 -51.92 -0.42 2.31 16 24 H 0.10 1.64 8.09 -51.92 -0.42 1.22 16 25 H 0.41 4.43 8.62 -34.47 -0.30 4.13 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.09 1.23 7.50 -51.93 -0.39 0.84 16 28 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 33 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 315.33 15.07 4.75 4.75 Total: -1.00 -32.95 315.33 -7.44 -40.39 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -4.46 Total: 4.35 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: -0.86 Total: -27.98 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.66 Total: -38.18 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: -2.03 Total: -44.63 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.08 Total: -4.48 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 50.22 SS G_CDS: -0.56 Total: 49.66 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.95 -7.44 -40.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475783523.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.193 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds