Wall clock time and date at job start Tue Mar 31 2020 06:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47138 * 2 1 4 4 H 1.08996 * 109.47105 * 305.17478 * 3 2 1 5 5 C 1.50699 * 109.46613 * 185.17696 * 3 2 1 6 6 H 1.08006 * 119.99768 * 244.94261 * 5 3 2 7 7 C 1.37873 * 120.00437 * 64.94592 * 5 3 2 8 8 N 1.31517 * 119.99924 * 7.03134 * 7 5 3 9 9 Si 1.86802 * 120.00337 * 187.02845 * 7 5 3 10 10 H 1.48496 * 109.47179 * 84.99112 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99485 * 9 7 5 12 12 H 1.48499 * 109.47109 * 324.99032 * 9 7 5 13 13 O 1.45195 * 109.47442 * 65.17890 * 3 2 1 14 14 C 1.34682 * 116.99725 * 270.00117 * 13 3 2 15 15 O 1.21427 * 120.00292 * 359.97438 * 14 13 3 16 16 C 1.48067 * 119.99808 * 179.97438 * 14 13 3 17 17 C 1.39316 * 119.71631 * 179.72451 * 16 14 13 18 18 C 1.38630 * 119.08469 * 179.73200 * 17 16 14 19 19 C 1.50695 * 120.74413 * 180.26294 * 18 17 16 20 20 C 1.38556 * 118.50675 * 0.53116 * 18 17 16 21 21 C 1.38751 * 119.34655 * 359.72806 * 20 18 17 22 22 Cl 1.73608 * 119.56193 * 179.97438 * 21 20 18 23 23 N 1.31595 * 120.87646 * 0.02562 * 21 20 18 24 24 H 1.08991 * 109.47245 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47229 * 59.99802 * 1 2 3 26 26 H 1.09007 * 109.46710 * 300.00032 * 1 2 3 27 27 H 1.09005 * 109.46901 * 119.99772 * 2 1 3 28 28 H 1.08995 * 109.46803 * 239.99620 * 2 1 3 29 29 H 0.96998 * 120.00398 * 179.97438 * 8 7 5 30 30 H 1.08000 * 120.45718 * 359.97438 * 17 16 14 31 31 H 1.08996 * 109.47052 * 270.27323 * 19 18 17 32 32 H 1.09001 * 109.47492 * 30.27735 * 19 18 17 33 33 H 1.08998 * 109.47157 * 150.27534 * 19 18 17 34 34 H 1.07998 * 120.32411 * 179.71324 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6030 1.9824 -0.8400 5 6 3.5416 1.4443 -0.1282 6 1 4.1522 1.8154 0.6817 7 6 4.1358 0.9723 -1.2793 8 7 3.3951 0.6501 -2.3172 9 14 5.9930 0.7903 -1.3647 10 1 6.3887 -0.5214 -0.7922 11 1 6.4330 0.8653 -2.7811 12 1 6.6336 1.8825 -0.5889 13 8 1.6596 2.0904 1.2424 14 6 0.4725 2.7263 1.2618 15 8 -0.2254 2.7397 0.2683 16 6 0.0185 3.4091 2.4947 17 6 -1.2078 4.0700 2.5065 18 6 -1.6226 4.7001 3.6696 19 6 -2.9449 5.4208 3.7258 20 6 -0.7916 4.6572 4.7774 21 6 0.4195 3.9853 4.6934 22 17 1.4654 3.9285 6.0779 23 7 0.7863 3.3913 3.5779 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 0.5139 0.8901 27 1 1.8934 -0.5138 0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 3.8132 0.3184 -3.1272 30 1 -1.8287 4.0877 1.6230 31 1 -2.8050 6.4602 3.4289 32 1 -3.6496 4.9407 3.0469 33 1 -3.3364 5.3829 4.7423 34 1 -1.0835 5.1421 5.6972 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001514949094.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:48 Heat of formation + Delta-G solvation = -69.132839 kcal Electronic energy + Delta-G solvation = -19722.141392 eV Core-core repulsion = 16452.800671 eV Total energy + Delta-G solvation = -3269.340721 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.71779 -39.22606 -36.78014 -35.85210 -34.38530 -33.39302 -31.58370 -31.21111 -28.21682 -27.37021 -25.05732 -23.12367 -22.85112 -20.93167 -19.61322 -17.72411 -17.18323 -16.48853 -16.13308 -15.84186 -15.56861 -15.13883 -14.60289 -14.43871 -13.46594 -13.24532 -13.11348 -12.89516 -12.84368 -12.34871 -12.06245 -11.66777 -11.51877 -11.40748 -11.29087 -11.20826 -10.95747 -10.64826 -10.29818 -10.19234 -9.85334 -9.81618 -9.59492 -9.39828 -9.18725 -8.82919 -8.44508 -6.17640 -4.21646 0.40593 0.86856 1.64275 2.73069 3.25082 3.28573 3.34010 3.41255 3.73347 4.14310 4.34300 4.57812 4.66761 4.72075 4.84641 5.15747 5.21213 5.29460 5.36663 5.52913 5.73764 5.91895 6.17610 6.18973 6.25663 6.39489 6.82845 6.90553 7.11840 7.13621 7.42961 7.59696 7.67803 7.85363 8.12681 8.56235 8.90474 9.42475 10.91292 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.019514 B = 0.004691 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.515200 B = 5966.937584 C = 6920.441661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.217 3.783 4 H 0.055 0.945 5 C -0.522 4.522 6 H 0.070 0.930 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.909 3.091 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.271 1.271 13 O -0.326 6.326 14 C 0.509 3.491 15 O -0.501 6.501 16 C 0.131 3.869 17 C -0.113 4.113 18 C -0.040 4.040 19 C -0.114 4.114 20 C -0.139 4.139 21 C 0.175 3.825 22 Cl -0.027 7.027 23 N -0.429 5.429 24 H 0.035 0.965 25 H 0.055 0.945 26 H 0.032 0.968 27 H 0.046 0.954 28 H 0.094 0.906 29 H 0.266 0.734 30 H 0.158 0.842 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.435 8.155 13.581 19.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.164 3.836 4 H 0.072 0.928 5 C -0.560 4.560 6 H 0.089 0.911 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.736 3.264 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.196 1.196 13 O -0.240 6.240 14 C 0.351 3.649 15 O -0.390 6.390 16 C -0.006 4.006 17 C -0.133 4.133 18 C -0.048 4.048 19 C -0.171 4.171 20 C -0.160 4.160 21 C 0.007 3.993 22 Cl 0.002 6.998 23 N -0.142 5.142 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.176 0.824 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.679 7.593 13.105 18.532 hybrid contribution 0.368 0.161 -0.019 0.402 sum -10.311 7.753 13.086 18.376 Atomic orbital electron populations 1.21871 0.98186 0.99251 1.00842 1.21939 0.92878 0.99292 1.02608 1.20810 0.95494 0.88706 0.78542 0.92770 1.21001 0.89434 1.43258 1.02259 0.91147 1.24879 0.99140 0.95056 0.94658 1.69968 1.35687 1.43505 1.03320 0.86332 0.84031 0.78904 0.77172 1.20224 1.21075 1.19625 1.86674 1.32366 1.61178 1.43751 1.20446 0.81738 0.77064 0.85653 1.90807 1.55631 1.58609 1.34000 1.20431 0.91488 0.97457 0.91175 1.22147 0.96003 0.95680 0.99516 1.20276 0.96819 0.95693 0.91968 1.20839 0.92117 1.00331 1.03764 1.21937 0.93224 1.00334 1.00485 1.21640 0.90707 0.97046 0.89862 1.98413 1.67147 1.97081 1.37191 1.67046 1.33330 1.15859 0.98014 0.94598 0.92570 0.94925 0.93512 0.88774 0.92406 0.82439 0.89899 0.90277 0.90527 0.83272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.57 37.16 0.32 -2.82 16 2 C -0.13 -3.21 5.53 -26.73 -0.15 -3.36 16 3 C 0.22 5.85 2.12 -27.88 -0.06 5.79 16 4 H 0.05 1.60 7.13 -51.93 -0.37 1.23 16 5 C -0.52 -14.90 8.83 -34.44 -0.30 -15.20 16 6 H 0.07 2.02 7.82 -52.48 -0.41 1.61 16 7 C 0.07 1.81 5.20 -17.82 -0.09 1.72 16 8 N -0.89 -25.33 12.01 55.43 0.67 -24.67 16 9 Si 0.91 21.40 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 O -0.33 -8.15 9.62 -40.44 -0.39 -8.54 16 14 C 0.51 11.12 6.41 34.76 0.22 11.34 16 15 O -0.50 -11.36 13.51 -19.21 -0.26 -11.62 16 16 C 0.13 2.33 6.75 -83.03 -0.56 1.77 16 17 C -0.11 -1.52 9.34 -39.04 -0.36 -1.89 16 18 C -0.04 -0.40 5.91 -104.36 -0.62 -1.02 16 19 C -0.11 -0.70 10.06 36.00 0.36 -0.34 16 20 C -0.14 -1.45 9.59 -39.27 -0.38 -1.83 16 21 C 0.17 2.44 7.27 -17.46 -0.13 2.32 16 22 Cl -0.03 -0.34 29.11 -51.86 -1.51 -1.85 16 23 N -0.43 -7.65 10.10 -6.95 -0.07 -7.72 16 24 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.26 7.80 -51.93 -0.41 0.86 16 26 H 0.03 0.69 6.05 -51.92 -0.31 0.37 16 27 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.09 2.50 6.65 -51.93 -0.35 2.15 16 29 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.16 1.93 7.64 -52.49 -0.40 1.53 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 33 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 34 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 310.87 15.07 4.68 4.68 Total: -1.00 -31.30 310.87 -7.56 -38.86 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -3.91 Total: -2.02 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -1.75 Total: -3.50 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.60 Total: -32.38 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.65 Total: -20.16 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.51 Total: -1.85 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.30 -7.56 -38.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001514949094.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.275 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds