Wall clock time and date at job start Tue Mar 31 2020 05:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00291 * 2 1 4 4 H 1.48494 * 109.47051 * 239.99903 * 3 2 1 5 5 H 1.48501 * 109.46677 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47226 * 119.99318 * 3 2 1 7 7 C 1.37878 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99714 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46807 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46916 * 179.97438 * 10 9 7 12 12 C 1.46905 * 110.99870 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.47224 * 325.00460 * 12 11 10 14 14 C 1.50702 * 109.46876 * 85.00155 * 12 11 10 15 15 O 1.20819 * 120.00031 * 359.97438 * 14 12 11 16 16 O 1.34231 * 119.99421 * 179.97438 * 14 12 11 17 17 C 1.50702 * 109.47206 * 205.00135 * 12 11 10 18 18 C 1.38262 * 119.99226 * 319.72397 * 17 12 11 19 19 C 1.38212 * 120.02507 * 179.76518 * 18 17 12 20 20 C 1.38234 * 120.01439 * 0.51288 * 19 18 17 21 21 C 1.38328 * 119.98456 * 359.73794 * 20 19 18 22 22 Cl 1.73605 * 120.01243 * 180.02562 * 21 20 19 23 23 C 1.38190 * 119.99396 * 140.00038 * 17 12 11 24 24 H 0.97007 * 120.00038 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47327 * 60.00338 * 9 7 2 26 26 H 1.08996 * 109.47062 * 299.99195 * 9 7 2 27 27 H 1.09004 * 109.46889 * 60.00274 * 10 9 7 28 28 H 1.08995 * 109.47384 * 299.99914 * 10 9 7 29 29 H 1.00901 * 111.00067 * 303.95263 * 11 10 9 30 30 H 0.96702 * 116.99602 * 179.97438 * 16 14 12 31 31 H 1.08005 * 119.98688 * 0.02562 * 18 17 12 32 32 H 1.08006 * 119.99330 * 180.25361 * 19 18 17 33 33 H 1.08007 * 120.00960 * 179.72486 * 20 19 18 34 34 H 1.08004 * 120.00681 * 359.97438 * 23 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4351 -6.0760 0.0018 13 1 3.3180 -5.8288 -0.5877 14 6 2.8473 -6.3877 1.4174 15 8 2.4157 -5.7264 2.3318 16 8 3.6940 -7.4001 1.6623 17 6 1.7505 -7.2770 -0.5981 18 6 0.4257 -7.5378 -0.3006 19 6 -0.2042 -8.6364 -0.8542 20 6 0.4931 -9.4811 -1.6975 21 6 1.8200 -9.2237 -1.9914 22 17 2.6962 -10.2837 -3.0508 23 6 2.4486 -8.1207 -1.4410 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6043 0.8906 28 1 2.8718 -3.6044 -0.8894 29 1 0.8744 -4.9841 0.7828 30 1 3.9296 -7.5616 2.5862 31 1 -0.1184 -6.8803 0.3614 32 1 -1.2403 -8.8373 -0.6247 33 1 0.0020 -10.3421 -2.1265 34 1 3.4847 -7.9192 -1.6701 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181681.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:46 Heat of formation + Delta-G solvation = -80.006193 kcal Electronic energy + Delta-G solvation = -19292.811664 eV Core-core repulsion = 16022.999439 eV Total energy + Delta-G solvation = -3269.812225 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.70177 -39.25108 -36.84435 -36.45098 -35.54494 -33.30777 -31.79351 -30.86524 -29.14751 -26.62819 -23.99355 -22.79497 -22.76271 -20.68554 -20.63113 -18.21641 -17.29952 -17.07047 -16.38122 -16.02195 -15.52384 -15.23237 -14.64684 -14.32847 -14.03298 -13.79598 -13.52425 -13.46950 -12.92889 -12.35838 -12.17085 -11.75170 -11.63171 -11.55477 -11.50984 -11.17242 -11.02368 -10.95136 -10.78033 -10.57972 -10.12859 -9.49924 -9.22223 -9.05061 -8.79853 -8.40374 -8.23681 -6.00704 -4.03522 0.99651 1.09628 1.94278 2.15385 2.96922 3.33567 3.37802 3.39979 3.51339 4.28601 4.45644 4.58205 4.68014 4.89961 5.05522 5.10310 5.22113 5.32032 5.35540 5.57036 5.67768 6.02764 6.14234 6.18967 6.27574 6.33600 6.41970 6.61989 6.86732 7.13848 7.53285 7.68851 7.82129 7.84321 8.02093 8.39356 9.02590 9.60146 11.10714 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.022567 B = 0.003512 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.446829 B = 7970.850053 C = 8312.964370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.028 3.972 10 C 0.059 3.941 11 N -0.653 5.653 12 C 0.135 3.865 13 H 0.124 0.876 14 C 0.452 3.548 15 O -0.504 6.504 16 O -0.515 6.515 17 C -0.054 4.054 18 C -0.087 4.087 19 C -0.108 4.108 20 C -0.110 4.110 21 C -0.036 4.036 22 Cl -0.075 7.075 23 C -0.090 4.090 24 H 0.261 0.739 25 H 0.027 0.973 26 H 0.017 0.983 27 H 0.026 0.974 28 H 0.064 0.936 29 H 0.351 0.649 30 H 0.404 0.596 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.709 -21.531 -1.671 21.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.068 4.068 11 N -0.285 5.285 12 C 0.022 3.978 13 H 0.142 0.858 14 C 0.291 3.709 15 O -0.391 6.391 16 O -0.326 6.326 17 C -0.055 4.055 18 C -0.105 4.105 19 C -0.126 4.126 20 C -0.128 4.128 21 C -0.063 4.063 22 Cl -0.046 7.046 23 C -0.110 4.110 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.035 0.965 27 H 0.044 0.956 28 H 0.082 0.918 29 H 0.173 0.827 30 H 0.263 0.737 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.312 -21.224 -2.594 21.637 hybrid contribution 1.021 0.835 1.471 1.975 sum 4.333 -20.389 -1.123 20.875 Atomic orbital electron populations 1.69958 1.06031 1.26766 1.50385 1.24987 0.94851 0.99214 0.95207 0.86632 0.79565 0.83050 0.78599 1.20196 1.21244 1.20282 1.21091 0.92940 0.90890 1.51264 0.92771 1.19040 0.93906 0.90087 0.97939 1.22373 0.97547 0.87703 0.99219 1.61117 1.17045 1.01066 1.49295 1.20363 0.97444 0.91613 0.88355 0.85801 1.24994 0.75239 0.76633 0.94009 1.90768 1.52980 1.48847 1.46472 1.84601 1.60831 1.50798 1.36333 1.19288 0.94317 0.94354 0.97527 1.21147 0.93977 0.96409 0.98976 1.21100 1.00171 0.94440 0.96913 1.21059 0.92471 1.00470 0.98838 1.20788 0.93294 0.94371 0.97819 1.98365 1.76327 1.65194 1.64752 1.20849 1.00429 0.93054 0.96628 0.92887 0.95472 0.96499 0.95578 0.91783 0.82750 0.73750 0.85011 0.84872 0.85053 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.72 5.23 -27.88 -0.15 0.57 16 10 C 0.06 1.22 5.32 -3.82 -0.02 1.20 16 11 N -0.65 -11.17 5.56 -109.18 -0.61 -11.78 16 12 C 0.14 1.87 2.70 -70.01 -0.19 1.68 16 13 H 0.12 1.57 7.66 -51.93 -0.40 1.18 16 14 C 0.45 6.32 7.43 36.01 0.27 6.58 16 15 O -0.50 -8.75 16.06 -18.74 -0.30 -9.05 16 16 O -0.52 -5.52 13.34 -39.26 -0.52 -6.05 16 17 C -0.05 -0.67 4.88 -104.63 -0.51 -1.18 16 18 C -0.09 -1.03 9.32 -39.58 -0.37 -1.39 16 19 C -0.11 -1.08 10.04 -39.59 -0.40 -1.47 16 20 C -0.11 -1.07 9.83 -39.55 -0.39 -1.46 16 21 C -0.04 -0.39 6.32 -39.50 -0.25 -0.64 16 22 Cl -0.08 -0.75 28.96 -51.86 -1.50 -2.25 16 23 C -0.09 -1.02 9.45 -39.55 -0.37 -1.39 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.03 0.55 7.62 -51.93 -0.40 0.16 16 28 H 0.06 1.27 8.06 -51.93 -0.42 0.85 16 29 H 0.35 6.16 7.10 -39.29 -0.28 5.88 16 30 H 0.40 2.71 9.10 45.56 0.41 3.13 16 31 H 0.13 1.56 7.26 -52.48 -0.38 1.18 16 32 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 34 H 0.14 1.34 8.04 -52.48 -0.42 0.92 16 LS Contribution 316.44 15.07 4.77 4.77 Total: -1.00 -32.35 316.44 -8.35 -40.70 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -3.11 Total: 4.14 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -2.79 Total: -11.04 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.13 Total: -37.91 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.82 Total: -15.09 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.35 -8.35 -40.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181681.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.305 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds