Wall clock time and date at job start Tue Mar 31 2020 06:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47303 * 2 1 4 4 N 1.46499 * 109.46882 * 305.00481 * 3 2 1 5 5 C 1.36935 * 119.99926 * 299.99702 * 4 3 2 6 6 H 1.08005 * 119.99877 * 359.97438 * 5 4 3 7 7 C 1.38811 * 120.00369 * 179.73019 * 5 4 3 8 8 N 1.31617 * 119.99773 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47154 * 89.99247 * 9 7 5 11 11 H 1.48496 * 109.47375 * 209.99772 * 9 7 5 12 12 H 1.48502 * 109.46736 * 329.99467 * 9 7 5 13 13 C 1.50698 * 109.47480 * 185.00293 * 3 2 1 14 14 O 1.20826 * 119.99751 * 334.99371 * 13 3 2 15 15 O 1.34225 * 119.99855 * 154.99957 * 13 3 2 16 16 C 1.50699 * 109.46920 * 64.99694 * 3 2 1 17 17 C 1.38241 * 119.98616 * 29.73217 * 16 3 2 18 18 C 1.38219 * 120.01213 * 179.72332 * 17 16 3 19 19 C 1.38352 * 119.98722 * 0.54213 * 18 17 16 20 20 Cl 1.73594 * 120.01349 * 179.70459 * 19 18 17 21 21 C 1.38349 * 119.97147 * 359.73144 * 19 18 17 22 22 C 1.38216 * 119.98826 * 359.97438 * 21 19 18 23 23 H 1.08994 * 109.47432 * 59.99776 * 1 2 3 24 24 H 1.09003 * 109.46798 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46873 * 299.99998 * 1 2 3 26 26 H 1.08997 * 109.47402 * 240.00199 * 2 1 3 27 27 H 1.09000 * 109.47236 * 119.99806 * 2 1 3 28 28 H 0.97005 * 120.00261 * 119.99827 * 4 3 2 29 29 H 0.97004 * 120.00382 * 180.02562 * 8 7 5 30 30 H 0.96704 * 116.99383 * 179.97438 * 15 13 3 31 31 H 1.07998 * 119.99251 * 359.97438 * 17 16 3 32 32 H 1.07998 * 120.00391 * 180.27839 * 18 17 16 33 33 H 1.08000 * 120.00750 * 180.02562 * 21 19 18 34 34 H 1.08004 * 119.99484 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4558 2.1670 -1.1314 5 6 1.6827 1.7359 -2.4111 6 1 2.2927 0.8620 -2.5864 7 6 1.1245 2.4190 -3.4829 8 7 0.3768 3.4808 -3.2690 9 14 1.4334 1.8305 -5.2287 10 1 0.3786 0.8605 -5.6180 11 1 1.4049 2.9911 -6.1546 12 1 2.7625 1.1721 -5.3011 13 6 3.5419 1.4444 -0.1239 14 8 4.1792 0.4843 0.2395 15 8 4.1716 2.5125 -0.6379 16 6 1.6413 2.1163 1.2877 17 6 1.5010 1.3704 2.4431 18 6 1.1409 1.9886 3.6257 19 6 0.9099 3.3525 3.6505 20 17 0.4501 4.1285 5.1337 21 6 1.0449 4.0975 2.4926 22 6 1.4110 3.4791 1.3119 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.9082 2.9521 -0.9740 29 1 -0.0136 3.9580 -4.0179 30 1 5.1358 2.4673 -0.6969 31 1 1.6768 0.3050 2.4226 32 1 1.0357 1.4065 4.5292 33 1 0.8652 5.1623 2.5114 34 1 1.5161 4.0606 0.4079 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609935546.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:53 Heat of formation + Delta-G solvation = -58.899556 kcal Electronic energy + Delta-G solvation = -20594.427035 eV Core-core repulsion = 17325.530062 eV Total energy + Delta-G solvation = -3268.896973 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.32438 -38.83406 -36.71338 -35.73291 -35.32042 -32.79835 -31.20462 -30.13395 -29.72218 -26.53065 -23.96842 -22.59975 -22.26719 -21.95847 -19.09208 -17.87822 -17.31320 -16.75630 -16.04880 -15.65182 -15.14172 -14.49721 -14.29555 -14.04572 -13.60867 -13.56122 -13.22178 -12.92518 -12.64852 -12.39071 -11.65856 -11.49680 -11.43482 -11.23534 -11.02402 -10.96434 -10.81111 -10.74433 -10.54233 -10.29481 -10.24448 -9.97953 -9.75455 -9.11805 -8.87333 -8.43933 -7.24402 -5.95940 -3.26690 1.21295 1.45218 2.17773 2.91118 3.33962 3.41427 3.42070 3.61812 3.99537 4.41534 4.88401 4.99017 5.00965 5.26381 5.39773 5.49638 5.58731 5.72605 5.81168 5.86438 5.98350 6.11390 6.26925 6.31425 6.35756 6.39828 6.50819 6.76473 6.81811 6.93772 7.08621 7.17378 7.53742 8.17871 8.63556 9.33066 9.77305 10.15474 11.25188 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.021390 B = 0.005418 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.731466 B = 5166.537390 C = 5541.341779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C 0.252 3.748 4 N -0.690 5.690 5 C -0.246 4.246 6 H 0.070 0.930 7 C 0.003 3.997 8 N -0.922 5.922 9 Si 0.908 3.092 10 H -0.287 1.287 11 H -0.290 1.290 12 H -0.281 1.281 13 C 0.477 3.523 14 O -0.545 6.545 15 O -0.491 6.491 16 C -0.069 4.069 17 C -0.094 4.094 18 C -0.117 4.117 19 C -0.036 4.036 20 Cl -0.083 7.083 21 C -0.112 4.112 22 C -0.081 4.081 23 H 0.079 0.921 24 H 0.043 0.957 25 H 0.046 0.954 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.393 0.607 29 H 0.259 0.741 30 H 0.387 0.613 31 H 0.138 0.862 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.135 -0.829 12.286 12.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C 0.156 3.844 4 N -0.333 5.333 5 C -0.376 4.376 6 H 0.088 0.912 7 C -0.195 4.195 8 N -0.568 5.568 9 Si 0.738 3.262 10 H -0.214 1.214 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.317 3.683 14 O -0.435 6.435 15 O -0.298 6.298 16 C -0.069 4.069 17 C -0.113 4.113 18 C -0.135 4.135 19 C -0.062 4.062 20 Cl -0.054 7.054 21 C -0.131 4.131 22 C -0.099 4.099 23 H 0.098 0.902 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.231 0.769 29 H 0.069 0.931 30 H 0.243 0.757 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.845 -1.023 12.333 12.404 hybrid contribution 0.669 0.002 -0.936 1.150 sum 1.514 -1.021 11.397 11.543 Atomic orbital electron populations 1.21683 0.94582 1.00479 1.03163 1.21781 0.96982 0.94313 1.01990 1.18330 0.84770 0.94012 0.87254 1.42485 1.58688 1.32132 0.99989 1.19051 1.26528 1.09589 0.82451 0.91164 1.24714 0.99427 0.97356 0.98002 1.69646 1.36488 1.19876 1.30812 0.86189 0.77942 0.77646 0.84376 1.21432 1.21564 1.20629 1.25539 0.93074 0.78851 0.70806 1.90586 1.68763 1.36085 1.48084 1.84793 1.25700 1.43523 1.75771 1.19817 0.99047 0.93907 0.94158 1.21145 0.98346 1.00619 0.91188 1.20948 1.01273 0.92520 0.98799 1.20935 1.04512 0.93332 0.87455 1.98346 1.91036 1.81385 1.34637 1.21045 1.00647 1.00338 0.91025 1.21213 0.96320 0.94341 0.98057 0.90211 0.93746 0.93529 0.91150 0.92075 0.76943 0.93106 0.75711 0.84480 0.85111 0.84909 0.83549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.45 37.16 0.35 -2.06 16 2 C -0.11 -2.01 3.74 -26.73 -0.10 -2.11 16 3 C 0.25 4.86 0.64 -134.12 -0.09 4.77 16 4 N -0.69 -15.55 3.72 -49.39 -0.18 -15.73 16 5 C -0.25 -6.23 8.54 -15.06 -0.13 -6.36 16 6 H 0.07 1.80 7.26 -52.48 -0.38 1.42 16 7 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 8 N -0.92 -25.59 13.06 55.49 0.72 -24.87 16 9 Si 0.91 21.26 29.55 -169.99 -5.02 16.24 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.48 9.58 6.56 36.00 0.24 9.82 16 14 O -0.55 -11.49 16.95 -18.75 -0.32 -11.81 16 15 O -0.49 -9.23 13.04 -39.24 -0.51 -9.74 16 16 C -0.07 -1.15 4.10 -104.62 -0.43 -1.58 16 17 C -0.09 -1.38 8.17 -39.59 -0.32 -1.70 16 18 C -0.12 -1.53 9.83 -39.55 -0.39 -1.92 16 19 C -0.04 -0.48 6.32 -39.50 -0.25 -0.73 16 20 Cl -0.08 -0.99 28.96 -51.86 -1.50 -2.49 16 21 C -0.11 -1.58 9.83 -39.55 -0.39 -1.97 16 22 C -0.08 -1.32 8.96 -39.59 -0.35 -1.67 16 23 H 0.08 1.60 7.31 -51.93 -0.38 1.22 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.74 6.63 -51.93 -0.34 0.40 16 26 H 0.07 1.39 7.45 -51.93 -0.39 1.00 16 27 H 0.06 0.99 6.10 -51.93 -0.32 0.68 16 28 H 0.39 9.30 5.86 -40.82 -0.24 9.06 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.39 5.36 9.10 45.56 0.41 5.78 16 31 H 0.14 1.84 6.04 -52.49 -0.32 1.53 16 32 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.15 2.58 6.71 -52.48 -0.35 2.23 16 LS Contribution 303.29 15.07 4.57 4.57 Total: -1.00 -28.94 303.29 -6.91 -35.85 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -2.71 Total: 13.54 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -1.96 Total: -5.55 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.54 Total: -40.60 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.83 Total: -21.55 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.94 -6.91 -35.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609935546.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.053 kcal (2) G-P(sol) polarization free energy of solvation -28.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds