Wall clock time and date at job start Tue Mar 31 2020 06:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47303 * 2 1 4 4 N 1.46499 * 109.46882 * 305.00481 * 3 2 1 5 5 C 1.36935 * 119.99926 * 299.99702 * 4 3 2 6 6 H 1.08005 * 119.99877 * 359.97438 * 5 4 3 7 7 C 1.38811 * 120.00369 * 179.73019 * 5 4 3 8 8 N 1.31617 * 119.99773 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47154 * 89.99247 * 9 7 5 11 11 H 1.48496 * 109.47375 * 209.99772 * 9 7 5 12 12 H 1.48502 * 109.46736 * 329.99467 * 9 7 5 13 13 C 1.50698 * 109.47480 * 185.00293 * 3 2 1 14 14 O 1.20826 * 119.99751 * 334.99371 * 13 3 2 15 15 O 1.34225 * 119.99855 * 154.99957 * 13 3 2 16 16 C 1.50699 * 109.46920 * 64.99694 * 3 2 1 17 17 C 1.38241 * 119.98616 * 29.73217 * 16 3 2 18 18 C 1.38219 * 120.01213 * 179.72332 * 17 16 3 19 19 C 1.38352 * 119.98722 * 0.54213 * 18 17 16 20 20 Cl 1.73594 * 120.01349 * 179.70459 * 19 18 17 21 21 C 1.38349 * 119.97147 * 359.73144 * 19 18 17 22 22 C 1.38216 * 119.98826 * 359.97438 * 21 19 18 23 23 H 1.08994 * 109.47432 * 59.99776 * 1 2 3 24 24 H 1.09003 * 109.46798 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46873 * 299.99998 * 1 2 3 26 26 H 1.08997 * 109.47402 * 240.00199 * 2 1 3 27 27 H 1.09000 * 109.47236 * 119.99806 * 2 1 3 28 28 H 0.97005 * 120.00261 * 119.99827 * 4 3 2 29 29 H 0.97004 * 120.00382 * 180.02562 * 8 7 5 30 30 H 0.96704 * 116.99383 * 179.97438 * 15 13 3 31 31 H 1.07998 * 119.99251 * 359.97438 * 17 16 3 32 32 H 1.07998 * 120.00391 * 180.27839 * 18 17 16 33 33 H 1.08000 * 120.00750 * 180.02562 * 21 19 18 34 34 H 1.08004 * 119.99484 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4558 2.1670 -1.1314 5 6 1.6827 1.7359 -2.4111 6 1 2.2927 0.8620 -2.5864 7 6 1.1245 2.4190 -3.4829 8 7 0.3768 3.4808 -3.2690 9 14 1.4334 1.8305 -5.2287 10 1 0.3786 0.8605 -5.6180 11 1 1.4049 2.9911 -6.1546 12 1 2.7625 1.1721 -5.3011 13 6 3.5419 1.4444 -0.1239 14 8 4.1792 0.4843 0.2395 15 8 4.1716 2.5125 -0.6379 16 6 1.6413 2.1163 1.2877 17 6 1.5010 1.3704 2.4431 18 6 1.1409 1.9886 3.6257 19 6 0.9099 3.3525 3.6505 20 17 0.4501 4.1285 5.1337 21 6 1.0449 4.0975 2.4926 22 6 1.4110 3.4791 1.3119 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.9082 2.9521 -0.9740 29 1 -0.0136 3.9580 -4.0179 30 1 5.1358 2.4673 -0.6969 31 1 1.6768 0.3050 2.4226 32 1 1.0357 1.4065 4.5292 33 1 0.8652 5.1623 2.5114 34 1 1.5161 4.0606 0.4079 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609935546.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:53 Heat of formation + Delta-G solvation = -75.875643 kcal Electronic energy + Delta-G solvation = -20595.163173 eV Core-core repulsion = 17325.530062 eV Total energy + Delta-G solvation = -3269.633111 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.77666 -40.16560 -37.94871 -37.06188 -36.89974 -34.56432 -32.52661 -31.38507 -31.31056 -28.07314 -25.74497 -24.00975 -23.55173 -23.27693 -20.54873 -19.52358 -18.91611 -18.18125 -17.64131 -17.02821 -16.44438 -16.16826 -15.68664 -15.55428 -15.05363 -14.96849 -14.55333 -14.31301 -14.03365 -13.82874 -13.13932 -12.89588 -12.85538 -12.72630 -12.52546 -12.41073 -12.35656 -12.22221 -11.96352 -11.90310 -11.86081 -11.50898 -11.42887 -10.97703 -9.99969 -9.62608 -9.11711 -7.96400 -5.26104 0.04281 0.32414 1.12404 1.32867 1.47811 1.49276 1.56323 2.27622 2.53300 2.72405 3.39410 3.56420 3.68559 3.89185 3.95721 4.14351 4.33411 4.40416 4.47797 4.54497 4.69606 4.80945 4.94332 4.99282 5.13698 5.17381 5.24250 5.36473 5.45662 5.56857 5.64243 5.68869 5.78351 6.21438 7.14766 7.32812 7.92851 8.23168 9.25435 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.021390 B = 0.005418 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.731466 B = 5166.537390 C = 5541.341779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.109 4.109 3 C 0.247 3.753 4 N -0.696 5.696 5 C -0.233 4.233 6 H 0.064 0.936 7 C -0.052 4.052 8 N -0.955 5.955 9 Si 0.961 3.039 10 H -0.286 1.286 11 H -0.295 1.295 12 H -0.277 1.277 13 C 0.476 3.524 14 O -0.557 6.557 15 O -0.499 6.499 16 C -0.086 4.086 17 C -0.094 4.094 18 C -0.107 4.107 19 C -0.035 4.035 20 Cl -0.064 7.064 21 C -0.111 4.111 22 C -0.094 4.094 23 H 0.043 0.957 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.084 0.916 28 H 0.386 0.614 29 H 0.253 0.747 30 H 0.408 0.592 31 H 0.151 0.849 32 H 0.161 0.839 33 H 0.148 0.852 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.263 -1.626 14.283 14.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.148 4.148 3 C 0.153 3.847 4 N -0.338 5.338 5 C -0.364 4.364 6 H 0.082 0.918 7 C -0.245 4.245 8 N -0.604 5.604 9 Si 0.790 3.210 10 H -0.214 1.214 11 H -0.221 1.221 12 H -0.202 1.202 13 C 0.318 3.682 14 O -0.448 6.448 15 O -0.309 6.309 16 C -0.087 4.087 17 C -0.112 4.112 18 C -0.125 4.125 19 C -0.062 4.062 20 Cl -0.035 7.035 21 C -0.129 4.129 22 C -0.113 4.113 23 H 0.062 0.938 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.222 0.778 29 H 0.062 0.938 30 H 0.267 0.733 31 H 0.169 0.831 32 H 0.179 0.821 33 H 0.166 0.834 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.011 -1.841 14.358 14.511 hybrid contribution 0.699 0.265 -1.385 1.574 sum 1.710 -1.576 12.972 13.179 Atomic orbital electron populations 1.21568 0.93740 1.01600 1.01934 1.21774 0.97623 0.93367 1.01997 1.18538 0.83978 0.94634 0.87528 1.42468 1.58871 1.32354 1.00117 1.19175 1.24962 1.08487 0.83793 0.91775 1.25309 1.00316 0.98018 1.00893 1.69766 1.38278 1.21269 1.31058 0.85349 0.77775 0.76870 0.80964 1.21351 1.22112 1.20217 1.25424 0.93370 0.78796 0.70631 1.90573 1.69089 1.36386 1.48759 1.84737 1.27715 1.43102 1.75381 1.19701 1.00998 0.94205 0.93785 1.21273 0.98011 1.01151 0.90780 1.21250 0.99496 0.92503 0.99241 1.21056 1.03575 0.93692 0.87871 1.98359 1.90770 1.81135 1.33265 1.21158 0.99995 1.01192 0.90570 1.21056 0.97785 0.94262 0.98192 0.93777 0.91415 0.92322 0.93321 0.89744 0.77811 0.93763 0.73259 0.83139 0.82103 0.83445 0.85778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 9.45 71.98 0.68 -3.65 16 2 C -0.11 -3.82 3.74 30.59 0.11 -3.71 16 3 C 0.25 9.47 0.64 2.11 0.00 9.47 16 4 N -0.70 -31.96 3.72 -310.17 -1.15 -33.11 16 5 C -0.23 -12.00 8.54 84.03 0.72 -11.28 16 6 H 0.06 3.33 7.26 -2.91 -0.02 3.31 16 7 C -0.05 -2.77 5.50 84.86 0.47 -2.31 16 8 N -0.95 -54.44 13.06 21.65 0.28 -54.16 16 9 Si 0.96 44.39 29.55 68.60 2.03 46.42 16 10 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 13 C 0.48 18.89 6.56 71.24 0.47 19.36 16 14 O -0.56 -22.87 16.95 21.96 0.37 -22.50 16 15 O -0.50 -18.64 13.04 -51.37 -0.67 -19.31 16 16 C -0.09 -2.82 4.10 -19.86 -0.08 -2.90 16 17 C -0.09 -2.49 8.17 22.27 0.18 -2.31 16 18 C -0.11 -2.42 9.83 22.29 0.22 -2.20 16 19 C -0.04 -0.85 6.32 22.32 0.14 -0.71 16 20 Cl -0.06 -1.34 28.96 -2.72 -0.08 -1.42 16 21 C -0.11 -2.97 9.83 22.29 0.22 -2.75 16 22 C -0.09 -3.05 8.96 22.26 0.20 -2.85 16 23 H 0.04 1.77 7.31 -2.39 -0.02 1.76 16 24 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.06 1.77 6.63 -2.38 -0.02 1.76 16 26 H 0.05 1.90 7.45 -2.39 -0.02 1.89 16 27 H 0.08 2.56 6.10 -2.39 -0.01 2.55 16 28 H 0.39 18.86 5.86 -92.70 -0.54 18.31 16 29 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 30 H 0.41 10.98 9.10 -74.05 -0.67 10.31 16 31 H 0.15 3.55 6.04 -2.91 -0.02 3.53 16 32 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 33 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 34 H 0.12 4.55 6.71 -2.91 -0.02 4.53 16 Total: -1.00 -61.86 303.29 4.05 -57.81 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: -0.06 Total: 32.13 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 3.33 Total: -5.85 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -0.87 Total: -87.27 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -0.30 Total: -41.82 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.42 kcal Total: -61.86 4.05 -57.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609935546.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.069 kcal (2) G-P(sol) polarization free energy of solvation -61.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds